Wall clock time and date at job start Mon Mar 30 2020 03:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.08990 * 109.47170 * 54.99895 * 11 10 9 13 13 N 1.46901 * 109.47143 * 294.99574 * 11 10 9 14 14 C 1.50700 * 109.46738 * 175.00110 * 11 10 9 15 15 O 1.21283 * 120.00142 * 100.00354 * 14 11 10 16 16 N 1.34775 * 120.00303 * 279.99439 * 14 11 10 17 17 C 1.46496 * 120.00555 * 180.02562 * 16 14 11 18 18 C 1.50700 * 109.47288 * 179.97438 * 17 16 14 19 19 C 1.41389 * 126.57191 * 90.00475 * 18 17 16 20 20 C 1.34513 * 106.83733 * 179.97438 * 19 18 17 21 21 O 1.34303 * 108.42028 * 359.97438 * 20 19 18 22 22 C 1.34297 * 109.47857 * 359.77121 * 21 20 19 23 23 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 25 25 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 26 26 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 27 27 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 28 28 H 1.00902 * 111.00138 * 300.00948 * 13 11 10 29 29 H 1.00908 * 110.99704 * 63.95534 * 13 11 10 30 30 H 0.97005 * 119.99246 * 0.02562 * 16 14 11 31 31 H 1.08992 * 109.47266 * 300.00471 * 17 16 14 32 32 H 1.09001 * 109.46731 * 60.00326 * 17 16 14 33 33 H 1.07999 * 126.58310 * 359.97438 * 19 18 17 34 34 H 1.08002 * 125.79011 * 179.97438 * 20 19 18 35 35 H 1.08006 * 125.79091 * 180.24406 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5517 -2.6364 0.0035 12 1 5.9142 -2.0465 0.8452 13 7 6.0423 -2.0518 -1.2517 14 6 6.0539 -4.0517 0.1285 15 8 6.4288 -4.6514 -0.8568 16 7 6.0866 -4.6512 1.3351 17 6 6.5753 -6.0268 1.4567 18 6 6.5095 -6.4577 2.8994 19 6 5.4187 -7.0876 3.5416 20 6 5.7853 -7.2944 4.8191 21 8 7.0334 -6.8264 4.9836 22 6 7.4795 -6.3227 3.8214 23 1 -0.4849 0.8400 -0.0004 24 1 3.8746 -0.6799 0.8911 25 1 3.8752 -0.6803 -0.8888 26 1 3.6587 -3.1509 -0.8875 27 1 3.6580 -3.1497 0.8925 28 1 5.7193 -2.5811 -2.0477 29 1 5.7729 -1.0824 -1.3287 30 1 5.7864 -4.1716 2.1231 31 1 5.9551 -6.6876 0.8512 32 1 7.6072 -6.0778 1.1094 33 1 4.4727 -7.3519 3.0926 34 1 5.1789 -7.7582 5.5831 35 1 8.4514 -5.8815 3.6558 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691643878.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:55 Heat of formation + Delta-G solvation = -59.467214 kcal Electronic energy + Delta-G solvation = -17833.293608 eV Core-core repulsion = 14831.434423 eV Total energy + Delta-G solvation = -3001.859185 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.51096 -40.87832 -37.27256 -36.37210 -34.80863 -33.70908 -32.07728 -30.82474 -28.83231 -27.22830 -24.97458 -22.52378 -22.21564 -21.52592 -21.08487 -19.20300 -18.63578 -18.12088 -17.17817 -16.70753 -16.29831 -16.24753 -16.00487 -15.58233 -15.34973 -15.02583 -14.61669 -14.48294 -14.12162 -13.70874 -13.58364 -13.25364 -13.07308 -12.82765 -12.65118 -12.08703 -11.91396 -11.66556 -11.41093 -11.08535 -10.77374 -10.61044 -10.12942 -9.66658 -9.50926 -8.29968 -6.35663 0.79300 1.38882 1.40234 1.45643 1.51731 1.61064 2.25170 2.36440 2.42034 3.05767 3.71813 3.73592 3.84583 3.89768 4.10189 4.12835 4.19845 4.54758 4.58487 4.65291 4.72240 4.75832 4.94837 5.09216 5.25397 5.35428 5.38998 5.46999 5.49999 5.62610 6.06765 6.15226 6.25035 6.49583 6.53687 6.72925 7.22186 7.29302 8.86925 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.023712 B = 0.004384 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.539767 B = 6385.751545 C = 7052.763965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.237 1.237 7 C -0.536 4.536 8 H 0.025 0.975 9 C -0.006 4.006 10 C -0.119 4.119 11 C 0.082 3.918 12 H 0.120 0.880 13 N -0.830 5.830 14 C 0.524 3.476 15 O -0.573 6.573 16 N -0.715 5.715 17 C 0.196 3.804 18 C -0.217 4.217 19 C -0.222 4.222 20 C -0.037 4.037 21 O -0.185 6.185 22 C -0.011 4.011 23 H 0.266 0.734 24 H 0.032 0.968 25 H 0.024 0.976 26 H 0.041 0.959 27 H 0.062 0.938 28 H 0.345 0.655 29 H 0.355 0.645 30 H 0.412 0.588 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.150 0.850 34 H 0.234 0.766 35 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.269 -10.741 9.952 21.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.160 1.160 7 C -0.574 4.574 8 H 0.044 0.956 9 C -0.043 4.043 10 C -0.159 4.159 11 C -0.034 4.034 12 H 0.138 0.862 13 N -0.362 5.362 14 C 0.311 3.689 15 O -0.452 6.452 16 N -0.368 5.368 17 C 0.073 3.927 18 C -0.219 4.219 19 C -0.241 4.241 20 C -0.104 4.104 21 O -0.080 6.080 22 C -0.080 4.080 23 H 0.075 0.925 24 H 0.050 0.950 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.158 0.842 29 H 0.170 0.830 30 H 0.248 0.752 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.168 0.832 34 H 0.251 0.749 35 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 17.300 -11.256 9.802 22.849 hybrid contribution -1.911 0.843 -0.297 2.110 sum 15.388 -10.413 9.505 20.871 Atomic orbital electron populations 1.70082 1.08570 1.28253 1.52493 1.26085 0.95615 1.03794 0.93919 0.85600 0.79748 0.77681 0.79256 1.19240 1.21395 1.15961 1.21447 0.92246 0.92900 1.50771 0.95632 1.19502 0.93780 0.93809 0.97253 1.22020 0.93602 0.98731 1.01498 1.21431 0.93187 0.92384 0.96369 0.86242 1.58759 1.66446 1.07662 1.03297 1.20778 0.76634 0.88626 0.82855 1.90633 1.49281 1.66830 1.38409 1.46017 1.65977 1.15292 1.09513 1.19409 1.00036 0.82012 0.91289 1.20410 0.96488 1.08375 0.96619 1.21999 1.01094 1.05747 0.95284 1.24645 0.84207 1.02486 0.99025 1.84118 1.29059 1.59962 1.34812 1.24476 1.00976 1.00500 0.82028 0.92512 0.94981 0.95747 0.94007 0.91899 0.84192 0.82997 0.75218 0.92030 0.90391 0.83192 0.74948 0.75326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.33 13.96 21.45 0.30 -59.03 16 2 C 0.00 0.14 5.47 84.65 0.46 0.61 16 3 Si 0.95 42.44 27.47 68.60 1.88 44.32 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.24 -9.37 6.54 99.48 0.65 -8.72 16 7 C -0.54 -30.11 9.66 25.60 0.25 -29.86 16 8 H 0.03 1.61 7.99 -2.91 -0.02 1.58 16 9 C -0.01 -0.26 3.81 29.85 0.11 -0.14 16 10 C -0.12 -4.36 4.78 30.59 0.15 -4.22 16 11 C 0.08 2.45 3.21 44.17 0.14 2.59 16 12 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 13 N -0.83 -25.15 8.94 -171.81 -1.54 -26.68 16 14 C 0.52 16.09 7.08 87.66 0.62 16.71 16 15 O -0.57 -21.47 16.25 -3.04 -0.05 -21.52 16 16 N -0.72 -17.06 5.55 -466.80 -2.59 -19.65 16 17 C 0.20 4.25 6.19 85.63 0.53 4.78 16 18 C -0.22 -3.99 5.53 -19.94 -0.11 -4.10 16 19 C -0.22 -3.96 10.87 22.19 0.24 -3.72 16 20 C -0.04 -0.53 12.09 66.97 0.81 0.28 16 21 O -0.18 -3.02 10.65 -2.43 -0.03 -3.04 16 22 C -0.01 -0.17 12.01 66.97 0.80 0.64 16 23 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 24 H 0.03 1.31 7.20 -2.39 -0.02 1.29 16 25 H 0.02 1.00 6.30 -2.39 -0.02 0.98 16 26 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.34 11.01 8.58 -89.69 -0.77 10.24 16 29 H 0.35 10.06 7.55 -89.69 -0.68 9.38 16 30 H 0.41 8.37 8.46 -92.70 -0.78 7.58 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 34 H 0.23 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.23 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -72.56 303.53 0.83 -71.73 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: -1.16 Total: 30.32 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 4.01 Total: -16.43 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -3.83 Total: -105.37 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.08 Total: -24.57 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.88 Total: 44.32 kcal Total: -72.56 0.83 -71.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691643878.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.259 kcal (2) G-P(sol) polarization free energy of solvation -72.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds