Wall clock time and date at job start Mon Mar 30 2020 03:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30178 * 126.80769 * 2 1 4 4 O 1.20917 * 111.60177 * 180.25222 * 3 2 1 5 5 C 1.34042 * 111.57336 * 359.74737 * 4 3 2 6 6 C 1.50694 * 126.77735 * 180.02562 * 5 4 3 7 7 C 1.35450 * 106.44076 * 359.97438 * 5 4 3 8 8 C 1.50700 * 128.00389 * 179.97438 * 7 5 4 9 9 N 1.46499 * 109.47257 * 90.00205 * 8 7 5 10 10 C 1.34775 * 120.00181 * 180.02562 * 9 8 7 11 11 O 1.21283 * 119.99917 * 359.97438 * 10 9 8 12 12 C 1.50703 * 120.00072 * 180.02562 * 10 9 8 13 13 H 1.09007 * 109.46560 * 299.99774 * 12 10 9 14 14 C 1.52998 * 109.47077 * 59.99775 * 12 10 9 15 15 C 1.50701 * 109.47151 * 180.02562 * 12 10 9 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 12 10 17 17 C 1.37871 * 119.99694 * 180.27762 * 15 12 10 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 12 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 12 20 20 H 1.48504 * 109.47266 * 60.00049 * 19 17 15 21 21 H 1.48504 * 109.46970 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47383 * 299.99456 * 19 17 15 23 23 H 1.09005 * 109.47364 * 270.16683 * 1 2 3 24 24 H 1.09001 * 109.46925 * 30.16531 * 1 2 3 25 25 H 1.08998 * 109.47401 * 150.16581 * 1 2 3 26 26 H 1.09003 * 109.47283 * 269.99677 * 6 5 4 27 27 H 1.08995 * 109.47711 * 29.99658 * 6 5 4 28 28 H 1.09003 * 109.47145 * 149.99994 * 6 5 4 29 29 H 1.09009 * 109.47352 * 330.00498 * 8 7 5 30 30 H 1.08998 * 109.47115 * 210.00459 * 8 7 5 31 31 H 0.97002 * 119.99778 * 359.97438 * 9 8 7 32 32 H 1.09005 * 109.46870 * 300.00040 * 14 12 10 33 33 H 1.08998 * 109.47156 * 59.99979 * 14 12 10 34 34 H 1.09004 * 109.46783 * 180.02562 * 14 12 10 35 35 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7251 -0.0049 5 6 3.6024 -0.6070 -0.0035 6 6 4.9020 -1.3698 -0.0078 7 6 2.3538 -1.1321 0.0038 8 6 1.9588 -2.5864 0.0077 9 7 1.8381 -3.0560 1.3901 10 6 1.4926 -4.3345 1.6399 11 8 1.2812 -5.0962 0.7201 12 6 1.3679 -4.8173 3.0620 13 1 2.3244 -4.6988 3.5711 14 6 0.2990 -3.9972 3.7871 15 6 0.9742 -6.2720 3.0659 16 1 0.8285 -6.7945 2.1320 17 6 0.7940 -6.9341 4.2617 18 7 0.9711 -6.2978 5.3990 19 14 0.2985 -8.7352 4.2666 20 1 1.3347 -9.5356 3.5659 21 1 0.1709 -9.2097 5.6680 22 1 -1.0035 -8.8923 3.5699 23 1 -0.3634 0.0030 1.0277 24 1 -0.3633 0.8885 -0.5164 25 1 -0.3634 -0.8914 -0.5112 26 1 5.2110 -1.5554 -1.0365 27 1 5.6681 -0.7854 0.5018 28 1 4.7671 -2.3205 0.5081 29 1 2.7198 -3.1711 -0.5094 30 1 1.0021 -2.7044 -0.5010 31 1 2.0076 -2.4468 2.1258 32 1 0.5843 -2.9452 3.7843 33 1 -0.6574 -4.1157 3.2780 34 1 0.2091 -4.3462 4.8159 35 1 0.8440 -6.7636 6.2402 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596928505.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:04 Heat of formation + Delta-G solvation = 6.638657 kcal Electronic energy + Delta-G solvation = -18440.519290 eV Core-core repulsion = 15441.526671 eV Total energy + Delta-G solvation = -2998.992619 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.01391 -38.84779 -35.85731 -33.98366 -33.73592 -32.91567 -30.51895 -28.78794 -28.29406 -26.29896 -25.13146 -22.60509 -21.48134 -20.23184 -19.42946 -17.73985 -17.14247 -16.28496 -15.97688 -15.09918 -14.89346 -14.46323 -14.03898 -13.73133 -13.55937 -13.25702 -12.98013 -12.88954 -12.70990 -12.55740 -12.21836 -12.13169 -11.47725 -11.05002 -11.00650 -10.75017 -10.69525 -10.26230 -10.04216 -9.95764 -9.40560 -8.99184 -8.59593 -8.50473 -8.32001 -6.03298 -4.06725 1.32144 2.04609 2.98652 3.36092 3.38715 3.44066 3.69723 4.01053 4.12478 4.35598 4.48181 4.73311 4.85696 5.16128 5.24361 5.29879 5.34690 5.41725 5.54799 5.65663 5.67715 5.85507 5.89035 6.08928 6.25699 6.61318 6.81902 6.91176 7.00644 7.46616 7.75064 7.98056 8.13530 8.18456 8.42435 9.01933 9.20235 9.58903 11.04194 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.036432 B = 0.004713 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.379169 B = 5939.105974 C = 6109.326375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.035 3.965 3 N -0.371 5.371 4 O 0.094 5.906 5 C -0.012 4.012 6 C -0.078 4.078 7 C -0.217 4.217 8 C 0.200 3.800 9 N -0.743 5.743 10 C 0.521 3.479 11 O -0.546 6.546 12 C 0.030 3.970 13 H 0.052 0.948 14 C -0.132 4.132 15 C -0.501 4.501 16 H 0.074 0.926 17 C 0.058 3.942 18 N -0.897 5.897 19 Si 0.901 3.099 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.396 0.604 32 H 0.011 0.989 33 H 0.031 0.969 34 H 0.093 0.907 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.517 12.210 -8.349 15.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.124 4.124 3 N -0.078 5.078 4 O 0.031 5.969 5 C -0.077 4.077 6 C -0.135 4.135 7 C -0.221 4.221 8 C 0.076 3.924 9 N -0.398 5.398 10 C 0.310 3.690 11 O -0.421 6.421 12 C 0.009 3.991 13 H 0.070 0.930 14 C -0.190 4.190 15 C -0.540 4.540 16 H 0.092 0.908 17 C -0.142 4.142 18 N -0.536 5.536 19 Si 0.729 3.271 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.202 1.202 23 H 0.102 0.898 24 H 0.094 0.906 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.230 0.770 32 H 0.030 0.970 33 H 0.050 0.950 34 H 0.112 0.888 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.139 12.914 -8.833 16.184 hybrid contribution -0.276 -1.281 0.413 1.374 sum 3.862 11.633 -8.420 14.871 Atomic orbital electron populations 1.20204 0.85816 1.03703 1.03803 1.23486 0.99023 0.88311 1.01600 1.73843 0.89234 1.23854 1.20852 1.84799 1.21734 1.22487 1.67906 1.24378 0.98334 0.83735 1.01204 1.20420 0.89819 0.99027 1.04249 1.21088 0.91807 0.97580 1.11617 1.19251 1.01578 0.85658 0.85951 1.46386 1.73784 1.13089 1.06575 1.22016 0.73340 0.79506 0.94093 1.90536 1.49303 1.54805 1.47483 1.18867 0.97593 0.96792 0.85815 0.93024 1.21744 0.97873 0.94791 1.04621 1.21102 1.46078 0.93447 0.93351 0.90825 1.24947 0.95349 0.98530 0.95395 1.69859 1.50099 1.36425 0.97254 0.86507 0.79269 0.84703 0.76654 1.20190 1.21398 1.20207 0.89805 0.90640 0.89787 0.89243 0.89666 0.88478 0.90838 0.90848 0.76986 0.97007 0.94987 0.88827 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.39 36.00 0.37 -0.46 16 2 C 0.04 0.46 7.33 -82.10 -0.60 -0.14 16 3 N -0.37 -5.19 12.07 33.42 0.40 -4.78 16 4 O 0.09 1.20 11.20 17.17 0.19 1.40 16 5 C -0.01 -0.14 7.49 -35.31 -0.26 -0.40 16 6 C -0.08 -0.63 10.25 36.00 0.37 -0.26 16 7 C -0.22 -2.77 5.69 -104.42 -0.59 -3.36 16 8 C 0.20 2.87 5.92 -5.19 -0.03 2.84 16 9 N -0.74 -12.48 5.44 -61.47 -0.33 -12.81 16 10 C 0.52 11.47 7.15 -10.98 -0.08 11.39 16 11 O -0.55 -13.78 15.46 5.56 0.09 -13.69 16 12 C 0.03 0.74 2.64 -92.92 -0.25 0.50 16 13 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 14 C -0.13 -3.00 8.86 37.16 0.33 -2.67 16 15 C -0.50 -14.03 8.38 -34.44 -0.29 -14.32 16 16 H 0.07 2.17 6.75 -52.49 -0.35 1.82 16 17 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 18 N -0.90 -24.95 11.31 55.43 0.63 -24.32 16 19 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.08 0.85 7.65 -51.93 -0.40 0.45 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.10 0.84 8.05 -51.93 -0.42 0.42 16 29 H 0.07 1.04 8.08 -51.92 -0.42 0.62 16 30 H 0.07 1.09 7.65 -51.93 -0.40 0.69 16 31 H 0.40 6.07 7.88 -40.82 -0.32 5.75 16 32 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 2.35 6.06 -51.93 -0.31 2.03 16 35 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 302.59 15.07 4.56 4.56 Total: -1.00 -31.51 302.59 -5.30 -36.81 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -4.69 Total: 1.63 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -1.13 Total: -5.38 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.70 Total: -41.92 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.28 Total: -12.30 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.51 -5.30 -36.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596928505.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.452 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds