Wall clock time and date at job start Mon Mar 30 2020 03:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30178 * 126.80769 * 2 1 4 4 O 1.20917 * 111.60177 * 180.25222 * 3 2 1 5 5 C 1.34042 * 111.57336 * 359.74737 * 4 3 2 6 6 C 1.50694 * 126.77735 * 180.02562 * 5 4 3 7 7 C 1.35450 * 106.44076 * 359.97438 * 5 4 3 8 8 C 1.50700 * 128.00389 * 179.97438 * 7 5 4 9 9 N 1.46499 * 109.47257 * 90.00205 * 8 7 5 10 10 C 1.34775 * 120.00181 * 180.02562 * 9 8 7 11 11 O 1.21283 * 119.99917 * 359.97438 * 10 9 8 12 12 C 1.50703 * 120.00072 * 180.02562 * 10 9 8 13 13 H 1.09007 * 109.46560 * 299.99774 * 12 10 9 14 14 C 1.52998 * 109.47077 * 59.99775 * 12 10 9 15 15 C 1.50701 * 109.47151 * 180.02562 * 12 10 9 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 12 10 17 17 C 1.37871 * 119.99694 * 180.27762 * 15 12 10 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 12 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 12 20 20 H 1.48504 * 109.47266 * 60.00049 * 19 17 15 21 21 H 1.48504 * 109.46970 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47383 * 299.99456 * 19 17 15 23 23 H 1.09005 * 109.47364 * 270.16683 * 1 2 3 24 24 H 1.09001 * 109.46925 * 30.16531 * 1 2 3 25 25 H 1.08998 * 109.47401 * 150.16581 * 1 2 3 26 26 H 1.09003 * 109.47283 * 269.99677 * 6 5 4 27 27 H 1.08995 * 109.47711 * 29.99658 * 6 5 4 28 28 H 1.09003 * 109.47145 * 149.99994 * 6 5 4 29 29 H 1.09009 * 109.47352 * 330.00498 * 8 7 5 30 30 H 1.08998 * 109.47115 * 210.00459 * 8 7 5 31 31 H 0.97002 * 119.99778 * 359.97438 * 9 8 7 32 32 H 1.09005 * 109.46870 * 300.00040 * 14 12 10 33 33 H 1.08998 * 109.47156 * 59.99979 * 14 12 10 34 34 H 1.09004 * 109.46783 * 180.02562 * 14 12 10 35 35 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7251 -0.0049 5 6 3.6024 -0.6070 -0.0035 6 6 4.9020 -1.3698 -0.0078 7 6 2.3538 -1.1321 0.0038 8 6 1.9588 -2.5864 0.0077 9 7 1.8381 -3.0560 1.3901 10 6 1.4926 -4.3345 1.6399 11 8 1.2812 -5.0962 0.7201 12 6 1.3679 -4.8173 3.0620 13 1 2.3244 -4.6988 3.5711 14 6 0.2990 -3.9972 3.7871 15 6 0.9742 -6.2720 3.0659 16 1 0.8285 -6.7945 2.1320 17 6 0.7940 -6.9341 4.2617 18 7 0.9711 -6.2978 5.3990 19 14 0.2985 -8.7352 4.2666 20 1 1.3347 -9.5356 3.5659 21 1 0.1709 -9.2097 5.6680 22 1 -1.0035 -8.8923 3.5699 23 1 -0.3634 0.0030 1.0277 24 1 -0.3633 0.8885 -0.5164 25 1 -0.3634 -0.8914 -0.5112 26 1 5.2110 -1.5554 -1.0365 27 1 5.6681 -0.7854 0.5018 28 1 4.7671 -2.3205 0.5081 29 1 2.7198 -3.1711 -0.5094 30 1 1.0021 -2.7044 -0.5010 31 1 2.0076 -2.4468 2.1258 32 1 0.5843 -2.9452 3.7843 33 1 -0.6574 -4.1157 3.2780 34 1 0.2091 -4.3462 4.8159 35 1 0.8440 -6.7636 6.2402 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596928505.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:03 Heat of formation + Delta-G solvation = -13.979000 kcal Electronic energy + Delta-G solvation = -18441.413339 eV Core-core repulsion = 15441.526671 eV Total energy + Delta-G solvation = -2999.886668 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.99993 -40.54095 -37.05801 -35.74136 -35.05310 -34.12699 -32.42579 -29.70778 -29.27650 -27.46707 -27.12667 -24.31503 -22.64240 -21.21082 -21.06301 -18.74804 -18.46217 -18.14237 -17.50702 -16.79048 -16.29199 -16.12865 -15.24957 -15.02525 -14.63417 -14.33258 -14.32501 -13.99241 -13.86255 -13.63626 -13.40080 -13.28744 -13.09166 -12.94480 -12.67557 -12.57587 -12.18301 -12.00144 -11.97778 -11.06952 -11.01257 -10.62019 -10.42948 -10.08285 -9.99426 -8.12483 -6.22848 0.38008 1.03318 1.44075 1.45072 1.53661 1.94714 2.08550 2.42016 2.66233 3.14259 3.17422 3.47248 3.72330 3.89919 4.28696 4.37065 4.58288 4.58923 4.66057 4.67201 4.72899 4.77293 4.82095 4.88383 4.96466 5.04508 5.13621 5.21606 5.51796 5.53520 5.76905 5.95955 6.23473 6.72876 6.87895 7.23084 7.42193 7.54560 8.92982 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.036432 B = 0.004713 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.379169 B = 5939.105974 C = 6109.326375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.031 3.969 3 N -0.393 5.393 4 O 0.089 5.911 5 C 0.006 3.994 6 C -0.079 4.079 7 C -0.235 4.235 8 C 0.207 3.793 9 N -0.721 5.721 10 C 0.526 3.474 11 O -0.583 6.583 12 C 0.025 3.975 13 H 0.042 0.958 14 C -0.120 4.120 15 C -0.528 4.528 16 H 0.051 0.949 17 C 0.020 3.980 18 N -0.912 5.912 19 Si 0.955 3.045 20 H -0.275 1.275 21 H -0.277 1.277 22 H -0.277 1.277 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.110 0.890 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.406 0.594 32 H 0.048 0.952 33 H 0.024 0.976 34 H 0.069 0.931 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.043 12.835 -8.593 16.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 N -0.102 5.102 4 O 0.028 5.972 5 C -0.059 4.059 6 C -0.136 4.136 7 C -0.239 4.239 8 C 0.083 3.917 9 N -0.375 5.375 10 C 0.315 3.685 11 O -0.462 6.462 12 C 0.003 3.997 13 H 0.060 0.940 14 C -0.178 4.178 15 C -0.566 4.566 16 H 0.069 0.931 17 C -0.179 4.179 18 N -0.551 5.551 19 Si 0.780 3.220 20 H -0.201 1.201 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.106 0.894 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.129 0.871 27 H 0.124 0.876 28 H 0.111 0.889 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.242 0.758 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.088 0.912 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.691 13.593 -9.068 17.000 hybrid contribution -0.381 -1.410 0.471 1.535 sum 4.311 12.182 -8.597 15.521 Atomic orbital electron populations 1.20299 0.84594 1.04503 1.04274 1.23847 1.00004 0.88172 1.00759 1.73846 0.89685 1.24470 1.22235 1.84786 1.21422 1.23054 1.67951 1.24931 0.99178 0.83292 0.98465 1.20622 0.88665 0.98512 1.05825 1.20885 0.92544 0.96532 1.13977 1.19235 1.01758 0.86724 0.83973 1.46078 1.71669 1.11363 1.08372 1.21464 0.73551 0.80827 0.92621 1.90518 1.51424 1.56281 1.48017 1.18801 0.97393 0.95715 0.87754 0.94040 1.21556 0.97020 0.96601 1.02597 1.21268 1.47101 0.95547 0.92687 0.93119 1.25586 0.95211 1.02070 0.95082 1.69942 1.50084 1.37593 0.97502 0.85666 0.78750 0.80471 0.77074 1.20076 1.20181 1.20202 0.89409 0.89528 0.89350 0.87134 0.87646 0.88893 0.90305 0.91096 0.75825 0.93360 0.95718 0.91175 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.58 10.39 71.23 0.74 -0.84 16 2 C 0.03 0.77 7.33 43.58 0.32 1.09 16 3 N -0.39 -10.43 12.07 -49.57 -0.60 -11.03 16 4 O 0.09 2.11 11.20 71.62 0.80 2.92 16 5 C 0.01 0.12 7.49 25.04 0.19 0.31 16 6 C -0.08 -1.05 10.25 71.23 0.73 -0.32 16 7 C -0.23 -5.57 5.69 -19.74 -0.11 -5.69 16 8 C 0.21 5.62 5.92 85.63 0.51 6.13 16 9 N -0.72 -23.21 5.44 -466.78 -2.54 -25.75 16 10 C 0.53 22.99 7.15 87.66 0.63 23.62 16 11 O -0.58 -29.64 15.46 -3.04 -0.05 -29.68 16 12 C 0.02 1.20 2.64 -12.29 -0.03 1.17 16 13 H 0.04 2.10 8.14 -2.38 -0.02 2.08 16 14 C -0.12 -5.35 8.86 71.98 0.64 -4.71 16 15 C -0.53 -29.92 8.38 25.60 0.21 -29.71 16 16 H 0.05 3.06 6.75 -2.91 -0.02 3.04 16 17 C 0.02 1.08 5.30 84.65 0.45 1.53 16 18 N -0.91 -50.61 11.31 21.45 0.24 -50.37 16 19 Si 0.95 44.27 29.54 68.60 2.03 46.29 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 24 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.09 1.66 7.65 -2.39 -0.02 1.65 16 26 H 0.11 1.07 8.14 -2.39 -0.02 1.06 16 27 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.09 1.38 8.05 -2.39 -0.02 1.36 16 29 H 0.08 2.11 8.08 -2.38 -0.02 2.09 16 30 H 0.07 2.01 7.65 -2.39 -0.02 1.99 16 31 H 0.41 11.63 7.88 -92.71 -0.73 10.90 16 32 H 0.05 1.75 7.57 -2.38 -0.02 1.73 16 33 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 3.49 6.06 -2.38 -0.01 3.48 16 35 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -67.31 302.59 4.53 -62.78 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.38 Total: 12.27 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 4.27 Total: -7.43 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -2.90 Total: -87.15 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: 0.75 Total: -26.77 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -67.31 4.53 -62.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596928505.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.801 kcal (2) G-P(sol) polarization free energy of solvation -67.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds