Wall clock time and date at job start Mon Mar 30 2020 03:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99861 * 2 1 4 4 H 1.48497 * 109.47118 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47233 * 300.00159 * 3 2 1 6 6 H 1.48506 * 109.46946 * 60.00210 * 3 2 1 7 7 C 1.37878 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00179 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99714 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46785 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99719 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99837 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99767 * 179.97438 * 11 10 9 14 14 N 1.46901 * 109.46943 * 180.02562 * 13 11 10 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 11 16 16 C 1.52993 * 109.47039 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47393 * 180.02562 * 16 15 14 18 18 C 1.41387 * 126.58425 * 89.99383 * 17 16 15 19 19 C 1.34503 * 106.84452 * 179.97438 * 18 17 16 20 20 O 1.34305 * 108.42215 * 0.02562 * 19 18 17 21 21 C 1.34309 * 109.47282 * 359.76538 * 20 19 18 22 22 H 0.97000 * 119.99968 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46739 * 59.99909 * 9 7 2 24 24 H 1.08995 * 109.47079 * 299.99751 * 9 7 2 25 25 H 0.96997 * 119.99567 * 0.02562 * 10 9 7 26 26 H 1.09004 * 109.46763 * 60.00720 * 13 11 10 27 27 H 1.08995 * 109.47483 * 300.00377 * 13 11 10 28 28 H 1.00901 * 111.00067 * 303.95401 * 14 13 11 29 29 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 30 30 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 31 31 H 1.09001 * 109.47393 * 299.99719 * 16 15 14 32 32 H 1.08998 * 109.47408 * 60.00073 * 16 15 14 33 33 H 1.08003 * 126.57489 * 0.02562 * 18 17 16 34 34 H 1.08005 * 125.79156 * 179.97438 * 19 18 17 35 35 H 1.07997 * 125.78356 * 180.23655 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 1.7538 -4.8833 0.0011 12 8 0.5614 -5.1049 0.0011 13 6 2.7331 -6.0287 0.0005 14 7 1.9986 -7.3009 0.0006 15 6 2.9231 -8.4426 0.0006 16 6 2.1231 -9.7467 0.0001 17 6 3.0714 -10.9178 0.0008 18 6 3.6010 -11.5726 1.1365 19 6 4.3975 -12.5570 0.6828 20 8 4.3790 -12.5329 -0.6599 21 6 3.5727 -11.5439 -1.0790 22 1 -0.4850 0.8400 0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6241 -2.5567 0.8903 25 1 3.1567 -3.4353 0.0009 26 1 3.3604 -5.9709 0.8901 27 1 3.3591 -5.9711 -0.8899 28 1 1.3625 -7.3511 0.7822 29 1 3.5511 -8.4016 -0.8894 30 1 3.5511 -8.4015 0.8906 31 1 1.4948 -9.7879 0.8899 32 1 1.4954 -9.7875 -0.8900 33 1 3.4031 -11.3296 2.1701 34 1 4.9576 -13.2488 1.2945 35 1 3.3640 -11.2927 -2.1084 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692750529.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:54 Heat of formation + Delta-G solvation = -56.879969 kcal Electronic energy + Delta-G solvation = -17090.973690 eV Core-core repulsion = 14089.226696 eV Total energy + Delta-G solvation = -3001.746994 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.40611 -40.50963 -37.48796 -36.09745 -34.75416 -34.32518 -31.67032 -30.14496 -29.07500 -26.74427 -24.41108 -23.30913 -22.44371 -21.46248 -21.00811 -19.01021 -18.27357 -17.62975 -17.20287 -16.97090 -16.79148 -16.19376 -15.88485 -15.57825 -15.13296 -14.84779 -14.49999 -14.14089 -13.86645 -13.65847 -13.55435 -13.06417 -12.98452 -12.81782 -12.78668 -12.70901 -12.21978 -11.85857 -11.45566 -10.81563 -10.77449 -10.52507 -9.82360 -9.44155 -9.36802 -8.29195 -6.45772 0.90905 1.43468 1.44644 1.58126 1.68568 1.79234 2.29315 2.35515 2.51798 3.05741 3.31039 3.92827 3.98026 4.07604 4.21731 4.23964 4.36139 4.44656 4.52828 4.68954 4.85392 4.88154 5.08854 5.13386 5.24721 5.27555 5.36903 5.49436 5.62934 5.68887 5.85203 5.95762 6.24777 6.31830 6.65960 6.94609 7.23854 7.52415 8.83309 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.069014 B = 0.002694 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.618602 B =10391.100521 C =10587.796344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.986 3.014 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.266 3.734 10 N -0.709 5.709 11 C 0.492 3.508 12 O -0.592 6.592 13 C 0.057 3.943 14 N -0.691 5.691 15 C 0.073 3.927 16 C -0.043 4.043 17 C -0.192 4.192 18 C -0.229 4.229 19 C -0.043 4.043 20 O -0.192 6.192 21 C -0.046 4.046 22 H 0.269 0.731 23 H -0.014 1.014 24 H -0.013 1.013 25 H 0.409 0.591 26 H 0.084 0.916 27 H 0.121 0.879 28 H 0.345 0.655 29 H 0.079 0.921 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.155 0.845 34 H 0.233 0.767 35 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.851 -22.201 1.212 25.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.103 0.897 9 C 0.143 3.857 10 N -0.360 5.360 11 C 0.279 3.721 12 O -0.473 6.473 13 C -0.075 4.075 14 N -0.324 5.324 15 C -0.055 4.055 16 C -0.081 4.081 17 C -0.194 4.194 18 C -0.248 4.248 19 C -0.110 4.110 20 O -0.088 6.088 21 C -0.113 4.113 22 H 0.077 0.923 23 H 0.004 0.996 24 H 0.005 0.995 25 H 0.244 0.756 26 H 0.102 0.898 27 H 0.139 0.861 28 H 0.164 0.836 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.173 0.827 34 H 0.249 0.751 35 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 11.938 -22.434 0.343 25.415 hybrid contribution 0.263 1.241 1.095 1.676 sum 12.201 -21.193 1.438 24.496 Atomic orbital electron populations 1.70150 1.08306 1.28500 1.50095 1.26094 0.95795 1.03997 0.93908 0.85093 0.79093 0.77255 0.77655 1.17569 1.20490 1.20472 1.21658 0.94336 0.90555 1.52676 0.89734 1.18529 0.88744 0.84426 0.94002 1.46183 1.11197 1.05529 1.73068 1.21451 0.89969 0.84968 0.75730 1.90640 1.19363 1.85410 1.51919 1.21750 0.94000 0.86976 1.04785 1.60127 1.19956 1.00692 1.51584 1.21934 0.93808 0.88443 1.01335 1.19821 0.95493 0.89401 1.03380 1.20547 1.04104 1.01236 0.93479 1.22042 1.02873 0.99461 1.00466 1.24667 1.03332 1.02413 0.80547 1.84081 1.54690 1.46452 1.23567 1.24371 0.95701 0.90377 1.00837 0.92261 0.99637 0.99504 0.75551 0.89841 0.86116 0.83595 0.90259 0.94461 0.91169 0.90395 0.82696 0.75085 0.76145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.99 42.33 29.54 68.60 2.03 44.36 16 4 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.55 -30.22 9.28 25.60 0.24 -29.98 16 8 H 0.08 4.15 7.60 -2.91 -0.02 4.12 16 9 C 0.27 14.72 5.43 85.63 0.46 15.19 16 10 N -0.71 -29.84 5.55 -466.79 -2.59 -32.43 16 11 C 0.49 19.61 7.87 87.66 0.69 20.30 16 12 O -0.59 -29.67 16.20 -3.03 -0.05 -29.72 16 13 C 0.06 1.50 6.17 85.56 0.53 2.02 16 14 N -0.69 -18.07 6.13 -517.93 -3.17 -21.25 16 15 C 0.07 1.41 5.67 86.30 0.49 1.90 16 16 C -0.04 -0.79 5.99 29.85 0.18 -0.61 16 17 C -0.19 -3.38 5.42 -19.94 -0.11 -3.49 16 18 C -0.23 -3.66 10.87 22.19 0.24 -3.42 16 19 C -0.04 -0.58 12.09 66.96 0.81 0.23 16 20 O -0.19 -3.26 10.65 -2.56 -0.03 -3.28 16 21 C -0.05 -0.73 12.01 66.97 0.80 0.07 16 22 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 23 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 24 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 25 H 0.41 13.95 8.32 -92.71 -0.77 13.18 16 26 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.12 2.64 8.14 -2.39 -0.02 2.63 16 28 H 0.35 9.62 8.43 -89.69 -0.76 8.87 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 30 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.23 1.24 8.06 -2.91 -0.02 1.21 16 35 H 0.22 2.30 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -74.56 310.88 0.84 -73.72 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -0.43 Total: 22.10 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 4.80 Total: 2.77 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -5.48 Total: -109.95 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -0.08 Total: -33.00 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -74.56 0.84 -73.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692750529.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.841 kcal (2) G-P(sol) polarization free energy of solvation -74.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds