Wall clock time and date at job start Mon Mar 30 2020 04:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47116 * 2 1 4 4 C 1.35732 * 126.27349 * 89.99809 * 3 2 1 5 5 C 1.41332 * 104.20709 * 179.97438 * 4 3 2 6 6 N 1.34122 * 127.15851 * 179.97438 * 5 4 3 7 7 C 1.32485 * 120.00410 * 180.02562 * 6 5 4 8 8 O 1.21675 * 119.99829 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.00186 * 179.97438 * 7 6 5 10 10 C 1.52996 * 109.47189 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47336 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47155 * 180.02562 * 11 10 9 13 13 H 1.07993 * 120.00233 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99689 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99465 * 180.02562 * 14 12 11 16 16 Si 1.86792 * 119.99963 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47406 * 90.00077 * 16 14 12 18 18 H 1.48500 * 109.47128 * 209.99778 * 16 14 12 19 19 H 1.48500 * 109.47671 * 329.99440 * 16 14 12 20 20 N 1.35109 * 105.68869 * 0.02562 * 5 4 3 21 21 H 0.97002 * 124.71242 * 179.97438 * 20 5 4 22 22 O 1.20978 * 110.57621 * 359.70193 * 20 5 4 23 23 H 1.09008 * 109.47142 * 59.99333 * 1 2 3 24 24 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47214 * 300.00167 * 1 2 3 26 26 H 1.09000 * 109.46884 * 240.00733 * 2 1 3 27 27 H 1.09000 * 109.46955 * 120.00048 * 2 1 3 28 28 H 1.07997 * 127.90096 * 359.97438 * 4 3 2 29 29 H 1.09002 * 109.47442 * 300.00456 * 9 7 6 30 30 H 1.09009 * 109.47054 * 60.00006 * 9 7 6 31 31 H 1.08996 * 109.47245 * 300.00300 * 10 9 7 32 32 H 1.09003 * 109.46663 * 60.00536 * 10 9 7 33 33 H 1.09002 * 109.47338 * 300.00725 * 11 10 9 34 34 H 1.09001 * 109.47164 * 59.99911 * 11 10 9 35 35 H 0.96997 * 119.99522 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3000 2.1780 1.0943 5 6 2.7372 3.4127 0.5633 6 7 3.1211 4.4992 1.2496 7 6 3.5066 5.5893 0.6028 8 8 3.5130 5.6046 -0.6138 9 6 3.9374 6.8103 1.3739 10 6 4.3304 7.9189 0.3956 11 6 4.7684 9.1584 1.1785 12 6 5.1550 10.2506 0.2148 13 1 5.0940 10.0781 -0.8495 14 6 5.5855 11.4704 0.6921 15 7 5.9224 12.4237 -0.1490 16 14 5.6903 11.7689 2.5330 17 1 7.0382 11.3819 3.0213 18 1 5.4560 13.2078 2.8153 19 1 4.6600 10.9544 3.2261 20 7 2.6869 3.2713 -0.7794 21 1 2.9306 3.9605 -1.4170 22 8 2.3009 2.1638 -1.0761 23 1 -0.3634 0.5140 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 2.2014 1.9005 2.1333 29 1 3.1142 7.1533 2.0008 30 1 4.7926 6.5603 2.0020 31 1 5.1537 7.5756 -0.2308 32 1 3.4755 8.1689 -0.2327 33 1 3.9454 9.5018 1.8053 34 1 5.6234 8.9081 1.8066 35 1 6.2257 13.2818 0.1867 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594300018.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:32 Heat of formation + Delta-G solvation = 40.504190 kcal Electronic energy + Delta-G solvation = -17594.401710 eV Core-core repulsion = 14596.877610 eV Total energy + Delta-G solvation = -2997.524100 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.69696 -39.41644 -35.83277 -35.33809 -34.06439 -32.03485 -31.55359 -31.33733 -28.26794 -25.26480 -24.27127 -23.37335 -21.78096 -20.45996 -19.77161 -18.43018 -18.32202 -16.60583 -16.52028 -15.64944 -15.19380 -15.12240 -14.78820 -14.21077 -13.97007 -13.77154 -13.46274 -13.27986 -12.54877 -12.35164 -11.89067 -11.80656 -11.77233 -11.32518 -10.92043 -10.65369 -10.43503 -10.33692 -9.78376 -9.57103 -9.54394 -9.14379 -8.97036 -8.42534 -8.24358 -5.93065 -3.89920 0.46487 1.68385 1.69368 3.01748 3.39597 3.45954 3.51546 3.68386 3.69244 4.26409 4.33129 4.44992 4.55768 4.57336 4.83461 5.06329 5.15161 5.28776 5.40909 5.45567 5.54018 5.74625 5.92481 6.00480 6.26205 6.60817 6.74661 6.88908 7.07195 7.43501 7.52869 7.58113 7.60165 7.92234 8.67707 8.69948 9.13637 9.69789 11.20749 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.068843 B = 0.003247 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.622888 B = 8621.139005 C = 8906.701292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.047 4.047 3 C 0.073 3.927 4 C -0.237 4.237 5 C 0.418 3.582 6 N -0.634 5.634 7 C 0.488 3.512 8 O -0.591 6.591 9 C -0.118 4.118 10 C -0.089 4.089 11 C -0.015 4.015 12 C -0.516 4.516 13 H 0.071 0.929 14 C 0.063 3.937 15 N -0.907 5.907 16 Si 0.881 3.119 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.264 1.264 20 N -0.508 5.508 21 H 0.476 0.524 22 O 0.000 6.000 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.095 0.905 27 H 0.111 0.889 28 H 0.191 0.809 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.016 0.984 34 H 0.011 0.989 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.276 -30.122 2.311 32.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.085 4.085 3 C 0.014 3.986 4 C -0.260 4.260 5 C 0.168 3.832 6 N -0.399 5.399 7 C 0.278 3.722 8 O -0.474 6.474 9 C -0.157 4.157 10 C -0.127 4.127 11 C -0.053 4.053 12 C -0.554 4.554 13 H 0.089 0.911 14 C -0.138 4.138 15 N -0.547 5.547 16 Si 0.709 3.291 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.189 1.189 20 N -0.186 5.186 21 H 0.342 0.658 22 O -0.011 6.011 23 H 0.081 0.919 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.113 0.887 27 H 0.130 0.870 28 H 0.208 0.792 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.034 0.966 34 H 0.030 0.970 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.113 -29.644 1.932 31.717 hybrid contribution 0.329 0.790 0.111 0.863 sum -10.784 -28.853 2.043 30.870 Atomic orbital electron populations 1.21836 0.92571 1.03384 1.03404 1.20396 0.97255 0.85040 1.05817 1.24045 0.95456 0.95348 0.83754 1.21718 1.11641 0.91480 1.01193 1.21868 0.86847 0.95355 0.79138 1.70186 1.35713 1.00395 1.33558 1.21826 0.74951 0.88652 0.86741 1.90342 1.54032 1.85313 1.17734 1.21458 1.02382 0.92367 0.99491 1.21280 1.00904 0.93623 0.96914 1.19610 0.95848 0.93544 0.96250 1.21193 1.43367 0.96183 0.94665 0.91074 1.25059 0.94905 0.96022 0.97774 1.69932 1.45806 1.04610 1.34326 0.86745 0.78929 0.77115 0.86325 1.20345 1.21511 1.18890 1.44664 1.58759 1.04221 1.10936 0.65795 1.83939 1.70734 1.14304 1.32117 0.91866 0.90629 0.91426 0.88672 0.87046 0.79181 0.89334 0.89342 0.92545 0.92519 0.96609 0.97041 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.33 9.89 37.16 0.37 0.04 16 2 C -0.05 -0.10 6.49 -27.88 -0.18 -0.28 16 3 C 0.07 0.47 6.69 -35.20 -0.24 0.24 16 4 C -0.24 -2.03 11.07 -39.30 -0.44 -2.46 16 5 C 0.42 5.59 7.77 -156.34 -1.22 4.37 16 6 N -0.63 -10.68 10.52 -11.92 -0.13 -10.81 16 7 C 0.49 9.41 7.70 -12.00 -0.09 9.32 16 8 O -0.59 -12.13 13.39 5.21 0.07 -12.06 16 9 C -0.12 -2.29 5.77 -27.89 -0.16 -2.45 16 10 C -0.09 -2.07 4.44 -26.73 -0.12 -2.18 16 11 C -0.02 -0.39 4.04 -27.88 -0.11 -0.51 16 12 C -0.52 -15.85 9.66 -34.44 -0.33 -16.19 16 13 H 0.07 2.36 7.99 -52.49 -0.42 1.94 16 14 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 15 N -0.91 -29.39 13.96 55.43 0.77 -28.61 16 16 Si 0.88 22.83 27.47 -169.99 -4.67 18.16 16 17 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 18 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 19 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 20 N -0.51 -6.13 6.47 31.13 0.20 -5.93 16 21 H 0.48 6.38 6.28 -40.82 -0.26 6.12 16 22 O 0.00 0.00 11.14 18.56 0.21 0.21 16 23 H 0.06 0.19 8.14 -51.92 -0.42 -0.23 16 24 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 25 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 27 H 0.11 0.04 8.14 -51.93 -0.42 -0.39 16 28 H 0.19 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 30 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 31 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 32 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 33 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 34 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 35 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 LS Contribution 301.30 15.07 4.54 4.54 Total: -1.00 -37.16 301.30 -6.45 -43.61 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -4.83 Total: -0.82 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -2.61 Total: -8.28 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.85 Total: -45.35 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.28 Total: -11.86 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.67 Total: 18.16 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -37.16 -6.45 -43.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594300018.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.109 kcal (2) G-P(sol) polarization free energy of solvation -37.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds