Wall clock time and date at job start Mon Mar 30 2020 04:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50692 * 120.00571 * 2 1 4 4 C 1.50709 * 119.99425 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.46776 * 95.00362 * 4 2 1 6 6 H 1.09002 * 110.53624 * 54.29659 * 5 4 2 7 7 N 1.47315 * 110.59866 * 291.46465 * 5 4 2 8 8 C 1.34863 * 106.44058 * 241.27230 * 7 5 4 9 9 O 1.21534 * 123.73076 * 180.02562 * 8 7 5 10 10 N 1.33791 * 112.49922 * 0.13672 * 8 7 5 11 11 C 1.46503 * 124.17702 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47725 * 269.96235 * 11 10 8 13 13 C 1.50698 * 109.47284 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00404 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99676 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99695 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00164 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47490 * 90.00332 * 17 15 13 19 19 H 1.48506 * 109.47152 * 210.00179 * 17 15 13 20 20 H 1.48498 * 109.47132 * 329.99685 * 17 15 13 21 21 C 1.34770 * 111.64937 * 359.91293 * 10 8 7 22 22 O 1.21226 * 127.16235 * 180.02562 * 21 10 8 23 23 H 1.08004 * 119.99517 * 0.02562 * 1 2 3 24 24 H 1.07997 * 120.00278 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47122 * 239.99808 * 3 2 1 26 26 H 1.08998 * 109.46863 * 359.97438 * 3 2 1 27 27 H 1.09001 * 109.47253 * 119.99817 * 3 2 1 28 28 H 1.08996 * 109.47402 * 334.99889 * 4 2 1 29 29 H 1.08997 * 109.46648 * 214.99679 * 4 2 1 30 30 H 0.97001 * 126.68921 * 61.27658 * 7 5 4 31 31 H 1.09000 * 109.46825 * 29.96607 * 11 10 8 32 32 H 1.09006 * 109.46794 * 149.95823 * 11 10 8 33 33 H 1.09000 * 109.47272 * 300.00098 * 12 11 10 34 34 H 1.09001 * 109.46890 * 59.99747 * 12 11 10 35 35 H 0.97000 * 120.00198 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3053 0.0006 5 6 2.4273 -1.6846 -1.4363 6 1 2.9676 -0.8716 -1.9213 7 7 1.2182 -2.0330 -2.2024 8 6 1.3675 -3.3166 -2.5884 9 8 0.5445 -3.9241 -3.2446 10 7 2.5210 -3.8471 -2.1666 11 6 2.9428 -5.2231 -2.4404 12 6 2.4450 -6.1413 -1.3224 13 6 2.8794 -7.5566 -1.6038 14 1 3.4528 -7.7791 -2.4915 15 6 2.5438 -8.5676 -0.7285 16 7 2.9225 -9.8029 -0.9743 17 14 1.5514 -8.1830 0.8066 18 1 0.1028 -8.3031 0.5026 19 1 1.9125 -9.1409 1.8824 20 1 1.8501 -6.7993 1.2553 21 6 3.2478 -2.9590 -1.4598 22 8 4.3322 -3.1412 -0.9496 23 1 -0.5399 0.9354 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 2.6903 1.3626 -0.8900 26 1 1.3553 2.1335 -0.0005 27 1 2.6902 1.3627 0.8900 28 1 1.4385 -2.0853 0.4352 29 1 2.9741 -1.1987 0.5899 30 1 0.4644 -1.4524 -2.3911 31 1 2.5233 -5.5491 -3.3921 32 1 4.0309 -5.2668 -2.4890 33 1 2.8645 -5.8153 -0.3706 34 1 1.3569 -6.0976 -1.2738 35 1 2.6868 -10.5142 -0.3584 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601067866.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:34 Heat of formation + Delta-G solvation = -60.961667 kcal Electronic energy + Delta-G solvation = -18660.361290 eV Core-core repulsion = 15658.437301 eV Total energy + Delta-G solvation = -3001.923989 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.46027 -39.69653 -38.15750 -37.01477 -36.07125 -34.76861 -32.27579 -30.69841 -28.11392 -27.59419 -25.73064 -23.74589 -23.09756 -21.33067 -19.60651 -19.18749 -18.84031 -17.91776 -17.52948 -16.60375 -16.46297 -16.30191 -15.72456 -15.52051 -15.15342 -15.08408 -14.90247 -14.78190 -14.16717 -13.75579 -13.55313 -13.02775 -12.78429 -12.60166 -12.53273 -12.17080 -12.13177 -11.93154 -11.83834 -11.56432 -11.18731 -10.85846 -10.83081 -10.53874 -9.91713 -8.36442 -6.41949 0.51860 1.17446 1.29660 1.30506 1.32914 1.41717 1.93757 2.17824 2.29115 2.90389 2.98068 3.66758 3.81701 3.98307 4.01578 4.19171 4.29213 4.37659 4.51525 4.60450 4.62636 4.85875 4.88662 4.99078 5.07116 5.13995 5.22020 5.26738 5.50250 5.74006 5.79892 5.96176 6.08410 6.14802 6.35199 6.63551 7.08336 7.22679 8.79671 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.026807 B = 0.005725 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.240284 B = 4889.815383 C = 5081.038418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.085 4.085 5 C 0.116 3.884 6 H 0.166 0.834 7 N -0.701 5.701 8 C 0.697 3.303 9 O -0.580 6.580 10 N -0.581 5.581 11 C 0.139 3.861 12 C -0.013 4.013 13 C -0.534 4.534 14 H 0.046 0.954 15 C 0.015 3.985 16 N -0.941 5.941 17 Si 0.944 3.056 18 H -0.267 1.267 19 H -0.275 1.275 20 H -0.256 1.256 21 C 0.516 3.484 22 O -0.494 6.494 23 H 0.116 0.884 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.104 0.896 30 H 0.451 0.549 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.018 0.982 34 H 0.013 0.987 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.678 26.188 2.560 26.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.127 4.127 3 C -0.176 4.176 4 C -0.123 4.123 5 C 0.008 3.992 6 H 0.183 0.817 7 N -0.367 5.367 8 C 0.398 3.602 9 O -0.456 6.456 10 N -0.325 5.325 11 C 0.018 3.982 12 C -0.052 4.052 13 C -0.572 4.572 14 H 0.064 0.936 15 C -0.183 4.183 16 N -0.581 5.581 17 Si 0.767 3.233 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.180 1.180 21 C 0.305 3.695 22 O -0.365 6.365 23 H 0.134 0.866 24 H 0.108 0.892 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.122 0.878 30 H 0.298 0.702 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.036 0.964 34 H 0.032 0.968 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.473 25.504 2.532 25.864 hybrid contribution -0.628 -0.650 0.391 0.985 sum -4.101 24.855 2.923 25.360 Atomic orbital electron populations 1.23971 0.95230 1.02579 1.00660 1.21581 0.95318 0.94771 1.01077 1.20926 1.00525 0.93108 1.03072 1.20859 1.02598 0.96518 0.92340 1.22141 0.85425 0.95528 0.96150 0.81652 1.45506 1.23391 1.11061 1.56736 1.16145 0.81278 0.83165 0.79652 1.90983 1.45544 1.65308 1.43805 1.46695 1.20158 1.15102 1.50583 1.21536 1.00563 0.76133 0.99998 1.19704 0.96120 0.94183 0.95151 1.21161 1.35263 0.91768 1.09024 0.93603 1.25853 0.96559 0.94564 1.01357 1.70025 1.47832 1.01161 1.39046 0.85756 0.79322 0.79035 0.79153 1.19251 1.20003 1.17965 1.21523 0.85215 0.86745 0.76053 1.90784 1.19659 1.81646 1.44396 0.86569 0.89227 0.90395 0.90951 0.91117 0.91446 0.87765 0.70162 0.89687 0.89077 0.96373 0.96846 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.16 13.58 67.78 0.92 -1.23 16 2 C -0.13 -1.46 5.16 -16.49 -0.09 -1.55 16 3 C -0.12 -0.92 10.12 71.23 0.72 -0.20 16 4 C -0.08 -1.35 5.14 29.85 0.15 -1.19 16 5 C 0.12 2.08 3.64 44.37 0.16 2.25 16 6 H 0.17 1.79 8.14 -2.39 -0.02 1.77 16 7 N -0.70 -14.23 6.07 -459.11 -2.79 -17.02 16 8 C 0.70 22.48 8.63 179.33 1.55 24.03 16 9 O -0.58 -23.57 17.48 -3.82 -0.07 -23.64 16 10 N -0.58 -20.12 2.60 -772.81 -2.01 -22.13 16 11 C 0.14 5.83 5.64 86.38 0.49 6.31 16 12 C -0.01 -0.67 4.36 29.85 0.13 -0.53 16 13 C -0.53 -31.62 9.66 25.60 0.25 -31.37 16 14 H 0.05 2.91 7.99 -2.91 -0.02 2.89 16 15 C 0.01 0.89 5.47 84.65 0.46 1.36 16 16 N -0.94 -59.56 13.96 21.45 0.30 -59.26 16 17 Si 0.94 45.85 27.47 68.60 1.88 47.74 16 18 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 19 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.26 -11.83 6.54 99.48 0.65 -11.18 16 21 C 0.52 15.23 7.65 87.94 0.67 15.90 16 22 O -0.49 -17.37 17.76 -2.86 -0.05 -17.42 16 23 H 0.12 0.99 7.83 -2.91 -0.02 0.96 16 24 H 0.09 1.23 7.99 -2.91 -0.02 1.21 16 25 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 26 H 0.07 0.45 7.78 -2.39 -0.02 0.43 16 27 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 28 H 0.07 1.32 7.99 -2.39 -0.02 1.30 16 29 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.45 6.68 8.68 -92.71 -0.80 5.88 16 31 H 0.08 3.65 7.86 -2.39 -0.02 3.63 16 32 H 0.09 3.76 8.00 -2.38 -0.02 3.74 16 33 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 34 H 0.01 0.68 7.57 -2.39 -0.02 0.66 16 35 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -75.10 304.92 2.92 -72.18 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 0.23 Total: 5.78 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 5.42 Total: 13.76 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -4.50 Total: -98.41 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -0.12 Total: -41.05 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.88 Total: 47.74 kcal Total: -75.10 2.92 -72.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601067866.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.221 kcal (2) G-P(sol) polarization free energy of solvation -75.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds