Wall clock time and date at job start Mon Mar 30 2020 03:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30174 * 126.80701 * 2 1 4 4 O 1.20927 * 111.60729 * 180.25597 * 3 2 1 5 5 C 1.34041 * 111.56256 * 359.74749 * 4 3 2 6 6 C 1.50699 * 126.77510 * 180.02562 * 5 4 3 7 7 C 1.35446 * 106.45240 * 359.97438 * 5 4 3 8 8 C 1.50696 * 128.01088 * 179.97438 * 7 5 4 9 9 N 1.46498 * 109.47362 * 90.00128 * 8 7 5 10 10 C 1.34780 * 120.00328 * 180.02562 * 9 8 7 11 11 O 1.21279 * 119.99828 * 0.02562 * 10 9 8 12 12 C 1.50693 * 119.99868 * 180.02562 * 10 9 8 13 13 H 1.08995 * 109.47566 * 60.00144 * 12 10 9 14 14 C 1.53009 * 109.47367 * 299.99746 * 12 10 9 15 15 C 1.50706 * 109.46836 * 180.02562 * 12 10 9 16 16 H 1.08003 * 120.00044 * 5.64770 * 15 12 10 17 17 C 1.37880 * 119.99750 * 185.64299 * 15 12 10 18 18 N 1.31520 * 119.99383 * 197.12748 * 17 15 12 19 19 Si 1.86797 * 120.00370 * 17.40180 * 17 15 12 20 20 H 1.48499 * 109.47424 * 179.72236 * 19 17 15 21 21 H 1.48505 * 109.46743 * 299.72453 * 19 17 15 22 22 H 1.48505 * 109.46879 * 59.72147 * 19 17 15 23 23 H 1.09003 * 109.47341 * 270.16644 * 1 2 3 24 24 H 1.09005 * 109.47029 * 30.16130 * 1 2 3 25 25 H 1.08997 * 109.48029 * 150.16303 * 1 2 3 26 26 H 1.09005 * 109.47021 * 269.99617 * 6 5 4 27 27 H 1.09005 * 109.47329 * 29.99240 * 6 5 4 28 28 H 1.08997 * 109.47769 * 149.99405 * 6 5 4 29 29 H 1.09000 * 109.47289 * 329.99976 * 8 7 5 30 30 H 1.09003 * 109.47089 * 210.00126 * 8 7 5 31 31 H 0.97008 * 119.99932 * 0.02562 * 9 8 7 32 32 H 1.08995 * 109.46393 * 66.34678 * 14 12 10 33 33 H 1.09001 * 109.47252 * 186.35195 * 14 12 10 34 34 H 1.08995 * 109.46740 * 306.35071 * 14 12 10 35 35 H 0.96993 * 120.00300 * 355.24114 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0422 0.0000 4 8 3.4538 0.7252 -0.0050 5 6 3.6023 -0.6069 -0.0036 6 6 4.9020 -1.3698 -0.0080 7 6 2.3539 -1.1322 0.0037 8 6 1.9589 -2.5864 0.0076 9 7 1.8383 -3.0560 1.3900 10 6 1.4928 -4.3347 1.6397 11 8 1.2822 -5.0966 0.7199 12 6 1.3681 -4.8175 3.0617 13 1 0.6067 -4.2333 3.5784 14 6 2.7108 -4.6511 3.7764 15 6 0.9745 -6.2722 3.0656 16 1 0.9180 -6.8188 2.1358 17 6 0.6866 -6.9053 4.2561 18 7 0.6746 -8.2191 4.3161 19 14 0.3060 -5.8971 5.7820 20 1 0.0257 -6.8086 6.9203 21 1 1.4719 -5.0381 6.1110 22 1 -0.8819 -5.0432 5.5274 23 1 -0.3634 0.0030 1.0277 24 1 -0.3633 0.8886 -0.5164 25 1 -0.3635 -0.8914 -0.5113 26 1 5.2109 -1.5554 -1.0368 27 1 5.6681 -0.7854 0.5015 28 1 4.7672 -2.3204 0.5079 29 1 2.7198 -3.1710 -0.5096 30 1 1.0021 -2.7044 -0.5010 31 1 2.0070 -2.4467 2.1257 32 1 2.9417 -3.5903 3.8732 33 1 2.6535 -5.1025 4.7669 34 1 3.4934 -5.1421 3.1981 35 1 0.7998 -8.7425 3.5092 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596928497.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:02 Heat of formation + Delta-G solvation = 7.672864 kcal Electronic energy + Delta-G solvation = -18504.348995 eV Core-core repulsion = 15505.401222 eV Total energy + Delta-G solvation = -2998.947773 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.08679 -39.01029 -35.95425 -34.06365 -33.79550 -33.02052 -31.10775 -28.87205 -28.41382 -26.43446 -24.83890 -22.58238 -21.49027 -20.30838 -19.42441 -17.81447 -17.43908 -17.13111 -16.03048 -15.43446 -14.99449 -14.42096 -13.83893 -13.72323 -13.62931 -13.35706 -13.28936 -12.98538 -12.78268 -12.61795 -12.44914 -12.16596 -11.83823 -11.52876 -11.18200 -10.99360 -10.53570 -10.21634 -10.07581 -9.81717 -9.48285 -8.88142 -8.73499 -8.64549 -8.18191 -6.45826 -4.03768 1.24623 1.96676 2.91210 3.32712 3.39472 3.52236 3.58559 3.89082 4.03740 4.28168 4.47343 4.65157 4.77640 5.08964 5.18009 5.26450 5.27983 5.34287 5.46994 5.57073 5.59675 5.77518 5.80634 5.94756 6.04694 6.17073 6.39516 6.49894 6.84253 6.89652 7.21238 7.77874 8.11155 8.22385 8.47333 9.03420 9.06534 9.65304 10.96261 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.031010 B = 0.005137 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.706043 B = 5448.938300 C = 5558.805119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.035 3.965 3 N -0.370 5.370 4 O 0.094 5.906 5 C -0.011 4.011 6 C -0.078 4.078 7 C -0.218 4.218 8 C 0.200 3.800 9 N -0.744 5.744 10 C 0.528 3.472 11 O -0.535 6.535 12 C 0.003 3.997 13 H 0.044 0.956 14 C -0.144 4.144 15 C -0.589 4.589 16 H 0.075 0.925 17 C 0.029 3.971 18 N -0.905 5.905 19 Si 1.043 2.957 20 H -0.284 1.284 21 H -0.274 1.274 22 H -0.284 1.284 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.396 0.604 32 H 0.025 0.975 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.755 17.102 -6.497 19.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.124 4.124 3 N -0.077 5.077 4 O 0.031 5.969 5 C -0.075 4.075 6 C -0.136 4.136 7 C -0.222 4.222 8 C 0.076 3.924 9 N -0.400 5.400 10 C 0.317 3.683 11 O -0.410 6.410 12 C -0.019 4.019 13 H 0.061 0.939 14 C -0.202 4.202 15 C -0.627 4.627 16 H 0.093 0.907 17 C -0.176 4.176 18 N -0.539 5.539 19 Si 0.872 3.128 20 H -0.210 1.210 21 H -0.201 1.201 22 H -0.210 1.210 23 H 0.102 0.898 24 H 0.094 0.906 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.104 0.896 28 H 0.115 0.885 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.229 0.771 32 H 0.044 0.956 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.049 17.691 -5.563 19.220 hybrid contribution 0.303 -0.252 -1.372 1.427 sum 5.352 17.438 -6.935 19.515 Atomic orbital electron populations 1.20208 0.85789 1.03796 1.03769 1.23491 0.99031 0.88294 1.01621 1.73850 0.89227 1.23841 1.20791 1.84809 1.21727 1.22460 1.67873 1.24384 0.98327 0.83749 1.01061 1.20428 0.89818 0.98990 1.04326 1.21070 0.91833 0.97509 1.11812 1.19257 1.01733 0.85737 0.85674 1.46386 1.73892 1.12910 1.06776 1.21490 0.73809 0.79585 0.93430 1.90567 1.48595 1.54669 1.47129 1.19198 0.95152 0.99633 0.87944 0.93854 1.22181 0.98399 0.97882 1.01721 1.21946 1.51038 0.93044 0.96668 0.90736 1.25751 0.93649 0.96910 1.01270 1.70830 1.46524 1.05297 1.31272 0.84073 0.77067 0.75504 0.76167 1.20995 1.20076 1.21010 0.89843 0.90568 0.89761 0.89177 0.89628 0.88513 0.90739 0.90710 0.77077 0.95569 0.91703 0.93343 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.39 36.00 0.37 -0.41 16 2 C 0.04 0.44 7.33 -82.10 -0.60 -0.17 16 3 N -0.37 -4.97 12.07 33.42 0.40 -4.56 16 4 O 0.09 1.16 11.20 17.17 0.19 1.35 16 5 C -0.01 -0.12 7.49 -35.31 -0.26 -0.38 16 6 C -0.08 -0.59 10.25 36.01 0.37 -0.23 16 7 C -0.22 -2.65 5.69 -104.42 -0.59 -3.24 16 8 C 0.20 2.76 5.92 -5.20 -0.03 2.73 16 9 N -0.74 -11.87 5.45 -61.48 -0.34 -12.20 16 10 C 0.53 11.33 7.15 -10.99 -0.08 11.25 16 11 O -0.54 -13.61 15.47 5.56 0.09 -13.53 16 12 C 0.00 0.06 2.22 -92.92 -0.21 -0.15 16 13 H 0.04 0.96 6.80 -51.93 -0.35 0.61 16 14 C -0.14 -2.91 8.72 37.16 0.32 -2.58 16 15 C -0.59 -16.79 8.63 -34.44 -0.30 -17.09 16 16 H 0.07 2.41 7.02 -52.48 -0.37 2.04 16 17 C 0.03 0.83 5.29 -17.82 -0.09 0.74 16 18 N -0.91 -27.87 13.70 55.43 0.76 -27.11 16 19 Si 1.04 24.29 26.29 -169.99 -4.47 19.82 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.27 -5.72 5.76 56.52 0.33 -5.39 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.08 0.81 7.65 -51.93 -0.40 0.41 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.10 0.79 8.05 -51.93 -0.42 0.38 16 29 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 30 H 0.07 1.07 7.65 -51.93 -0.40 0.67 16 31 H 0.40 5.52 8.01 -40.82 -0.33 5.20 16 32 H 0.03 0.42 7.75 -51.93 -0.40 0.01 16 33 H 0.06 1.38 4.87 -51.93 -0.25 1.12 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.27 8.37 8.73 -40.82 -0.36 8.01 16 LS Contribution 298.52 15.07 4.50 4.50 Total: -1.00 -33.73 298.52 -4.64 -38.37 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -4.68 Total: 2.88 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -1.10 Total: -9.53 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.83 Total: -43.87 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.28 Total: -12.18 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -4.47 Total: 19.82 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.73 -4.64 -38.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596928497.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.047 kcal (2) G-P(sol) polarization free energy of solvation -33.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds