Wall clock time and date at job start Mon Mar 30 2020 04:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30258 * 125.61823 * 2 1 4 4 C 1.34472 * 108.70247 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.16629 * 180.02562 * 4 3 2 6 6 C 1.34327 * 107.67005 * 0.02562 * 4 3 2 7 7 C 1.50701 * 126.44653 * 180.02562 * 6 4 3 8 8 N 1.46500 * 109.47104 * 89.98273 * 7 6 4 9 9 C 1.34778 * 120.00054 * 180.02562 * 8 7 6 10 10 O 1.21271 * 119.99830 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99919 * 179.97438 * 9 8 7 12 12 H 1.09001 * 109.46950 * 60.00092 * 11 9 8 13 13 C 1.53004 * 109.46968 * 299.99857 * 11 9 8 14 14 C 1.50701 * 109.46969 * 179.97438 * 11 9 8 15 15 H 1.07997 * 120.00043 * 0.02562 * 14 11 9 16 16 C 1.37874 * 119.99936 * 180.02562 * 14 11 9 17 17 N 1.31514 * 120.00153 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 120.00095 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47146 * 59.99879 * 18 16 14 20 20 H 1.48502 * 109.47343 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47192 * 300.00071 * 18 16 14 22 22 O 1.33964 * 125.62261 * 180.02562 * 2 1 3 23 23 H 1.09004 * 109.46567 * 269.97188 * 1 2 3 24 24 H 1.09003 * 109.47188 * 29.97223 * 1 2 3 25 25 H 1.09000 * 109.46919 * 149.97707 * 1 2 3 26 26 H 1.08998 * 109.47177 * 269.97578 * 5 4 3 27 27 H 1.09005 * 109.46916 * 29.98023 * 5 4 3 28 28 H 1.09004 * 109.46850 * 149.97548 * 5 4 3 29 29 H 1.08999 * 109.47037 * 209.97802 * 7 6 4 30 30 H 1.09001 * 109.47192 * 329.98291 * 7 6 4 31 31 H 0.97006 * 119.99800 * 359.97438 * 8 7 6 32 32 H 1.08992 * 109.47383 * 300.00189 * 13 11 9 33 33 H 1.08999 * 109.46815 * 60.00337 * 13 11 9 34 34 H 1.09002 * 109.46970 * 179.97438 * 13 11 9 35 35 H 0.96993 * 120.00295 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 -0.0006 5 6 4.7570 1.5728 -0.0002 6 6 3.5699 -0.6755 -0.0015 7 6 4.7938 -1.5548 -0.0018 8 7 5.1903 -1.8403 1.3793 9 6 6.2668 -2.6131 1.6252 10 8 6.9074 -3.0717 0.7033 11 6 6.6751 -2.9063 3.0460 12 1 5.8609 -3.4175 3.5598 13 6 6.9894 -1.5942 3.7674 14 6 7.8989 -3.7856 3.0456 15 1 8.3375 -4.1003 2.1102 16 6 8.4587 -4.1884 4.2395 17 7 7.9249 -3.8048 5.3786 18 14 9.9761 -5.2778 4.2391 19 1 11.0855 -4.5811 3.5397 20 1 10.3784 -5.5669 5.6391 21 1 9.6713 -6.5510 3.5382 22 8 2.2873 -1.0890 -0.0005 23 1 -0.3632 -0.0005 1.0277 24 1 -0.3634 0.8903 -0.5134 25 1 -0.3633 -0.8898 -0.5142 26 1 5.0475 1.7914 -1.0278 27 1 4.5129 2.5024 0.5140 28 1 5.5821 1.0793 0.5135 29 1 4.5696 -2.4893 -0.5160 30 1 5.6081 -1.0437 -0.5154 31 1 4.6785 -1.4725 2.1167 32 1 7.8034 -1.0830 3.2536 33 1 6.1039 -0.9586 3.7677 34 1 7.2842 -1.8062 4.7952 35 1 8.3190 -4.0879 6.2185 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597655051.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:07 Heat of formation + Delta-G solvation = -29.211335 kcal Electronic energy + Delta-G solvation = -18249.316463 eV Core-core repulsion = 15248.769271 eV Total energy + Delta-G solvation = -3000.547192 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.45885 -38.85180 -35.31800 -34.77197 -33.75079 -32.56336 -30.60719 -29.50961 -28.13127 -25.14697 -24.51808 -22.29084 -21.84003 -20.70747 -19.50426 -17.06024 -16.88338 -16.24512 -15.88969 -15.08327 -15.00852 -14.48607 -14.12588 -13.75379 -13.47965 -13.22797 -13.01542 -12.91845 -12.83138 -12.69812 -12.22667 -12.02563 -11.49409 -11.01098 -10.98560 -10.75519 -10.70558 -10.61551 -10.26976 -9.97598 -9.01667 -8.96942 -8.60513 -8.50119 -8.30825 -6.03566 -4.07137 1.24468 2.47740 2.52796 3.36348 3.38843 3.44200 3.65341 3.81345 3.97005 4.47545 4.57748 4.71936 5.00523 5.09653 5.16858 5.29645 5.33866 5.49604 5.53109 5.64437 5.71879 5.92082 6.03453 6.19351 6.26732 6.60705 6.81186 6.85962 6.93649 7.45567 7.62150 7.74200 7.95972 8.10594 8.38455 9.01332 9.14569 9.58385 11.04018 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.040534 B = 0.004333 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.606082 B = 6461.088166 C = 6501.197924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.190 3.810 3 N -0.484 5.484 4 C 0.009 3.991 5 C -0.076 4.076 6 C -0.063 4.063 7 C 0.208 3.792 8 N -0.745 5.745 9 C 0.523 3.477 10 O -0.543 6.543 11 C 0.031 3.969 12 H 0.053 0.947 13 C -0.132 4.132 14 C -0.502 4.502 15 H 0.074 0.926 16 C 0.059 3.941 17 N -0.897 5.897 18 Si 0.901 3.099 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.276 1.276 22 O -0.195 6.195 23 H 0.093 0.907 24 H 0.100 0.900 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.399 0.601 32 H 0.032 0.968 33 H 0.011 0.989 34 H 0.093 0.907 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.895 9.180 -8.245 17.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.016 4.016 3 N -0.215 5.215 4 C -0.112 4.112 5 C -0.133 4.133 6 C -0.116 4.116 7 C 0.084 3.916 8 N -0.401 5.401 9 C 0.313 3.687 10 O -0.418 6.418 11 C 0.010 3.990 12 H 0.071 0.929 13 C -0.190 4.190 14 C -0.541 4.541 15 H 0.092 0.908 16 C -0.142 4.142 17 N -0.536 5.536 18 Si 0.729 3.271 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.202 1.202 22 O -0.082 6.082 23 H 0.112 0.888 24 H 0.118 0.882 25 H 0.107 0.893 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.233 0.767 32 H 0.051 0.949 33 H 0.030 0.970 34 H 0.112 0.888 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.619 9.359 -8.732 17.975 hybrid contribution 0.636 -1.032 0.401 1.277 sum -11.983 8.328 -8.331 16.803 Atomic orbital electron populations 1.20255 0.81293 1.05012 1.04765 1.26266 0.96463 0.78802 1.00118 1.70372 1.01640 1.30304 1.19189 1.21594 0.93400 0.92087 1.04136 1.20196 0.91995 0.98076 1.03031 1.23256 0.83594 0.94918 1.09790 1.19434 0.88041 0.97213 0.86894 1.46435 1.32461 1.54986 1.06210 1.22069 0.77356 0.75064 0.94244 1.90540 1.53046 1.51026 1.47232 1.18884 0.98672 0.95864 0.85610 0.92919 1.21745 0.97522 0.95131 1.04625 1.21098 1.10476 1.29090 0.93419 0.90775 1.24949 0.97568 0.96325 0.95362 1.69859 1.40886 1.45598 0.97261 0.86494 0.82940 0.80959 0.76671 1.20172 1.21380 1.20184 1.84407 1.16559 1.37507 1.69747 0.88837 0.88187 0.89329 0.90576 0.90446 0.90062 0.90240 0.88618 0.76736 0.94881 0.96954 0.88796 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.38 10.51 36.01 0.38 -0.01 16 2 C 0.19 2.32 8.34 -12.94 -0.11 2.21 16 3 N -0.48 -6.74 11.29 -7.36 -0.08 -6.83 16 4 C 0.01 0.12 7.11 -82.82 -0.59 -0.47 16 5 C -0.08 -0.85 10.05 36.01 0.36 -0.49 16 6 C -0.06 -0.89 6.75 -35.69 -0.24 -1.13 16 7 C 0.21 3.16 5.83 -5.19 -0.03 3.13 16 8 N -0.74 -13.07 5.44 -61.47 -0.33 -13.40 16 9 C 0.52 11.75 7.15 -10.98 -0.08 11.67 16 10 O -0.54 -13.86 15.46 5.56 0.09 -13.77 16 11 C 0.03 0.76 2.64 -92.92 -0.25 0.52 16 12 H 0.05 1.36 8.14 -51.93 -0.42 0.93 16 13 C -0.13 -3.01 8.87 37.16 0.33 -2.68 16 14 C -0.50 -14.18 8.37 -34.44 -0.29 -14.47 16 15 H 0.07 2.20 6.75 -52.49 -0.35 1.84 16 16 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 17 N -0.90 -25.11 11.32 55.43 0.63 -24.48 16 18 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 O -0.20 -2.74 10.78 5.36 0.06 -2.68 16 23 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.93 7.79 -51.93 -0.40 0.52 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.10 1.39 7.80 -51.93 -0.40 0.98 16 31 H 0.40 6.42 7.88 -40.82 -0.32 6.10 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 34 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 35 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 303.37 15.07 4.57 4.57 Total: -1.00 -32.47 303.37 -5.41 -37.88 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -4.71 Total: 2.17 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -0.60 Total: -0.19 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.21 Total: -44.71 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.14 Total: -16.45 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.47 -5.41 -37.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597655051.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.665 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds