Wall clock time and date at job start Mon Mar 30 2020 04:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.34481 * 126.16670 * 2 1 4 4 C 1.30261 * 108.69844 * 179.74231 * 3 2 1 5 5 C 1.50708 * 125.61743 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.46877 * 299.97459 * 5 4 3 7 7 C 1.53001 * 109.46856 * 59.97307 * 5 4 3 8 8 O 1.33964 * 108.76525 * 359.97438 * 4 3 2 9 9 C 1.34329 * 126.16676 * 179.70018 * 2 1 3 10 10 C 1.50705 * 126.44110 * 0.27693 * 9 2 1 11 11 N 1.46497 * 109.47188 * 90.00022 * 10 9 2 12 12 C 1.34774 * 120.00001 * 179.97438 * 11 10 9 13 13 O 1.21683 * 120.00069 * 0.02562 * 12 11 10 14 14 C 1.46380 * 119.99913 * 180.02562 * 12 11 10 15 15 H 1.07999 * 120.00132 * 353.94147 * 14 12 11 16 16 C 1.40049 * 119.99684 * 173.94177 * 14 12 11 17 17 N 1.30666 * 120.00178 * 6.15586 * 16 14 12 18 18 Si 1.86802 * 119.99601 * 186.14862 * 16 14 12 19 19 H 1.48505 * 109.46840 * 94.98668 * 18 16 14 20 20 H 1.48503 * 109.47089 * 214.98137 * 18 16 14 21 21 H 1.48493 * 109.47701 * 334.98792 * 18 16 14 22 22 H 1.08998 * 109.47448 * 90.01702 * 1 2 3 23 23 H 1.09003 * 109.47365 * 210.02585 * 1 2 3 24 24 H 1.09010 * 109.46669 * 330.01874 * 1 2 3 25 25 H 1.08996 * 109.46717 * 179.97438 * 5 4 3 26 26 H 1.09006 * 109.46817 * 60.00199 * 6 5 4 27 27 H 1.09001 * 109.46817 * 179.97438 * 6 5 4 28 28 H 1.08996 * 109.47429 * 300.00180 * 6 5 4 29 29 H 1.09005 * 109.47266 * 60.00036 * 7 5 4 30 30 H 1.09004 * 109.47011 * 179.97438 * 7 5 4 31 31 H 1.08996 * 109.47236 * 300.00055 * 7 5 4 32 32 H 1.08995 * 109.47370 * 210.00316 * 10 9 2 33 33 H 1.09001 * 109.46866 * 330.00387 * 10 9 2 34 34 H 0.96994 * 120.00039 * 0.02562 * 11 10 9 35 35 H 0.97002 * 120.00207 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6947 0.0055 5 6 4.7480 1.5999 0.0081 6 6 4.7276 2.4796 -1.2436 7 6 4.7175 2.4861 1.2549 8 8 3.5734 -0.6446 0.0098 9 6 2.2997 -1.0844 0.0057 10 6 1.8492 -2.5226 0.0073 11 7 1.7086 -2.9919 -1.3733 12 6 1.3140 -4.2571 -1.6181 13 8 1.0741 -5.0095 -0.6923 14 6 1.1741 -4.7262 -2.9976 15 1 1.2914 -4.0336 -3.8180 16 6 0.8882 -6.0731 -3.2536 17 7 0.6275 -6.8852 -2.2637 18 14 0.8792 -6.7084 -5.0102 19 1 2.2049 -7.2958 -5.3309 20 1 -0.1711 -7.7482 -5.1552 21 1 0.5968 -5.5864 -5.9411 22 1 -0.3634 -0.0003 -1.0276 23 1 -0.3634 -0.8898 0.5142 24 1 -0.3633 0.8903 0.5136 25 1 5.6557 0.9964 0.0133 26 1 3.8198 3.0830 -1.2487 27 1 5.5989 3.1346 -1.2415 28 1 4.7493 1.8483 -2.1318 29 1 4.7320 1.8593 2.1466 30 1 5.5893 3.1405 1.2570 31 1 3.8098 3.0894 1.2497 32 1 2.5878 -3.1341 0.5255 33 1 0.8893 -2.6020 0.5176 34 1 1.9003 -2.3923 -2.1112 35 1 0.4298 -7.8182 -2.4410 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597684192.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:25 Heat of formation + Delta-G solvation = -37.239551 kcal Electronic energy + Delta-G solvation = -18152.703343 eV Core-core repulsion = 15151.808022 eV Total energy + Delta-G solvation = -3000.895321 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.20651 -37.40276 -35.96095 -34.97444 -33.60535 -32.39090 -30.68818 -28.20090 -27.41418 -26.41881 -24.89957 -22.71242 -20.86443 -20.21814 -19.77021 -17.54289 -16.56397 -16.46902 -15.40630 -15.02368 -14.77630 -14.32403 -14.05959 -13.61176 -13.35999 -13.11042 -13.05058 -12.73215 -12.41906 -12.29798 -11.89454 -11.85566 -11.53065 -11.51553 -11.22050 -11.18564 -10.97297 -10.70567 -10.51655 -10.31043 -10.24801 -8.89118 -8.52696 -7.66313 -7.65467 -6.24461 -4.68992 1.56363 2.74208 2.77396 3.12165 3.19575 3.23233 3.97695 4.08810 4.52797 4.62700 4.81750 4.82460 4.94236 5.06464 5.12190 5.39531 5.40761 5.55982 5.59864 5.62019 5.76720 5.77552 5.82356 5.96016 5.99384 6.04337 6.09569 6.24728 6.42431 6.54573 7.39720 7.80193 7.89776 7.95177 8.26736 8.97737 9.41738 10.52442 10.70326 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.033447 B = 0.004435 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.952188 B = 6312.224427 C = 6604.930357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.005 4.005 3 N -0.476 5.476 4 C 0.185 3.815 5 C 0.006 3.994 6 C -0.143 4.143 7 C -0.142 4.142 8 O -0.196 6.196 9 C -0.047 4.047 10 C 0.217 3.783 11 N -0.763 5.763 12 C 0.556 3.444 13 O -0.579 6.579 14 C -0.543 4.543 15 H 0.069 0.931 16 C 0.088 3.912 17 N -0.766 5.766 18 Si 0.909 3.091 19 H -0.272 1.272 20 H -0.278 1.278 21 H -0.264 1.264 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.095 0.905 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.383 0.617 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.079 16.317 2.924 17.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.126 4.126 3 N -0.206 5.206 4 C -0.022 4.022 5 C -0.014 4.014 6 C -0.200 4.200 7 C -0.200 4.200 8 O -0.082 6.082 9 C -0.100 4.100 10 C 0.092 3.908 11 N -0.420 5.420 12 C 0.361 3.639 13 O -0.462 6.462 14 C -0.580 4.580 15 H 0.087 0.913 16 C -0.132 4.132 17 N -0.395 5.395 18 Si 0.734 3.266 19 H -0.198 1.198 20 H -0.204 1.204 21 H -0.188 1.188 22 H 0.094 0.906 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.114 0.886 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.214 0.786 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.687 16.143 3.696 17.510 hybrid contribution 0.373 -0.767 -1.195 1.468 sum 6.060 15.376 2.501 16.715 Atomic orbital electron populations 1.20119 0.86361 1.03039 1.03140 1.21530 0.97965 0.87457 1.05606 1.70245 1.00354 1.31382 1.18650 1.26131 0.95493 0.79355 1.01221 1.19586 0.90600 0.93174 0.98025 1.21830 1.03081 0.99372 0.95754 1.21827 1.03100 0.99309 0.95733 1.84420 1.30592 1.23627 1.69592 1.23605 0.80333 0.98431 1.07642 1.19236 1.00179 0.82674 0.88673 1.46279 1.76451 1.15362 1.03907 1.18265 0.76620 0.78302 0.90739 1.90608 1.54933 1.54261 1.46387 1.20854 1.51682 0.94693 0.90805 0.91292 1.25703 0.92564 0.96663 0.98268 1.70018 1.32751 1.04678 1.32040 0.86334 0.78426 0.79032 0.82838 1.19766 1.20378 1.18849 0.90554 0.90426 0.91025 0.88640 0.91251 0.91194 0.92163 0.92321 0.91192 0.91250 0.91497 0.89720 0.78566 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.22 36.00 0.37 -0.59 16 2 C -0.01 -0.08 7.11 -82.81 -0.59 -0.67 16 3 N -0.48 -7.60 11.29 -7.35 -0.08 -7.68 16 4 C 0.19 2.74 6.85 -12.94 -0.09 2.65 16 5 C 0.01 0.06 3.39 -91.77 -0.31 -0.25 16 6 C -0.14 -1.28 9.18 37.16 0.34 -0.94 16 7 C -0.14 -1.22 9.18 37.16 0.34 -0.88 16 8 O -0.20 -3.36 10.78 5.37 0.06 -3.31 16 9 C -0.05 -0.83 6.75 -35.69 -0.24 -1.07 16 10 C 0.22 4.31 6.01 -5.19 -0.03 4.28 16 11 N -0.76 -17.36 5.54 -62.90 -0.35 -17.71 16 12 C 0.56 15.75 7.74 -12.99 -0.10 15.65 16 13 O -0.58 -18.53 15.04 5.20 0.08 -18.45 16 14 C -0.54 -15.31 9.54 -35.63 -0.34 -15.65 16 15 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 16 C 0.09 2.44 5.49 -17.37 -0.10 2.35 16 17 N -0.77 -22.80 11.85 55.55 0.66 -22.14 16 18 Si 0.91 20.03 29.56 -169.99 -5.03 15.01 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 22 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.08 1.05 7.16 -51.93 -0.37 0.68 16 24 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 25 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.09 1.65 7.16 -51.93 -0.37 1.28 16 34 H 0.38 8.00 8.44 -40.82 -0.34 7.66 16 35 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 LS Contribution 307.17 15.07 4.63 4.63 Total: -1.00 -34.29 307.17 -5.64 -39.93 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.86 Total: 4.84 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -0.75 Total: 4.88 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.23 Total: -47.53 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: 0.14 Total: -21.76 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.01 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.29 -5.64 -39.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597684192.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.690 kcal (2) G-P(sol) polarization free energy of solvation -34.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds