Wall clock time and date at job start Mon Mar 30 2020 04:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30258 * 125.61823 * 2 1 4 4 C 1.34472 * 108.70247 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.16629 * 180.02562 * 4 3 2 6 6 C 1.34327 * 107.67005 * 0.02562 * 4 3 2 7 7 C 1.50701 * 126.44653 * 180.02562 * 6 4 3 8 8 N 1.46500 * 109.47104 * 89.98273 * 7 6 4 9 9 C 1.34778 * 120.00054 * 180.02562 * 8 7 6 10 10 O 1.21271 * 119.99830 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99919 * 179.97438 * 9 8 7 12 12 H 1.09001 * 109.46950 * 60.00092 * 11 9 8 13 13 C 1.53004 * 109.46968 * 299.99857 * 11 9 8 14 14 C 1.50701 * 109.46969 * 179.97438 * 11 9 8 15 15 H 1.07997 * 120.00043 * 0.02562 * 14 11 9 16 16 C 1.37874 * 119.99936 * 180.02562 * 14 11 9 17 17 N 1.31514 * 120.00153 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 120.00095 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47146 * 59.99879 * 18 16 14 20 20 H 1.48502 * 109.47343 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47192 * 300.00071 * 18 16 14 22 22 O 1.33964 * 125.62261 * 180.02562 * 2 1 3 23 23 H 1.09004 * 109.46567 * 269.97188 * 1 2 3 24 24 H 1.09003 * 109.47188 * 29.97223 * 1 2 3 25 25 H 1.09000 * 109.46919 * 149.97707 * 1 2 3 26 26 H 1.08998 * 109.47177 * 269.97578 * 5 4 3 27 27 H 1.09005 * 109.46916 * 29.98023 * 5 4 3 28 28 H 1.09004 * 109.46850 * 149.97548 * 5 4 3 29 29 H 1.08999 * 109.47037 * 209.97802 * 7 6 4 30 30 H 1.09001 * 109.47192 * 329.98291 * 7 6 4 31 31 H 0.97006 * 119.99800 * 359.97438 * 8 7 6 32 32 H 1.08992 * 109.47383 * 300.00189 * 13 11 9 33 33 H 1.08999 * 109.46815 * 60.00337 * 13 11 9 34 34 H 1.09002 * 109.46970 * 179.97438 * 13 11 9 35 35 H 0.96993 * 120.00295 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 -0.0006 5 6 4.7570 1.5728 -0.0002 6 6 3.5699 -0.6755 -0.0015 7 6 4.7938 -1.5548 -0.0018 8 7 5.1903 -1.8403 1.3793 9 6 6.2668 -2.6131 1.6252 10 8 6.9074 -3.0717 0.7033 11 6 6.6751 -2.9063 3.0460 12 1 5.8609 -3.4175 3.5598 13 6 6.9894 -1.5942 3.7674 14 6 7.8989 -3.7856 3.0456 15 1 8.3375 -4.1003 2.1102 16 6 8.4587 -4.1884 4.2395 17 7 7.9249 -3.8048 5.3786 18 14 9.9761 -5.2778 4.2391 19 1 11.0855 -4.5811 3.5397 20 1 10.3784 -5.5669 5.6391 21 1 9.6713 -6.5510 3.5382 22 8 2.2873 -1.0890 -0.0005 23 1 -0.3632 -0.0005 1.0277 24 1 -0.3634 0.8903 -0.5134 25 1 -0.3633 -0.8898 -0.5142 26 1 5.0475 1.7914 -1.0278 27 1 4.5129 2.5024 0.5140 28 1 5.5821 1.0793 0.5135 29 1 4.5696 -2.4893 -0.5160 30 1 5.6081 -1.0437 -0.5154 31 1 4.6785 -1.4725 2.1167 32 1 7.8034 -1.0830 3.2536 33 1 6.1039 -0.9586 3.7677 34 1 7.2842 -1.8062 4.7952 35 1 8.3190 -4.0879 6.2185 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597655051.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:07 Heat of formation + Delta-G solvation = -53.482640 kcal Electronic energy + Delta-G solvation = -18250.368945 eV Core-core repulsion = 15248.769271 eV Total energy + Delta-G solvation = -3001.599674 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.46678 -40.59911 -36.44932 -36.10357 -35.75893 -33.67852 -32.46875 -30.34258 -29.35479 -27.19529 -25.70727 -24.03212 -22.81825 -21.73861 -21.21308 -18.54207 -18.18200 -17.97550 -17.24239 -16.76961 -16.33860 -16.26309 -15.38171 -15.00163 -14.62717 -14.47455 -14.25885 -14.11239 -13.84993 -13.66905 -13.46930 -13.36141 -12.96176 -12.91303 -12.70301 -12.59814 -12.20309 -12.00537 -11.94776 -11.65197 -11.05470 -10.69206 -10.42189 -10.13835 -9.66551 -8.14435 -6.25281 0.21271 1.42879 1.44290 1.47679 1.53052 1.56070 1.86318 2.37660 2.55856 2.99492 3.15403 3.53025 3.75378 4.05400 4.18705 4.40334 4.54703 4.62019 4.63777 4.69056 4.73021 4.74993 4.89215 4.94023 4.97802 5.01458 5.13652 5.36464 5.38505 5.48887 5.74358 5.92953 6.19621 6.61380 6.64265 6.84021 7.36789 7.46979 8.91247 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.040534 B = 0.004333 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.606082 B = 6461.088166 C = 6501.197924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.200 3.800 3 N -0.511 5.511 4 C 0.012 3.988 5 C -0.076 4.076 6 C -0.085 4.085 7 C 0.214 3.786 8 N -0.725 5.725 9 C 0.528 3.472 10 O -0.579 6.579 11 C 0.024 3.976 12 H 0.040 0.960 13 C -0.119 4.119 14 C -0.530 4.530 15 H 0.052 0.948 16 C 0.020 3.980 17 N -0.912 5.912 18 Si 0.956 3.044 19 H -0.275 1.275 20 H -0.276 1.276 21 H -0.276 1.276 22 O -0.209 6.209 23 H 0.111 0.889 24 H 0.115 0.885 25 H 0.107 0.893 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.408 0.592 32 H 0.027 0.973 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.984 10.026 -8.442 19.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.006 4.006 3 N -0.242 5.242 4 C -0.109 4.109 5 C -0.133 4.133 6 C -0.137 4.137 7 C 0.091 3.909 8 N -0.379 5.379 9 C 0.317 3.683 10 O -0.458 6.458 11 C 0.003 3.997 12 H 0.058 0.942 13 C -0.177 4.177 14 C -0.568 4.568 15 H 0.070 0.930 16 C -0.179 4.179 17 N -0.551 5.551 18 Si 0.782 3.218 19 H -0.200 1.200 20 H -0.201 1.201 21 H -0.202 1.202 22 O -0.096 6.096 23 H 0.129 0.871 24 H 0.134 0.866 25 H 0.125 0.875 26 H 0.110 0.890 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.122 0.878 31 H 0.243 0.757 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.747 10.242 -8.920 19.325 hybrid contribution 0.828 -1.237 0.445 1.554 sum -12.919 9.005 -8.475 17.883 Atomic orbital electron populations 1.20601 0.77734 1.06709 1.06349 1.27416 0.98125 0.77933 0.97166 1.70440 1.01834 1.31056 1.20911 1.21977 0.94167 0.92190 1.02535 1.20283 0.91013 0.97892 1.04118 1.22935 0.83511 0.94825 1.12475 1.19406 0.89095 0.97445 0.84955 1.46123 1.30707 1.53130 1.07975 1.21536 0.78279 0.75588 0.92872 1.90520 1.54671 1.52831 1.47756 1.18822 0.97144 0.96263 0.87443 0.94228 1.21551 0.98901 0.94643 1.02597 1.21264 1.12136 1.30607 0.92823 0.93009 1.25603 0.99997 0.97334 0.95012 1.69944 1.41710 1.45912 0.97531 0.85637 0.79804 0.79216 0.77140 1.20009 1.20079 1.20179 1.84406 1.16635 1.38393 1.70216 0.87091 0.86616 0.87453 0.89032 0.89710 0.90300 0.90699 0.87753 0.75674 0.95350 0.93336 0.91115 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.51 71.24 0.75 0.14 16 2 C 0.20 4.47 8.34 88.34 0.74 5.20 16 3 N -0.51 -13.31 11.29 -291.98 -3.30 -16.61 16 4 C 0.01 0.31 7.11 41.26 0.29 0.60 16 5 C -0.08 -1.58 10.05 71.24 0.72 -0.87 16 6 C -0.09 -2.32 6.75 24.79 0.17 -2.16 16 7 C 0.21 6.36 5.83 85.63 0.50 6.85 16 8 N -0.72 -24.93 5.44 -466.79 -2.54 -27.47 16 9 C 0.53 23.84 7.15 87.66 0.63 24.46 16 10 O -0.58 -30.01 15.46 -3.00 -0.05 -30.05 16 11 C 0.02 1.22 2.64 -12.28 -0.03 1.19 16 12 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 13 C -0.12 -5.37 8.87 71.98 0.64 -4.73 16 14 C -0.53 -30.46 8.37 25.60 0.21 -30.25 16 15 H 0.05 3.16 6.75 -2.91 -0.02 3.14 16 16 C 0.02 1.10 5.30 84.65 0.45 1.55 16 17 N -0.91 -51.09 11.32 21.45 0.24 -50.85 16 18 Si 0.96 44.66 29.54 68.60 2.03 46.68 16 19 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 22 O -0.21 -5.55 10.78 -3.73 -0.04 -5.59 16 23 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 24 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.08 1.68 7.79 -2.38 -0.02 1.66 16 29 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.10 2.94 7.80 -2.39 -0.02 2.92 16 31 H 0.41 12.61 7.88 -92.70 -0.73 11.88 16 32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.05 1.78 7.56 -2.39 -0.02 1.76 16 34 H 0.07 3.55 6.07 -2.39 -0.01 3.53 16 35 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -69.76 303.37 1.78 -67.98 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.37 Total: 13.90 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 5.06 Total: 2.00 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -5.59 Total: -94.93 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -0.09 Total: -35.65 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -69.76 1.78 -67.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597655051.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.502 kcal (2) G-P(sol) polarization free energy of solvation -69.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds