Wall clock time and date at job start Mon Mar 30 2020 03:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.08990 * 109.47170 * 54.99895 * 11 10 9 13 13 N 1.46901 * 109.47143 * 294.99574 * 11 10 9 14 14 C 1.50700 * 109.46738 * 175.00110 * 11 10 9 15 15 O 1.21283 * 120.00142 * 100.00354 * 14 11 10 16 16 N 1.34775 * 120.00303 * 279.99439 * 14 11 10 17 17 C 1.46496 * 120.00555 * 180.02562 * 16 14 11 18 18 C 1.50700 * 109.47288 * 179.97438 * 17 16 14 19 19 C 1.41389 * 126.57191 * 90.00475 * 18 17 16 20 20 C 1.34513 * 106.83733 * 179.97438 * 19 18 17 21 21 O 1.34303 * 108.42028 * 359.97438 * 20 19 18 22 22 C 1.34297 * 109.47857 * 359.77121 * 21 20 19 23 23 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 25 25 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 26 26 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 27 27 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 28 28 H 1.00902 * 111.00138 * 300.00948 * 13 11 10 29 29 H 1.00908 * 110.99704 * 63.95534 * 13 11 10 30 30 H 0.97005 * 119.99246 * 0.02562 * 16 14 11 31 31 H 1.08992 * 109.47266 * 300.00471 * 17 16 14 32 32 H 1.09001 * 109.46731 * 60.00326 * 17 16 14 33 33 H 1.07999 * 126.58310 * 359.97438 * 19 18 17 34 34 H 1.08002 * 125.79011 * 179.97438 * 20 19 18 35 35 H 1.08006 * 125.79091 * 180.24406 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5517 -2.6364 0.0035 12 1 5.9142 -2.0465 0.8452 13 7 6.0423 -2.0518 -1.2517 14 6 6.0539 -4.0517 0.1285 15 8 6.4288 -4.6514 -0.8568 16 7 6.0866 -4.6512 1.3351 17 6 6.5753 -6.0268 1.4567 18 6 6.5095 -6.4577 2.8994 19 6 5.4187 -7.0876 3.5416 20 6 5.7853 -7.2944 4.8191 21 8 7.0334 -6.8264 4.9836 22 6 7.4795 -6.3227 3.8214 23 1 -0.4849 0.8400 -0.0004 24 1 3.8746 -0.6799 0.8911 25 1 3.8752 -0.6803 -0.8888 26 1 3.6587 -3.1509 -0.8875 27 1 3.6580 -3.1497 0.8925 28 1 5.7193 -2.5811 -2.0477 29 1 5.7729 -1.0824 -1.3287 30 1 5.7864 -4.1716 2.1231 31 1 5.9551 -6.6876 0.8512 32 1 7.6072 -6.0778 1.1094 33 1 4.4727 -7.3519 3.0926 34 1 5.1789 -7.7582 5.5831 35 1 8.4514 -5.8815 3.6558 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691643878.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:56 Heat of formation + Delta-G solvation = -33.464988 kcal Electronic energy + Delta-G solvation = -17832.166067 eV Core-core repulsion = 14831.434423 eV Total energy + Delta-G solvation = -3000.731644 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.83149 -39.61899 -35.91722 -35.20710 -32.87171 -32.77214 -30.31970 -30.08259 -27.57848 -25.87374 -23.42782 -21.85840 -20.72877 -20.55644 -19.85535 -17.99157 -17.22508 -16.65431 -16.29796 -15.77476 -15.07654 -15.00983 -14.57375 -14.27116 -14.05961 -13.72634 -13.18885 -13.03886 -12.82674 -12.67164 -12.42713 -12.08604 -11.82071 -11.34137 -10.98739 -10.41098 -10.16083 -10.08417 -9.87110 -9.41112 -9.31829 -9.02192 -8.85086 -8.62406 -8.31331 -6.12046 -4.11586 1.45895 2.20367 2.86293 2.88336 3.24878 3.33093 3.34421 3.47019 4.37390 4.49139 4.56024 4.77551 5.00358 5.06154 5.21044 5.29329 5.41509 5.46864 5.57883 5.61924 5.79525 5.90688 6.14233 6.18499 6.33181 6.46856 6.65953 6.82056 7.08804 7.21885 7.33654 7.64466 7.66982 7.78148 8.41117 8.44604 8.91962 9.49255 11.01220 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.023712 B = 0.004384 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.539767 B = 6385.751545 C = 7052.763965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.129 4.129 11 C 0.072 3.928 12 H 0.096 0.904 13 N -0.831 5.831 14 C 0.526 3.474 15 O -0.538 6.538 16 N -0.730 5.730 17 C 0.192 3.808 18 C -0.200 4.200 19 C -0.198 4.198 20 C -0.043 4.043 21 O -0.177 6.177 22 C -0.019 4.019 23 H 0.264 0.736 24 H 0.018 0.982 25 H 0.012 0.988 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.348 0.652 29 H 0.350 0.650 30 H 0.403 0.597 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.151 0.849 34 H 0.204 0.796 35 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.980 -11.594 8.681 20.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.562 4.562 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.169 4.169 11 C -0.043 4.043 12 H 0.114 0.886 13 N -0.363 5.363 14 C 0.312 3.688 15 O -0.414 6.414 16 N -0.384 5.384 17 C 0.069 3.931 18 C -0.202 4.202 19 C -0.217 4.217 20 C -0.110 4.110 21 O -0.072 6.072 22 C -0.088 4.088 23 H 0.074 0.926 24 H 0.036 0.964 25 H 0.030 0.970 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.162 0.838 29 H 0.165 0.835 30 H 0.237 0.763 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.169 0.831 34 H 0.220 0.780 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 14.994 -12.089 8.495 21.050 hybrid contribution -1.126 1.231 0.067 1.670 sum 13.868 -10.858 8.562 19.583 Atomic orbital electron populations 1.69912 1.06346 1.27011 1.50698 1.25042 0.94752 0.99224 0.94408 0.86767 0.80311 0.83533 0.78591 1.20194 1.21327 1.18980 1.21070 0.89245 0.94532 1.51327 0.91085 1.19574 0.97546 0.91384 0.96299 1.22198 0.91272 1.01083 1.02360 1.21504 0.95649 0.91670 0.95484 0.88568 1.58739 1.66719 1.07406 1.03403 1.20805 0.76769 0.88742 0.82452 1.90644 1.47428 1.66196 1.37127 1.46081 1.67313 1.14822 1.10180 1.19436 1.00240 0.83199 0.90246 1.20497 0.95492 1.06974 0.97214 1.21829 1.00822 1.04661 0.94394 1.24065 0.84568 1.03612 0.98791 1.84091 1.28595 1.59930 1.34575 1.23999 1.00429 1.01657 0.82690 0.92630 0.96361 0.97025 0.92058 0.91894 0.83840 0.83519 0.76305 0.90688 0.90863 0.83133 0.77979 0.77931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 7 C -0.52 -14.54 9.66 -34.44 -0.33 -14.87 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.24 3.81 -27.89 -0.11 -0.34 16 10 C -0.13 -2.44 4.78 -26.73 -0.13 -2.56 16 11 C 0.07 1.16 3.21 -68.86 -0.22 0.94 16 12 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 13 N -0.83 -13.42 8.94 -5.66 -0.05 -13.47 16 14 C 0.53 8.40 7.08 -10.99 -0.08 8.32 16 15 O -0.54 -10.25 16.25 5.55 0.09 -10.15 16 16 N -0.73 -9.24 5.55 -61.48 -0.34 -9.58 16 17 C 0.19 2.17 6.19 -5.20 -0.03 2.14 16 18 C -0.20 -1.97 5.53 -104.74 -0.58 -2.55 16 19 C -0.20 -1.87 10.87 -39.70 -0.43 -2.30 16 20 C -0.04 -0.35 12.09 29.42 0.36 0.00 16 21 O -0.18 -1.65 10.65 5.73 0.06 -1.59 16 22 C -0.02 -0.16 12.01 29.41 0.35 0.19 16 23 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 25 H 0.01 0.25 6.30 -51.93 -0.33 -0.07 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.35 5.75 8.58 -39.29 -0.34 5.41 16 29 H 0.35 5.44 7.55 -39.29 -0.30 5.15 16 30 H 0.40 4.49 8.46 -40.82 -0.35 4.15 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.20 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.20 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 303.53 15.07 4.57 4.57 Total: -1.00 -33.22 303.53 -5.51 -38.73 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -4.65 Total: 10.92 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -1.30 Total: -9.22 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.38 Total: -49.67 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.15 Total: -11.74 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.22 -5.51 -38.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691643878.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.262 kcal (2) G-P(sol) polarization free energy of solvation -33.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds