Wall clock time and date at job start Mon Mar 30 2020 03:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99388 * 2 1 4 4 H 1.48504 * 109.46869 * 269.99758 * 3 2 1 5 5 H 1.48498 * 109.47478 * 30.00224 * 3 2 1 6 6 H 1.48499 * 109.46826 * 150.00158 * 3 2 1 7 7 C 1.37868 * 120.00430 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00285 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00451 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47581 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46983 * 180.02562 * 10 9 7 12 12 H 1.08992 * 109.46877 * 304.99957 * 11 10 9 13 13 N 1.46903 * 109.46991 * 65.00075 * 11 10 9 14 14 C 1.50702 * 109.46685 * 185.00117 * 11 10 9 15 15 O 1.21284 * 120.00005 * 259.99850 * 14 11 10 16 16 N 1.34775 * 120.00075 * 80.00225 * 14 11 10 17 17 C 1.46503 * 119.99928 * 179.97438 * 16 14 11 18 18 C 1.50701 * 109.46916 * 179.97438 * 17 16 14 19 19 C 1.41381 * 126.57424 * 90.00122 * 18 17 16 20 20 C 1.34520 * 106.83580 * 179.72986 * 19 18 17 21 21 O 1.34302 * 108.42210 * 0.26485 * 20 19 18 22 22 C 1.34302 * 109.47622 * 359.97438 * 21 20 19 23 23 H 0.96994 * 120.00735 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.46984 * 60.00012 * 9 7 2 25 25 H 1.09007 * 109.47111 * 300.00821 * 9 7 2 26 26 H 1.09000 * 109.47116 * 60.00363 * 10 9 7 27 27 H 1.08998 * 109.47035 * 300.00057 * 10 9 7 28 28 H 1.00899 * 111.00292 * 60.00006 * 13 11 10 29 29 H 1.00899 * 110.99283 * 183.94955 * 13 11 10 30 30 H 0.96992 * 120.00059 * 359.97438 * 16 14 11 31 31 H 1.09007 * 109.47170 * 59.99754 * 17 16 14 32 32 H 1.08999 * 109.46799 * 299.99624 * 17 16 14 33 33 H 1.08002 * 126.58570 * 359.97438 * 19 18 17 34 34 H 1.08004 * 125.78733 * 180.22473 * 20 19 18 35 35 H 1.07999 * 125.79201 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5465 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 0.0001 11 6 5.5517 -2.6362 0.0001 12 1 5.9149 -2.0469 -0.8417 13 7 6.0412 -2.0508 1.2554 14 6 6.0541 -4.0516 -0.1236 15 8 6.4282 -4.6507 0.8623 16 7 6.0877 -4.6517 -1.3299 17 6 6.5766 -6.0275 -1.4503 18 6 6.5108 -6.4596 -2.8925 19 6 7.5280 -6.3123 -3.8633 20 6 7.0533 -6.8363 -5.0077 21 8 5.8075 -7.2854 -4.7841 22 6 5.4721 -7.0567 -3.5039 23 1 -0.4851 0.8399 -0.0004 24 1 3.8752 -0.6795 0.8895 25 1 3.8746 -0.6805 -0.8905 26 1 3.6581 -3.1504 -0.8897 27 1 3.6587 -3.1500 0.8903 28 1 5.7178 -2.5796 2.0514 29 1 7.0477 -1.9802 1.2530 30 1 5.7882 -4.1728 -2.1184 31 1 5.9559 -6.6880 -0.8447 32 1 7.6083 -6.0782 -1.1021 33 1 8.5011 -5.8681 -3.7138 34 1 7.5838 -6.8868 -5.9471 35 1 4.5296 -7.3123 -3.0426 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691643881.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:58 Heat of formation + Delta-G solvation = -33.495761 kcal Electronic energy + Delta-G solvation = -17824.704452 eV Core-core repulsion = 14823.971474 eV Total energy + Delta-G solvation = -3000.732978 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.87046 -39.77758 -35.81064 -35.14393 -32.91881 -32.74095 -30.48713 -30.11344 -27.50702 -25.89836 -23.22741 -21.90809 -20.78096 -20.48560 -19.85539 -18.02660 -17.00972 -16.66924 -16.32509 -15.93743 -15.51595 -15.05782 -14.84366 -14.16903 -14.04156 -13.52018 -13.39640 -13.10594 -12.59992 -12.55080 -12.34371 -12.08798 -11.62963 -11.02954 -10.86718 -10.49250 -10.12839 -9.90513 -9.76728 -9.56679 -9.11709 -9.09821 -8.93554 -8.49055 -8.36437 -5.98618 -3.96246 1.43189 2.14660 2.71781 2.83673 3.36752 3.44583 3.46040 3.52833 4.43920 4.51781 4.52450 4.73577 4.80153 5.04058 5.21134 5.34545 5.36135 5.41847 5.51566 5.69428 5.74973 5.85442 6.12872 6.29906 6.38454 6.48732 6.78517 6.88472 7.26376 7.37360 7.53267 7.61143 7.67900 7.87611 8.25678 8.58865 9.06001 9.64490 11.14891 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.023556 B = 0.004389 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.348516 B = 6378.542499 C = 7050.572877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.066 3.934 3 Si 0.879 3.121 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.260 1.260 7 C -0.521 4.521 8 H 0.069 0.931 9 C -0.005 4.005 10 C -0.087 4.087 11 C 0.075 3.925 12 H 0.098 0.902 13 N -0.811 5.811 14 C 0.483 3.517 15 O -0.554 6.554 16 N -0.726 5.726 17 C 0.189 3.811 18 C -0.204 4.204 19 C -0.200 4.200 20 C -0.043 4.043 21 O -0.175 6.175 22 C -0.012 4.012 23 H 0.262 0.738 24 H 0.034 0.966 25 H 0.008 0.992 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.350 0.650 29 H 0.335 0.665 30 H 0.404 0.596 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.149 0.851 34 H 0.203 0.797 35 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.090 -12.570 -8.716 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.184 1.184 7 C -0.559 4.559 8 H 0.087 0.913 9 C -0.042 4.042 10 C -0.125 4.125 11 C -0.041 4.041 12 H 0.115 0.885 13 N -0.339 5.339 14 C 0.269 3.731 15 O -0.432 6.432 16 N -0.379 5.379 17 C 0.066 3.934 18 C -0.206 4.206 19 C -0.220 4.220 20 C -0.111 4.111 21 O -0.070 6.070 22 C -0.081 4.081 23 H 0.072 0.928 24 H 0.052 0.948 25 H 0.026 0.974 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.164 0.836 29 H 0.147 0.853 30 H 0.239 0.761 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.166 0.834 34 H 0.220 0.780 35 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 15.609 -12.366 -8.398 21.612 hybrid contribution 0.871 0.197 -0.264 0.931 sum 16.479 -12.169 -8.662 22.241 Atomic orbital electron populations 1.69919 1.06371 1.26827 1.51503 1.25009 0.94689 0.99216 0.94573 0.86774 0.80730 0.83456 0.78394 1.20522 1.21606 1.18395 1.21181 0.89763 0.94330 1.50644 0.91327 1.19492 0.96336 0.91212 0.97169 1.21467 0.88013 1.01545 1.01522 1.21857 0.99357 0.87791 0.95050 0.88453 1.59036 1.15344 1.56072 1.03432 1.22653 0.76945 0.90980 0.82524 1.90655 1.48715 1.66685 1.37099 1.46262 1.66464 1.14790 1.10404 1.19467 1.00334 0.83412 0.90196 1.20476 0.95542 1.07278 0.97270 1.21767 1.01354 1.06006 0.92850 1.24054 0.84039 1.02205 1.00762 1.84109 1.30211 1.63968 1.28699 1.24083 1.00472 1.02071 0.81518 0.92846 0.94761 0.97369 0.92221 0.92196 0.83606 0.85345 0.76131 0.90819 0.90873 0.83355 0.78040 0.77738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.24 13.96 55.43 0.77 -27.46 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -14.88 9.66 -34.44 -0.33 -15.22 16 8 H 0.07 2.10 7.99 -52.49 -0.42 1.69 16 9 C 0.00 -0.11 3.93 -27.88 -0.11 -0.22 16 10 C -0.09 -1.68 4.78 -26.73 -0.13 -1.81 16 11 C 0.08 1.18 3.15 -68.86 -0.22 0.97 16 12 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 13 N -0.81 -12.77 8.44 -5.65 -0.05 -12.81 16 14 C 0.48 7.28 7.07 -10.99 -0.08 7.20 16 15 O -0.55 -9.87 16.25 5.55 0.09 -9.78 16 16 N -0.73 -8.80 5.55 -61.47 -0.34 -9.14 16 17 C 0.19 2.08 6.19 -5.19 -0.03 2.04 16 18 C -0.20 -1.96 5.53 -104.74 -0.58 -2.54 16 19 C -0.20 -1.72 10.87 -39.70 -0.43 -2.16 16 20 C -0.04 -0.33 12.09 29.42 0.36 0.02 16 21 O -0.18 -1.66 10.65 5.71 0.06 -1.59 16 22 C -0.01 -0.11 12.01 29.42 0.35 0.24 16 23 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 24 H 0.03 0.84 6.81 -51.93 -0.35 0.49 16 25 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.35 5.64 8.58 -39.29 -0.34 5.30 16 29 H 0.33 4.53 9.06 -39.29 -0.36 4.17 16 30 H 0.40 4.35 8.46 -40.82 -0.35 4.01 16 31 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 34 H 0.20 0.82 8.06 -52.48 -0.42 0.40 16 35 H 0.21 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 305.48 15.07 4.60 4.60 Total: -1.00 -34.07 305.48 -5.58 -39.65 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -4.75 Total: 8.87 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -1.30 Total: -9.63 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: 0.38 Total: -49.42 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.15 Total: -11.38 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.07 -5.58 -39.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691643881.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.153 kcal (2) G-P(sol) polarization free energy of solvation -34.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds