Wall clock time and date at job start Mon Mar 30 2020 03:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35448 * 126.77456 * 2 1 4 4 C 1.41385 * 103.98165 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.79951 * 179.97438 * 4 3 2 6 6 N 1.46507 * 109.46681 * 95.00369 * 5 4 3 7 7 C 1.46498 * 119.99883 * 269.99527 * 6 5 4 8 8 C 1.34776 * 120.00104 * 90.00178 * 6 5 4 9 9 O 1.21281 * 119.99776 * 3.63310 * 8 6 5 10 10 C 1.50702 * 120.00191 * 183.63510 * 8 6 5 11 11 H 1.08997 * 109.46691 * 314.08681 * 10 8 6 12 12 C 1.52997 * 109.47159 * 74.08351 * 10 8 6 13 13 C 1.50698 * 109.46998 * 194.08437 * 10 8 6 14 14 H 1.07995 * 120.00400 * 0.02562 * 13 10 8 15 15 C 1.37884 * 119.99679 * 179.97438 * 13 10 8 16 16 N 1.31511 * 119.99854 * 179.97438 * 15 13 10 17 17 Si 1.86794 * 119.99899 * 0.02562 * 15 13 10 18 18 H 1.48500 * 109.47305 * 90.00282 * 17 15 13 19 19 H 1.48503 * 109.47284 * 209.99964 * 17 15 13 20 20 H 1.48506 * 109.47324 * 329.99994 * 17 15 13 21 21 N 1.30177 * 106.39763 * 0.26565 * 4 3 2 22 22 O 1.20919 * 111.59895 * 359.53065 * 21 4 3 23 23 H 1.09000 * 109.47465 * 89.99530 * 1 2 3 24 24 H 1.09000 * 109.47300 * 210.00141 * 1 2 3 25 25 H 1.09004 * 109.46746 * 329.99269 * 1 2 3 26 26 H 1.07997 * 128.01302 * 359.97438 * 3 2 1 27 27 H 1.08998 * 109.47406 * 335.00915 * 5 4 3 28 28 H 1.09004 * 109.47379 * 214.99950 * 5 4 3 29 29 H 1.09000 * 109.47414 * 264.60640 * 7 6 5 30 30 H 1.08997 * 109.47149 * 24.61350 * 7 6 5 31 31 H 1.09002 * 109.46966 * 144.60417 * 7 6 5 32 32 H 1.09009 * 109.47305 * 296.54066 * 12 10 8 33 33 H 1.08993 * 109.47550 * 176.53639 * 12 10 8 34 34 H 1.09004 * 109.47183 * 56.53152 * 12 10 8 35 35 H 0.97001 * 120.00017 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0849 0.0000 4 6 3.6213 0.5372 -0.0006 5 6 4.9210 1.3000 -0.0014 6 7 5.4038 1.4434 1.3744 7 6 5.0056 2.6052 2.1730 8 6 6.2144 0.5066 1.9052 9 8 6.5973 -0.4207 1.2237 10 6 6.6449 0.6112 3.3456 11 1 6.9596 1.6330 3.5574 12 6 5.4731 0.2394 4.2564 13 6 7.7943 -0.3307 3.5960 14 1 8.1753 -0.9435 2.7925 15 6 8.3602 -0.4094 4.8509 16 7 9.3630 -1.2318 5.0696 17 14 7.7017 0.6509 6.2406 18 1 6.6234 -0.0804 6.9531 19 1 8.8006 0.9608 7.1902 20 1 7.1577 1.9154 5.6834 21 7 3.4763 -0.7564 -0.0067 22 8 2.3095 -1.0736 -0.0006 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5140 26 1 2.0345 2.1271 -0.0004 27 1 4.7627 2.2871 -0.4356 28 1 5.6602 0.7578 -0.5912 29 1 5.7755 3.3738 2.1053 30 1 4.0631 3.0006 1.7944 31 1 4.8819 2.3055 3.2137 32 1 4.6645 0.9575 4.1197 33 1 5.8013 0.2553 5.2956 34 1 5.1184 -0.7596 4.0026 35 1 9.7614 -1.2869 5.9523 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596780964.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:09 Heat of formation + Delta-G solvation = 36.235666 kcal Electronic energy + Delta-G solvation = -18870.892736 eV Core-core repulsion = 15873.183539 eV Total energy + Delta-G solvation = -2997.709197 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.84270 -39.25090 -35.53933 -34.11030 -33.73099 -33.06372 -31.19404 -28.02295 -27.83992 -25.97893 -25.11240 -23.17058 -22.35488 -20.11147 -18.48976 -17.55728 -17.10743 -16.82076 -15.81029 -15.60962 -15.21417 -14.65493 -14.05393 -13.88965 -13.47251 -13.42834 -13.05076 -12.88462 -12.56913 -12.45712 -12.34969 -12.05507 -11.67096 -11.42466 -10.94210 -10.89756 -10.56187 -10.32871 -10.16046 -9.61035 -9.31452 -9.08853 -8.65668 -8.54524 -8.30602 -6.03003 -4.02822 1.52624 2.22018 3.14671 3.24116 3.30381 3.36694 3.54871 3.65423 4.30458 4.39122 4.43978 4.96240 5.02884 5.14646 5.20851 5.26277 5.30696 5.37871 5.50893 5.59301 5.74662 5.78556 5.82840 5.93286 6.07802 6.18939 6.34945 6.48770 6.65840 6.94140 7.17399 7.54998 7.96448 8.43171 8.56123 9.07484 9.16103 9.55670 11.10125 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.032300 B = 0.005725 C = 0.005649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.657323 B = 4889.609100 C = 4955.096538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.046 4.046 3 C -0.228 4.228 4 C 0.001 3.999 5 C 0.192 3.808 6 N -0.629 5.629 7 C 0.078 3.922 8 C 0.529 3.471 9 O -0.517 6.517 10 C 0.000 4.000 11 H 0.048 0.952 12 C -0.145 4.145 13 C -0.504 4.504 14 H 0.091 0.909 15 C 0.070 3.930 16 N -0.896 5.896 17 Si 0.884 3.116 18 H -0.278 1.278 19 H -0.295 1.295 20 H -0.267 1.267 21 N -0.335 5.335 22 O 0.102 5.898 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.168 0.832 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.035 0.965 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.770 10.086 -8.143 22.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.110 4.110 3 C -0.250 4.250 4 C -0.160 4.160 5 C 0.068 3.932 6 N -0.367 5.367 7 C -0.066 4.066 8 C 0.319 3.681 9 O -0.389 6.389 10 C -0.022 4.022 11 H 0.066 0.934 12 C -0.202 4.202 13 C -0.542 4.542 14 H 0.109 0.891 15 C -0.131 4.131 16 N -0.534 5.534 17 Si 0.714 3.286 18 H -0.205 1.205 19 H -0.222 1.222 20 H -0.192 1.192 21 N -0.037 5.037 22 O 0.033 5.967 23 H 0.103 0.897 24 H 0.100 0.900 25 H 0.107 0.893 26 H 0.185 0.815 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.511 8.457 -8.383 21.176 hybrid contribution -0.759 1.401 0.961 1.860 sum -18.269 9.858 -7.422 22.046 Atomic orbital electron populations 1.20281 0.84334 1.04462 1.03778 1.24498 0.96347 0.86604 1.03524 1.22364 0.91421 1.00677 1.10510 1.24146 0.97868 0.90315 1.03642 1.19520 0.89508 0.98487 0.85719 1.48114 1.50695 1.24830 1.13030 1.21881 0.99507 0.88067 0.97102 1.21403 0.75806 0.80189 0.90708 1.90603 1.53725 1.32306 1.62263 1.19290 0.95843 0.99739 0.87346 0.93386 1.22167 0.97314 1.00894 0.99813 1.20929 1.12942 1.22397 0.97948 0.89062 1.24978 0.94824 0.95137 0.98199 1.69883 1.24012 1.36899 1.22572 0.86916 0.77724 0.81428 0.82522 1.20539 1.22237 1.19201 1.74033 0.95925 1.16598 1.17095 1.84891 1.11551 1.33263 1.67022 0.89665 0.89955 0.89320 0.81466 0.88847 0.88326 0.92720 0.91877 0.90326 0.94575 0.93066 0.92535 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.45 36.00 0.38 -0.07 16 2 C -0.05 -0.52 7.49 -35.30 -0.26 -0.79 16 3 C -0.23 -2.63 11.06 -39.38 -0.44 -3.07 16 4 C 0.00 0.01 6.91 -82.10 -0.57 -0.55 16 5 C 0.19 2.94 6.00 -5.19 -0.03 2.91 16 6 N -0.63 -11.13 2.86 -182.95 -0.52 -11.65 16 7 C 0.08 1.04 9.85 59.85 0.59 1.63 16 8 C 0.53 12.34 6.89 -10.98 -0.08 12.27 16 9 O -0.52 -14.15 15.13 5.56 0.08 -14.07 16 10 C 0.00 -0.01 1.40 -92.93 -0.13 -0.14 16 11 H 0.05 1.11 6.53 -51.93 -0.34 0.77 16 12 C -0.14 -3.19 8.42 37.16 0.31 -2.88 16 13 C -0.50 -15.06 8.94 -34.44 -0.31 -15.36 16 14 H 0.09 3.11 7.09 -52.49 -0.37 2.74 16 15 C 0.07 2.07 5.45 -17.82 -0.10 1.98 16 16 N -0.90 -28.24 13.96 55.43 0.77 -27.46 16 17 Si 0.88 21.68 24.40 -169.99 -4.15 17.53 16 18 H -0.28 -6.65 6.84 56.52 0.39 -6.26 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.27 -6.01 6.53 56.52 0.37 -5.64 16 21 N -0.34 -6.15 12.07 33.42 0.40 -5.75 16 22 O 0.10 1.57 11.20 17.19 0.19 1.77 16 23 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 27 H 0.09 1.02 8.07 -51.93 -0.42 0.60 16 28 H 0.10 1.72 7.37 -51.93 -0.38 1.34 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.63 8.03 -51.93 -0.42 0.21 16 31 H 0.08 1.13 4.58 -51.93 -0.24 0.89 16 32 H 0.04 0.65 5.82 -51.92 -0.30 0.35 16 33 H 0.05 1.16 3.22 -51.93 -0.17 0.99 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 290.73 15.07 4.38 4.38 Total: -1.00 -36.92 290.73 -3.82 -40.74 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -4.36 Total: -1.41 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -0.63 Total: -4.07 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.65 Total: -44.86 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.28 Total: -12.30 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.15 Total: 17.53 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -36.92 -3.82 -40.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596780964.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.974 kcal (2) G-P(sol) polarization free energy of solvation -36.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds