Wall clock time and date at job start Mon Mar 30 2020 03:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99388 * 2 1 4 4 H 1.48504 * 109.46869 * 269.99758 * 3 2 1 5 5 H 1.48498 * 109.47478 * 30.00224 * 3 2 1 6 6 H 1.48499 * 109.46826 * 150.00158 * 3 2 1 7 7 C 1.37868 * 120.00430 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00285 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00451 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47581 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46983 * 180.02562 * 10 9 7 12 12 H 1.08992 * 109.46877 * 304.99957 * 11 10 9 13 13 N 1.46903 * 109.46991 * 65.00075 * 11 10 9 14 14 C 1.50702 * 109.46685 * 185.00117 * 11 10 9 15 15 O 1.21284 * 120.00005 * 259.99850 * 14 11 10 16 16 N 1.34775 * 120.00075 * 80.00225 * 14 11 10 17 17 C 1.46503 * 119.99928 * 179.97438 * 16 14 11 18 18 C 1.50701 * 109.46916 * 179.97438 * 17 16 14 19 19 C 1.41381 * 126.57424 * 90.00122 * 18 17 16 20 20 C 1.34520 * 106.83580 * 179.72986 * 19 18 17 21 21 O 1.34302 * 108.42210 * 0.26485 * 20 19 18 22 22 C 1.34302 * 109.47622 * 359.97438 * 21 20 19 23 23 H 0.96994 * 120.00735 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.46984 * 60.00012 * 9 7 2 25 25 H 1.09007 * 109.47111 * 300.00821 * 9 7 2 26 26 H 1.09000 * 109.47116 * 60.00363 * 10 9 7 27 27 H 1.08998 * 109.47035 * 300.00057 * 10 9 7 28 28 H 1.00899 * 111.00292 * 60.00006 * 13 11 10 29 29 H 1.00899 * 110.99283 * 183.94955 * 13 11 10 30 30 H 0.96992 * 120.00059 * 359.97438 * 16 14 11 31 31 H 1.09007 * 109.47170 * 59.99754 * 17 16 14 32 32 H 1.08999 * 109.46799 * 299.99624 * 17 16 14 33 33 H 1.08002 * 126.58570 * 359.97438 * 19 18 17 34 34 H 1.08004 * 125.78733 * 180.22473 * 20 19 18 35 35 H 1.07999 * 125.79201 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5465 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 0.0001 11 6 5.5517 -2.6362 0.0001 12 1 5.9149 -2.0469 -0.8417 13 7 6.0412 -2.0508 1.2554 14 6 6.0541 -4.0516 -0.1236 15 8 6.4282 -4.6507 0.8623 16 7 6.0877 -4.6517 -1.3299 17 6 6.5766 -6.0275 -1.4503 18 6 6.5108 -6.4596 -2.8925 19 6 7.5280 -6.3123 -3.8633 20 6 7.0533 -6.8363 -5.0077 21 8 5.8075 -7.2854 -4.7841 22 6 5.4721 -7.0567 -3.5039 23 1 -0.4851 0.8399 -0.0004 24 1 3.8752 -0.6795 0.8895 25 1 3.8746 -0.6805 -0.8905 26 1 3.6581 -3.1504 -0.8897 27 1 3.6587 -3.1500 0.8903 28 1 5.7178 -2.5796 2.0514 29 1 7.0477 -1.9802 1.2530 30 1 5.7882 -4.1728 -2.1184 31 1 5.9559 -6.6880 -0.8447 32 1 7.6083 -6.0782 -1.1021 33 1 8.5011 -5.8681 -3.7138 34 1 7.5838 -6.8868 -5.9471 35 1 4.5296 -7.3123 -3.0426 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691643881.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:57 Heat of formation + Delta-G solvation = -60.159965 kcal Electronic energy + Delta-G solvation = -17825.860699 eV Core-core repulsion = 14823.971474 eV Total energy + Delta-G solvation = -3001.889225 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.53155 -40.98387 -37.03059 -36.40311 -34.77445 -33.73502 -32.27504 -30.82202 -28.78495 -27.26812 -24.76473 -22.53028 -22.15048 -21.56761 -21.10511 -19.09324 -18.62120 -18.00107 -17.27937 -16.97732 -16.66022 -16.21213 -16.07226 -15.55614 -15.31344 -14.82788 -14.68730 -14.42704 -14.01859 -13.70901 -13.47967 -13.27491 -12.88021 -12.78671 -12.54058 -12.01123 -11.73734 -11.58984 -11.32674 -11.18049 -10.81257 -10.69558 -10.17193 -9.72584 -9.48058 -8.24025 -6.27302 0.76900 1.40775 1.44310 1.44990 1.51476 1.58498 2.23951 2.42746 2.44733 3.12706 3.57443 3.71067 3.86508 3.88271 4.08007 4.11925 4.28323 4.53330 4.61675 4.70021 4.72530 4.85628 5.06951 5.15541 5.22388 5.34312 5.49714 5.51328 5.66810 5.75031 6.07812 6.13949 6.33509 6.44736 6.54134 6.81443 7.12855 7.37434 8.92888 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.023556 B = 0.004389 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.348516 B = 6378.542499 C = 7050.572877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.003 3.997 3 Si 0.952 3.048 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.244 1.244 7 C -0.531 4.531 8 H 0.028 0.972 9 C 0.002 3.998 10 C -0.079 4.079 11 C 0.085 3.915 12 H 0.120 0.880 13 N -0.819 5.819 14 C 0.487 3.513 15 O -0.583 6.583 16 N -0.712 5.712 17 C 0.193 3.807 18 C -0.215 4.215 19 C -0.216 4.216 20 C -0.038 4.038 21 O -0.187 6.187 22 C -0.019 4.019 23 H 0.265 0.735 24 H 0.029 0.971 25 H 0.022 0.978 26 H 0.066 0.934 27 H 0.040 0.960 28 H 0.346 0.654 29 H 0.349 0.651 30 H 0.413 0.587 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.160 0.840 34 H 0.237 0.763 35 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.239 -11.982 -10.005 24.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.193 4.193 3 Si 0.775 3.225 4 H -0.189 1.189 5 H -0.215 1.215 6 H -0.168 1.168 7 C -0.570 4.570 8 H 0.047 0.953 9 C -0.036 4.036 10 C -0.118 4.118 11 C -0.031 4.031 12 H 0.138 0.862 13 N -0.348 5.348 14 C 0.272 3.728 15 O -0.464 6.464 16 N -0.364 5.364 17 C 0.070 3.930 18 C -0.217 4.217 19 C -0.235 4.235 20 C -0.105 4.105 21 O -0.082 6.082 22 C -0.088 4.088 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.159 0.841 29 H 0.162 0.838 30 H 0.249 0.751 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.178 0.822 34 H 0.253 0.747 35 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 17.780 -11.796 -9.724 23.449 hybrid contribution 0.156 -0.090 0.103 0.207 sum 17.936 -11.886 -9.622 23.571 Atomic orbital electron populations 1.70078 1.08406 1.28044 1.53156 1.26006 0.95545 1.03582 0.94205 0.85630 0.79603 0.78035 0.79223 1.18944 1.21545 1.16767 1.21571 0.92541 0.92877 1.49964 0.95340 1.19379 0.92854 0.94019 0.97312 1.21260 0.90808 0.98673 1.01017 1.21667 0.96627 0.88827 0.95971 0.86248 1.59026 1.16540 1.55982 1.03234 1.22417 0.76872 0.90599 0.82876 1.90649 1.50325 1.67154 1.38242 1.46185 1.65192 1.15225 1.09821 1.19437 0.99935 0.82431 0.91215 1.20422 0.96443 1.08150 0.96679 1.21987 1.01790 1.06752 0.92942 1.24744 0.83271 1.00656 1.01807 1.84124 1.31124 1.64204 1.28746 1.24414 1.01016 1.01829 0.81557 0.92667 0.95224 0.95986 0.91584 0.94078 0.84053 0.83783 0.75117 0.91431 0.91060 0.82220 0.74715 0.76339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.64 13.96 21.44 0.30 -60.34 16 2 C 0.00 0.16 5.47 84.65 0.46 0.62 16 3 Si 0.95 44.69 27.47 68.60 1.88 46.57 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.24 -10.79 6.54 99.48 0.65 -10.14 16 7 C -0.53 -30.73 9.66 25.60 0.25 -30.49 16 8 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 9 C 0.00 0.08 3.93 29.85 0.12 0.20 16 10 C -0.08 -2.98 4.78 30.59 0.15 -2.83 16 11 C 0.08 2.50 3.15 44.17 0.14 2.64 16 12 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 13 N -0.82 -24.31 8.44 -171.80 -1.45 -25.76 16 14 C 0.49 13.95 7.07 87.66 0.62 14.57 16 15 O -0.58 -20.29 16.25 -3.04 -0.05 -20.34 16 16 N -0.71 -16.09 5.55 -466.77 -2.59 -18.68 16 17 C 0.19 4.01 6.19 85.63 0.53 4.54 16 18 C -0.22 -3.83 5.53 -19.94 -0.11 -3.94 16 19 C -0.22 -3.27 10.87 22.19 0.24 -3.03 16 20 C -0.04 -0.50 12.09 66.97 0.81 0.31 16 21 O -0.19 -3.21 10.65 -2.47 -0.03 -3.23 16 22 C -0.02 -0.32 12.01 66.97 0.80 0.48 16 23 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 24 H 0.03 1.39 6.81 -2.38 -0.02 1.38 16 25 H 0.02 0.95 7.57 -2.38 -0.02 0.94 16 26 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.35 10.83 8.58 -89.69 -0.77 10.06 16 29 H 0.35 8.68 9.06 -89.70 -0.81 7.87 16 30 H 0.41 8.00 8.46 -92.71 -0.78 7.22 16 31 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.24 1.13 8.06 -2.91 -0.02 1.10 16 35 H 0.22 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -73.52 305.48 0.78 -72.74 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: -1.30 Total: 25.96 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 4.01 Total: -16.93 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -3.74 Total: -104.78 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.08 Total: -23.57 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Total: -73.52 0.78 -72.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691643881.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.584 kcal (2) G-P(sol) polarization free energy of solvation -73.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds