Wall clock time and date at job start Mon Mar 30 2020 03:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.99110 * 2 1 4 4 O 1.43747 * 109.87290 * 238.91507 * 2 1 3 5 5 C 1.44380 * 106.97275 * 214.06167 * 4 2 1 6 6 C 1.54998 * 103.48966 * 40.06332 * 5 4 2 7 7 C 1.54096 * 109.87624 * 121.08929 * 2 1 3 8 8 H 1.09007 * 110.60015 * 240.17879 * 7 2 1 9 9 C 1.50696 * 110.49166 * 2.77325 * 7 2 1 10 10 N 1.29943 * 126.28814 * 56.24671 * 9 7 2 11 11 O 1.21298 * 110.25290 * 180.02562 * 10 9 7 12 12 C 1.33641 * 109.81189 * 359.97438 * 11 10 9 13 13 C 1.50703 * 126.55102 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47064 * 270.02360 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47294 * 60.00559 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 N 1.31122 * 106.89556 * 0.22695 * 12 11 10 23 23 H 1.09007 * 109.46834 * 298.91313 * 1 2 3 24 24 H 1.09002 * 109.47012 * 58.90943 * 1 2 3 25 25 H 1.08998 * 109.47380 * 178.91556 * 1 2 3 26 26 H 1.08999 * 109.46905 * 181.08133 * 3 2 1 27 27 H 1.08995 * 109.47694 * 301.08483 * 3 2 1 28 28 H 1.08998 * 109.47025 * 61.08875 * 3 2 1 29 29 H 1.09003 * 110.61855 * 281.56530 * 5 4 2 30 30 H 1.09002 * 110.61738 * 158.56695 * 5 4 2 31 31 H 1.08999 * 110.90666 * 204.77634 * 6 5 4 32 32 H 1.09001 * 110.93150 * 81.18606 * 6 5 4 33 33 H 1.09002 * 109.47152 * 150.02453 * 13 12 11 34 34 H 1.09001 * 109.46980 * 30.02553 * 13 12 11 35 35 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0531 1.4378 0.0000 4 8 2.0187 -0.6980 -1.1577 5 6 3.2378 -1.3642 -0.7648 6 6 2.9195 -1.8915 0.6575 7 6 2.0540 -0.7483 1.2410 8 1 2.6616 -0.0874 1.8593 9 6 0.9074 -1.3105 2.0411 10 7 -0.0149 -2.1144 1.6031 11 8 -0.7943 -2.3835 2.4927 12 6 -0.4321 -1.7584 3.6169 13 6 -1.1342 -1.8277 4.9486 14 6 -2.1682 -0.7342 5.0288 15 1 -2.3036 -0.0571 4.1984 16 6 -2.9419 -0.5989 6.1620 17 7 -2.7773 -1.4237 7.1729 18 14 -4.2240 0.7560 6.2611 19 1 -5.2149 0.5807 5.1689 20 1 -4.9158 0.6878 7.5733 21 1 -3.5603 2.0769 6.1200 22 7 0.6479 -1.0688 3.3385 23 1 -0.3633 0.4969 0.8996 24 1 -0.3633 0.5307 -0.8801 25 1 -0.3634 -1.0274 -0.0194 26 1 3.1429 1.4279 -0.0194 27 1 1.6788 1.9607 -0.8800 28 1 1.7104 1.9490 0.8996 29 1 4.0685 -0.6589 -0.7357 30 1 3.4584 -2.1908 -1.4403 31 1 3.8331 -2.0225 1.2373 32 1 2.3540 -2.8222 0.6103 33 1 -0.4067 -1.6992 5.7501 34 1 -1.6217 -2.7971 5.0523 35 1 -3.3215 -1.3283 7.9703 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693311477.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:14 Heat of formation + Delta-G solvation = 14.543824 kcal Electronic energy + Delta-G solvation = -18936.197149 eV Core-core repulsion = 15937.547323 eV Total energy + Delta-G solvation = -2998.649826 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.83791 -40.06086 -35.35571 -34.12662 -33.01719 -32.25372 -31.25037 -28.57067 -27.28446 -26.43157 -24.03925 -23.09937 -22.11488 -21.08945 -19.32340 -17.51472 -16.89778 -16.31506 -16.21594 -15.88073 -14.93110 -14.79947 -14.20156 -13.47718 -13.36589 -13.20215 -12.59613 -12.49492 -12.24732 -12.15787 -12.01127 -11.62259 -11.36642 -11.32168 -11.13494 -10.96733 -10.91856 -10.76244 -10.52511 -10.29854 -10.10950 -9.82975 -9.70190 -8.86245 -8.62899 -6.26627 -4.32530 1.92147 2.91309 3.24791 3.28743 3.32554 3.70910 3.75984 4.04202 4.30810 4.45019 4.54815 4.87548 4.90168 4.99752 5.08155 5.12686 5.17793 5.43017 5.52238 5.59335 5.67112 5.80605 5.86538 5.92339 5.95185 6.04345 6.13751 6.45587 6.58353 6.68930 6.89151 7.09997 7.17265 7.66335 7.90140 8.67366 8.93671 9.32430 10.83724 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.036061 B = 0.005312 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.276299 B = 5269.880602 C = 5647.855819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.111 3.889 3 C -0.161 4.161 4 O -0.363 6.363 5 C 0.049 3.951 6 C -0.146 4.146 7 C -0.020 4.020 8 H 0.110 0.890 9 C 0.168 3.832 10 N -0.397 5.397 11 O 0.059 5.941 12 C 0.237 3.763 13 C 0.101 3.899 14 C -0.524 4.524 15 H 0.060 0.940 16 C 0.067 3.933 17 N -0.888 5.888 18 Si 0.906 3.094 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.274 1.274 22 N -0.506 5.506 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.087 0.913 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.089 1.204 -11.503 15.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.071 3.929 3 C -0.218 4.218 4 O -0.283 6.283 5 C -0.028 4.028 6 C -0.185 4.185 7 C -0.040 4.040 8 H 0.129 0.871 9 C -0.105 4.105 10 N -0.111 5.111 11 O 0.005 5.995 12 C 0.019 3.981 13 C 0.062 3.938 14 C -0.563 4.563 15 H 0.079 0.921 16 C -0.136 4.136 17 N -0.525 5.525 18 Si 0.733 3.267 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.200 1.200 22 N -0.240 5.240 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.106 0.894 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.213 1.135 -12.226 15.971 hybrid contribution -0.663 0.722 0.549 1.123 sum 9.550 1.857 -11.678 15.199 Atomic orbital electron populations 1.22271 0.92545 1.04593 1.01899 1.22008 0.95546 0.91614 0.83745 1.22237 1.01289 0.95284 1.03022 1.88922 1.39301 1.67214 1.32830 1.23513 0.88001 0.96364 0.94940 1.23236 1.00123 0.98654 0.96478 1.20877 0.91445 0.96985 0.94676 0.87148 1.25111 0.98090 0.97341 0.89928 1.74487 1.04274 1.19561 1.12756 1.85272 1.42780 1.55067 1.16401 1.30115 0.89128 0.85835 0.92990 1.18200 0.95030 1.00303 0.80237 1.20748 1.18636 1.14463 1.02484 0.92129 1.24917 0.97200 0.96437 0.95076 1.69912 1.40130 1.36821 1.05668 0.86421 0.81058 0.81777 0.77487 1.19886 1.20905 1.19953 1.71950 1.15878 1.24448 1.11732 0.91730 0.92143 0.89401 0.92164 0.91561 0.91097 0.92000 0.88770 0.89560 0.89797 0.91382 0.92416 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 7.60 37.16 0.28 -2.22 16 2 C 0.11 1.58 1.19 -90.05 -0.11 1.47 16 3 C -0.16 -1.89 8.62 37.15 0.32 -1.57 16 4 O -0.36 -5.16 10.86 -35.23 -0.38 -5.55 16 5 C 0.05 0.53 7.66 38.21 0.29 0.82 16 6 C -0.15 -1.79 6.70 -24.72 -0.17 -1.96 16 7 C -0.02 -0.29 3.21 -90.25 -0.29 -0.58 16 8 H 0.11 1.51 7.70 -51.92 -0.40 1.11 16 9 C 0.17 3.17 5.28 -156.37 -0.83 2.34 16 10 N -0.40 -7.89 9.32 30.90 0.29 -7.61 16 11 O 0.06 1.26 11.31 18.11 0.20 1.47 16 12 C 0.24 5.29 7.70 -13.06 -0.10 5.19 16 13 C 0.10 2.45 5.60 -29.03 -0.16 2.29 16 14 C -0.52 -13.97 9.09 -34.44 -0.31 -14.28 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 16 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -24.50 13.29 55.43 0.74 -23.76 16 18 Si 0.91 20.61 29.54 -169.99 -5.02 15.59 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 N -0.51 -10.90 11.55 -9.87 -0.11 -11.01 16 23 H 0.06 1.12 7.60 -51.92 -0.39 0.72 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.09 1.57 5.68 -51.93 -0.29 1.28 16 26 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.16 7.75 -51.93 -0.40 0.75 16 33 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 34 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 293.29 15.07 4.42 4.42 Total: -1.00 -28.49 293.29 -5.87 -34.35 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -4.83 Total: -1.11 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -1.17 Total: -6.80 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.91 Total: -42.38 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: -0.18 Total: -4.08 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.49 -5.87 -34.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693311477.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.899 kcal (2) G-P(sol) polarization free energy of solvation -28.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds