Wall clock time and date at job start Mon Mar 30 2020 03:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30178 * 126.80472 * 2 1 4 4 O 1.20916 * 111.60436 * 180.24575 * 3 2 1 5 5 C 1.34047 * 111.56811 * 359.74774 * 4 3 2 6 6 C 1.35444 * 106.44525 * 359.97438 * 5 4 3 7 7 C 1.50701 * 128.00709 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.46921 * 260.02320 * 7 6 5 9 9 C 1.47439 * 110.99961 * 69.87543 * 8 7 6 10 10 C 1.54322 * 107.23490 * 123.25626 * 9 8 7 11 11 C 1.55135 * 103.02006 * 22.28319 * 10 9 8 12 12 O 1.42894 * 110.99135 * 82.44025 * 11 10 9 13 13 C 1.50696 * 110.99057 * 206.22070 * 11 10 9 14 14 H 1.08004 * 120.00360 * 118.54663 * 13 11 10 15 15 C 1.37886 * 119.99979 * 298.54456 * 13 11 10 16 16 N 1.31506 * 119.99539 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99771 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47134 * 60.00151 * 17 15 13 19 19 H 1.48502 * 109.46703 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47409 * 299.99667 * 17 15 13 21 21 C 1.47853 * 110.99956 * 190.71596 * 8 7 6 22 22 H 1.08994 * 109.47298 * 270.17071 * 1 2 3 23 23 H 1.08998 * 109.46415 * 30.17366 * 1 2 3 24 24 H 1.08995 * 109.46893 * 150.16454 * 1 2 3 25 25 H 1.08004 * 126.77477 * 179.97438 * 5 4 3 26 26 H 1.09002 * 109.47060 * 20.02501 * 7 6 5 27 27 H 1.09001 * 109.47380 * 140.02589 * 7 6 5 28 28 H 1.09003 * 109.89080 * 242.65955 * 9 8 7 29 29 H 1.08997 * 109.89286 * 3.84786 * 9 8 7 30 30 H 1.09003 * 110.70500 * 140.67082 * 10 9 8 31 31 H 1.09004 * 110.70538 * 263.72555 * 10 9 8 32 32 H 0.96695 * 114.00122 * 61.45498 * 12 11 10 33 33 H 0.97000 * 119.99610 * 180.02562 * 16 15 13 34 34 H 1.09002 * 110.36766 * 332.46788 * 21 8 7 35 35 H 1.08997 * 110.37443 * 94.80755 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0048 5 6 3.6025 -0.6069 -0.0033 6 6 2.3540 -1.1321 0.0039 7 6 1.9591 -2.5864 0.0079 8 7 1.5921 -2.9978 -1.3537 9 6 2.7771 -3.0418 -2.2299 10 6 2.8621 -4.4682 -2.8127 11 6 1.4055 -4.9861 -2.6832 12 8 0.6010 -4.5289 -3.7720 13 6 1.3737 -6.4896 -2.5863 14 1 0.9709 -6.9656 -1.7044 15 6 1.8590 -7.2577 -3.6235 16 7 2.3500 -6.6782 -4.6970 17 14 1.8189 -9.1214 -3.5036 18 1 0.4144 -9.5772 -3.3462 19 1 2.3940 -9.7093 -4.7401 20 1 2.6160 -9.5592 -2.3297 21 6 0.9588 -4.3338 -1.3510 22 1 -0.3633 0.0031 1.0276 23 1 -0.3632 0.8884 -0.5165 24 1 -0.3633 -0.8914 -0.5113 25 1 4.5340 -1.1536 -0.0070 26 1 2.7975 -3.1896 0.3562 27 1 1.1073 -2.7298 0.6727 28 1 2.6686 -2.3174 -3.0370 29 1 3.6746 -2.8237 -1.6511 30 1 3.1696 -4.4397 -3.8580 31 1 3.5461 -5.0834 -2.2279 32 1 0.9021 -4.8341 -4.6388 33 1 2.6910 -7.2185 -5.4268 34 1 1.3138 -4.9202 -0.5035 35 1 -0.1266 -4.2392 -1.3200 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592523844.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:15 Heat of formation + Delta-G solvation = -5.957644 kcal Electronic energy + Delta-G solvation = -18953.411256 eV Core-core repulsion = 15953.872420 eV Total energy + Delta-G solvation = -2999.538836 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.83964 -40.11690 -37.03945 -35.48075 -34.16140 -33.21850 -31.13536 -29.88723 -29.49601 -27.53018 -25.81870 -22.86405 -22.16821 -21.40426 -21.34310 -19.01540 -18.50733 -18.22369 -16.99181 -16.84977 -16.24802 -15.83864 -15.75970 -15.01254 -14.40171 -14.21913 -14.09686 -13.78437 -13.66728 -13.34176 -13.24572 -13.10119 -12.91366 -12.68326 -12.45088 -12.27124 -12.16456 -11.99399 -11.62663 -11.09940 -10.74709 -10.58842 -10.39490 -10.03508 -9.13852 -8.19619 -6.35497 0.60887 1.27101 1.42738 1.44692 1.51547 2.39470 2.42843 3.05091 3.19175 3.39106 3.70151 3.91699 4.00511 4.10299 4.27044 4.34413 4.45676 4.61995 4.62896 4.71566 4.74531 4.80301 4.90233 4.94121 5.04582 5.10984 5.28267 5.32946 5.50143 5.57988 5.82520 5.97607 6.23935 6.29145 6.70735 7.36289 7.37359 7.46960 8.85271 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.044802 B = 0.005106 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.820140 B = 5482.409279 C = 5613.088605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.025 3.975 3 N -0.402 5.402 4 O 0.086 5.914 5 C -0.044 4.044 6 C -0.199 4.199 7 C 0.127 3.873 8 N -0.528 5.528 9 C 0.057 3.943 10 C -0.135 4.135 11 C 0.232 3.768 12 O -0.589 6.589 13 C -0.561 4.561 14 H 0.057 0.943 15 C 0.031 3.969 16 N -0.912 5.912 17 Si 0.957 3.043 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.270 1.270 21 C 0.069 3.931 22 H 0.094 0.906 23 H 0.074 0.926 24 H 0.083 0.917 25 H 0.249 0.751 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.371 0.629 33 H 0.268 0.732 34 H 0.058 0.942 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.438 7.794 9.367 12.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.134 4.134 3 N -0.111 5.111 4 O 0.025 5.975 5 C -0.126 4.126 6 C -0.204 4.204 7 C -0.001 4.001 8 N -0.253 5.253 9 C -0.070 4.070 10 C -0.175 4.175 11 C 0.192 3.808 12 O -0.397 6.397 13 C -0.599 4.599 14 H 0.075 0.925 15 C -0.169 4.169 16 N -0.551 5.551 17 Si 0.783 3.217 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.195 1.195 21 C -0.058 4.058 22 H 0.112 0.888 23 H 0.093 0.907 24 H 0.102 0.898 25 H 0.265 0.735 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.219 0.781 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.633 9.753 9.516 13.723 hybrid contribution 0.893 -2.756 -0.565 2.952 sum 2.526 6.997 8.951 11.638 Atomic orbital electron populations 1.20215 0.84979 1.04011 1.03960 1.23881 1.00041 0.88353 1.01085 1.73797 0.90070 1.25100 1.22095 1.84749 1.21163 1.23856 1.67767 1.26429 1.01624 0.82954 1.01569 1.21267 0.92682 0.97238 1.09196 1.20469 1.00921 0.88205 0.90532 1.63512 1.25750 1.27053 1.08952 1.22676 0.91648 0.96624 0.96094 1.23059 0.99686 0.94519 1.00188 1.19818 0.86382 0.90641 0.83953 1.86137 1.57857 1.77117 1.18557 1.21810 1.41776 0.92572 1.03752 0.92508 1.25674 0.93480 1.02988 0.94802 1.69825 1.41057 1.37168 1.07051 0.85626 0.78364 0.80156 0.77542 1.20080 1.20878 1.19513 1.22830 0.98879 0.87470 0.96637 0.88753 0.90720 0.89783 0.73516 0.92192 0.88829 0.93051 0.91683 0.92852 0.93289 0.78142 0.92309 0.92376 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.74 10.39 71.24 0.74 -1.00 16 2 C 0.03 0.70 7.33 43.58 0.32 1.02 16 3 N -0.40 -11.89 12.07 -49.55 -0.60 -12.49 16 4 O 0.09 2.25 11.20 71.58 0.80 3.05 16 5 C -0.04 -0.95 11.79 67.17 0.79 -0.16 16 6 C -0.20 -5.17 5.26 -19.74 -0.10 -5.28 16 7 C 0.13 3.42 5.04 85.56 0.43 3.85 16 8 N -0.53 -18.56 5.15 -890.07 -4.58 -23.15 16 9 C 0.06 2.09 6.41 86.65 0.56 2.64 16 10 C -0.14 -6.00 5.37 31.77 0.17 -5.83 16 11 C 0.23 11.19 0.87 -10.16 -0.01 11.18 16 12 O -0.59 -30.85 13.16 -148.98 -1.96 -32.81 16 13 C -0.56 -29.25 8.27 25.60 0.21 -29.04 16 14 H 0.06 2.92 7.79 -2.91 -0.02 2.89 16 15 C 0.03 1.62 5.29 84.66 0.45 2.07 16 16 N -0.91 -48.17 10.74 21.45 0.23 -47.94 16 17 Si 0.96 41.16 29.54 68.60 2.03 43.19 16 18 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 C 0.07 2.79 5.86 86.77 0.51 3.29 16 22 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.25 3.21 8.06 -2.91 -0.02 3.19 16 26 H 0.06 1.47 7.96 -2.39 -0.02 1.45 16 27 H 0.09 2.32 8.07 -2.39 -0.02 2.30 16 28 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.06 1.95 6.89 -2.39 -0.02 1.94 16 30 H 0.05 2.59 7.53 -2.39 -0.02 2.57 16 31 H 0.05 2.19 8.04 -2.38 -0.02 2.17 16 32 H 0.37 19.82 7.56 -74.06 -0.56 19.26 16 33 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 34 H 0.06 2.20 7.70 -2.39 -0.02 2.18 16 35 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -59.91 293.68 0.52 -59.39 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.54 Total: 28.01 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 4.06 Total: -17.25 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -4.95 Total: -83.58 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -1.16 Total: -29.76 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -59.91 0.52 -59.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592523844.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.436 kcal (2) G-P(sol) polarization free energy of solvation -59.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds