Wall clock time and date at job start Mon Mar 30 2020 04:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 109.47119 * 2 1 4 4 C 1.34327 * 126.44593 * 89.99678 * 3 2 1 5 5 N 1.34473 * 107.67083 * 179.76773 * 4 3 2 6 6 C 1.30254 * 108.70337 * 0.42449 * 5 4 3 7 7 C 1.50698 * 125.62431 * 179.83372 * 6 5 4 8 8 N 1.46501 * 109.46752 * 89.69527 * 7 6 5 9 9 C 1.34781 * 119.99823 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99926 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.00015 * 180.02562 * 9 8 7 12 12 H 1.09000 * 109.47438 * 60.00106 * 11 9 8 13 13 C 1.53009 * 109.47243 * 300.00449 * 11 9 8 14 14 C 1.50702 * 109.47462 * 180.02562 * 11 9 8 15 15 H 1.08002 * 119.99446 * 359.97438 * 14 11 9 16 16 C 1.37871 * 120.00072 * 180.02562 * 14 11 9 17 17 N 1.31516 * 119.99826 * 179.72119 * 16 14 11 18 18 Si 1.86800 * 120.00406 * 359.97438 * 16 14 11 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 O 1.33967 * 108.75850 * 359.57668 * 6 5 4 23 23 H 1.09006 * 109.47035 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47043 * 299.99664 * 1 2 3 25 25 H 1.08993 * 109.47120 * 60.00042 * 1 2 3 26 26 H 1.09001 * 109.47043 * 240.00336 * 2 1 3 27 27 H 1.09001 * 109.47349 * 120.00199 * 2 1 3 28 28 H 1.08002 * 126.16237 * 0.02709 * 4 3 2 29 29 H 1.09003 * 109.47112 * 329.70288 * 7 6 5 30 30 H 1.08993 * 109.47444 * 209.69912 * 7 6 5 31 31 H 0.97001 * 120.00707 * 0.02562 * 8 7 6 32 32 H 1.08990 * 109.47127 * 59.99727 * 13 11 9 33 33 H 1.08994 * 109.46846 * 180.02562 * 13 11 9 34 34 H 1.09001 * 109.46592 * 299.99600 * 13 11 9 35 35 H 0.96999 * 120.00128 * 180.27192 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2983 2.1731 1.0806 5 7 2.7276 3.3717 0.6478 6 6 2.7214 3.3722 -0.6548 7 6 3.1288 4.5263 -1.5341 8 7 4.5632 4.4403 -1.8193 9 6 5.1536 5.3728 -2.5929 10 8 4.4974 6.2833 -3.0525 11 6 6.6289 5.2840 -2.8868 12 1 6.8419 4.3449 -3.3975 13 6 7.4146 5.3405 -1.5750 14 6 7.0364 6.4382 -3.7660 15 1 6.3005 7.1632 -4.0808 16 6 8.3485 6.5679 -4.1692 17 7 8.7030 7.5720 -4.9410 18 14 9.6213 5.3134 -3.6253 19 1 10.2365 5.7546 -2.3477 20 1 8.9653 3.9956 -3.4297 21 1 10.6737 5.1929 -4.6659 22 8 2.2987 2.1757 -1.0840 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.1910 1.8687 2.1112 29 1 2.9157 5.4653 -1.0231 30 1 2.5694 4.4862 -2.4686 31 1 5.0880 3.7119 -1.4520 32 1 7.1200 4.5061 -0.9388 33 1 8.4817 5.2768 -1.7877 34 1 7.2017 6.2797 -1.0643 35 1 9.6252 7.6611 -5.2279 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597523916.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:40 Heat of formation + Delta-G solvation = -46.016279 kcal Electronic energy + Delta-G solvation = -18021.082622 eV Core-core repulsion = 15019.806713 eV Total energy + Delta-G solvation = -3001.275909 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.47024 -40.72306 -36.38518 -35.82232 -35.76950 -34.96695 -33.35973 -30.79351 -27.84498 -27.10192 -24.81080 -24.33767 -23.08396 -21.95523 -21.27149 -18.83883 -18.59900 -17.91178 -17.42901 -16.98215 -16.42617 -16.25208 -15.77968 -15.43969 -14.99228 -14.82486 -14.37842 -14.18573 -14.07681 -13.87009 -13.45316 -13.41996 -12.81489 -12.61737 -12.55338 -12.48968 -12.15451 -12.12176 -11.55121 -11.47115 -11.22649 -10.79361 -10.63781 -10.22655 -9.77385 -8.26307 -6.34440 0.22405 1.34786 1.40805 1.41959 1.51983 1.54508 1.77506 2.34836 2.38678 2.90085 3.07278 3.67686 3.96793 4.00716 4.06097 4.29738 4.31098 4.38813 4.41503 4.51023 4.59844 4.69933 4.76775 4.88810 4.99539 4.99601 5.18557 5.20472 5.27812 5.32854 5.43724 5.51454 6.23753 6.55154 6.61684 6.81636 7.24737 7.37934 8.91276 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.040224 B = 0.004233 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.939680 B = 6613.157269 C = 6873.760418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.038 4.038 3 C -0.032 4.032 4 C -0.056 4.056 5 N -0.482 5.482 6 C 0.161 3.839 7 C 0.223 3.777 8 N -0.722 5.722 9 C 0.535 3.465 10 O -0.574 6.574 11 C -0.006 4.006 12 H 0.072 0.928 13 C -0.140 4.140 14 C -0.522 4.522 15 H 0.033 0.967 16 C 0.008 3.992 17 N -0.952 5.952 18 Si 0.959 3.041 19 H -0.261 1.261 20 H -0.231 1.231 21 H -0.299 1.299 22 O -0.205 6.205 23 H 0.089 0.911 24 H 0.062 0.938 25 H 0.043 0.957 26 H 0.090 0.910 27 H 0.127 0.873 28 H 0.213 0.787 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.412 0.588 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.997 -20.888 14.219 28.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.075 4.075 3 C -0.085 4.085 4 C -0.194 4.194 5 N -0.213 5.213 6 C -0.045 4.045 7 C 0.099 3.901 8 N -0.378 5.378 9 C 0.324 3.676 10 O -0.452 6.452 11 C -0.028 4.028 12 H 0.090 0.910 13 C -0.197 4.197 14 C -0.561 4.561 15 H 0.052 0.948 16 C -0.189 4.189 17 N -0.592 5.592 18 Si 0.783 3.217 19 H -0.187 1.187 20 H -0.154 1.154 21 H -0.227 1.227 22 O -0.091 6.091 23 H 0.108 0.892 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.108 0.892 27 H 0.145 0.855 28 H 0.230 0.770 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.249 0.751 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.189 -19.634 14.098 27.536 hybrid contribution 0.632 -0.433 -0.493 0.911 sum -12.557 -20.067 13.605 27.303 Atomic orbital electron populations 1.21807 0.92986 1.03767 1.02130 1.20358 0.96890 0.84031 1.06242 1.24413 1.03083 0.97273 0.83769 1.23639 1.04828 0.88972 1.02009 1.70459 1.17458 1.24117 1.09240 1.25808 1.01961 0.86580 0.90131 1.19362 0.82622 0.91085 0.97008 1.45918 1.08678 1.30048 1.53113 1.21048 0.90682 0.79986 0.75864 1.90593 1.66544 1.35555 1.52495 1.19269 0.88494 0.98937 0.96108 0.91008 1.22025 0.99298 1.02064 0.96341 1.21097 0.94976 1.09902 1.30094 0.94844 1.26008 1.00662 0.97710 0.94503 1.70071 1.18936 1.32986 1.37186 0.85720 0.77869 0.80725 0.77349 1.18704 1.15424 1.22694 1.84432 1.63646 1.23354 1.37690 0.89231 0.91900 0.93751 0.89173 0.85544 0.77006 0.87843 0.88555 0.75133 0.90072 0.93457 0.93300 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.89 71.98 0.71 -0.51 16 2 C -0.04 -0.35 6.49 29.85 0.19 -0.15 16 3 C -0.03 -0.57 6.64 24.79 0.16 -0.41 16 4 C -0.06 -1.07 11.80 83.39 0.98 -0.08 16 5 N -0.48 -12.66 11.29 -303.83 -3.43 -16.09 16 6 C 0.16 4.22 7.71 88.34 0.68 4.90 16 7 C 0.22 6.41 6.30 85.63 0.54 6.94 16 8 N -0.72 -23.13 5.44 -466.79 -2.54 -25.67 16 9 C 0.54 23.28 7.15 87.66 0.63 23.90 16 10 O -0.57 -30.30 15.46 -3.04 -0.05 -30.35 16 11 C -0.01 -0.30 2.23 -12.28 -0.03 -0.32 16 12 H 0.07 3.04 7.20 -2.39 -0.02 3.03 16 13 C -0.14 -5.41 8.57 71.99 0.62 -4.79 16 14 C -0.52 -31.23 8.95 25.60 0.23 -31.00 16 15 H 0.03 2.35 7.00 -2.91 -0.02 2.33 16 16 C 0.01 0.45 5.45 84.65 0.46 0.92 16 17 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 18 Si 0.96 43.13 24.37 68.60 1.67 44.80 16 19 H -0.26 -11.04 6.88 99.48 0.68 -10.35 16 20 H -0.23 -8.99 6.52 99.48 0.65 -8.34 16 21 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 22 O -0.21 -4.93 10.78 -3.80 -0.04 -4.97 16 23 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 24 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.21 2.53 8.06 -2.91 -0.02 2.51 16 29 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.41 11.02 7.88 -92.71 -0.73 10.29 16 32 H 0.08 2.36 7.56 -2.39 -0.02 2.34 16 33 H 0.05 1.85 3.28 -2.39 -0.01 1.85 16 34 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -79.01 297.40 1.39 -77.63 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.30 Total: 16.17 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 5.18 Total: -0.61 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -5.67 Total: -102.67 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.09 Total: -35.32 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.67 Total: 44.80 kcal Total: -79.01 1.39 -77.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597523916.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.609 kcal (2) G-P(sol) polarization free energy of solvation -79.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds