Wall clock time and date at job start Mon Mar 30 2020 03:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.86931 * 2 1 4 4 O 1.43746 * 109.87645 * 238.83862 * 2 1 3 5 5 C 1.44478 * 106.98554 * 267.08927 * 4 2 1 6 6 C 1.54998 * 103.44508 * 319.94809 * 5 4 2 7 7 C 1.54100 * 109.87705 * 121.00612 * 2 1 3 8 8 H 1.09001 * 110.60392 * 358.66912 * 7 2 1 9 9 C 1.50697 * 110.48995 * 236.06945 * 7 2 1 10 10 N 1.29946 * 126.28443 * 303.80794 * 9 7 2 11 11 O 1.21303 * 110.24960 * 179.97438 * 10 9 7 12 12 C 1.33642 * 109.81073 * 359.97438 * 11 10 9 13 13 C 1.50704 * 126.55123 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.46645 * 270.02346 * 13 12 11 15 15 H 1.07997 * 120.00175 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99571 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99947 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99643 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47282 * 60.00218 * 18 16 14 20 20 H 1.48496 * 109.46810 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47038 * 299.99780 * 18 16 14 22 22 N 1.31129 * 106.89861 * 359.76617 * 12 11 10 23 23 H 1.09002 * 109.46966 * 298.99127 * 1 2 3 24 24 H 1.08999 * 109.47103 * 58.99360 * 1 2 3 25 25 H 1.08999 * 109.46741 * 178.99403 * 1 2 3 26 26 H 1.08999 * 109.47436 * 181.00465 * 3 2 1 27 27 H 1.09005 * 109.47578 * 301.00341 * 3 2 1 28 28 H 1.09000 * 109.47518 * 61.00643 * 3 2 1 29 29 H 1.08997 * 110.65764 * 201.45460 * 5 4 2 30 30 H 1.08997 * 110.61802 * 78.42806 * 5 4 2 31 31 H 1.09002 * 110.90913 * 278.80261 * 6 5 4 32 32 H 1.08997 * 110.90321 * 155.23378 * 6 5 4 33 33 H 1.08993 * 109.46909 * 30.02313 * 13 12 11 34 34 H 1.08995 * 109.46885 * 150.02221 * 13 12 11 35 35 H 0.97004 * 120.00004 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0500 1.4388 0.0000 4 8 2.0188 -0.6995 -1.1568 5 6 2.2283 -2.0734 -0.7619 6 6 2.8325 -1.9516 0.6602 7 6 2.0540 -0.7465 1.2421 8 1 1.2252 -1.0907 1.8608 9 6 2.9744 0.1398 2.0410 10 7 4.0446 0.7317 1.6020 11 8 4.5643 1.3732 2.4908 12 6 3.8529 1.2480 3.6152 13 6 4.1582 1.8857 4.9461 14 6 5.0364 0.9655 5.7542 15 1 5.3432 0.0144 5.3448 16 6 5.4484 1.3380 7.0162 17 7 5.0753 2.4965 7.5144 18 14 6.5364 0.1971 8.0182 19 1 7.8042 -0.0484 7.2849 20 1 6.8363 0.8250 9.3300 21 1 5.8330 -1.0924 8.2364 22 7 2.8353 0.4688 3.3377 23 1 -0.3633 0.4981 0.8989 24 1 -0.3633 0.5294 -0.8808 25 1 -0.3633 -1.0275 -0.0180 26 1 3.1399 1.4314 -0.0180 27 1 1.6757 1.9606 -0.8809 28 1 1.7051 1.9499 0.8988 29 1 2.9298 -2.5646 -1.4362 30 1 1.2816 -2.6127 -0.7319 31 1 3.9004 -1.7383 0.6122 32 1 2.6437 -2.8540 1.2416 33 1 4.6742 2.8322 4.7855 34 1 3.2279 2.0658 5.4846 35 1 5.3647 2.7584 8.4025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693311483.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:15 Heat of formation + Delta-G solvation = 14.527043 kcal Electronic energy + Delta-G solvation = -18875.725468 eV Core-core repulsion = 15877.074915 eV Total energy + Delta-G solvation = -2998.650553 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.83748 -40.06359 -35.35654 -34.13215 -33.03058 -32.26313 -31.24952 -28.57367 -27.31647 -26.45240 -24.03613 -23.09616 -22.12332 -21.09225 -19.33165 -17.50796 -16.88657 -16.41625 -16.15848 -15.88002 -14.94325 -14.80204 -14.20618 -13.46418 -13.39986 -13.22117 -12.62961 -12.48175 -12.26321 -12.19452 -12.01997 -11.67595 -11.37096 -11.29118 -11.14831 -10.99262 -10.92579 -10.77362 -10.53186 -10.30779 -10.08085 -9.84779 -9.71369 -8.86787 -8.63160 -6.26864 -4.32788 1.92073 2.91246 3.24428 3.28417 3.32136 3.69791 3.75639 4.03109 4.30764 4.44973 4.54356 4.87553 4.88453 5.00129 5.07189 5.11587 5.16709 5.42052 5.50416 5.58622 5.65586 5.75810 5.85891 5.88547 5.94108 6.04336 6.08983 6.40934 6.57864 6.68543 6.87138 7.09842 7.17236 7.66085 7.89989 8.67110 8.93550 9.32131 10.83477 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.040496 B = 0.004985 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.259682 B = 5615.865912 C = 5883.956620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.111 3.889 3 C -0.155 4.155 4 O -0.364 6.364 5 C 0.049 3.951 6 C -0.147 4.147 7 C -0.019 4.019 8 H 0.110 0.890 9 C 0.168 3.832 10 N -0.397 5.397 11 O 0.059 5.941 12 C 0.237 3.763 13 C 0.101 3.899 14 C -0.525 4.525 15 H 0.060 0.940 16 C 0.067 3.933 17 N -0.888 5.888 18 Si 0.906 3.094 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.274 1.274 22 N -0.506 5.506 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.865 -5.751 -12.575 15.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.071 3.929 3 C -0.212 4.212 4 O -0.283 6.283 5 C -0.028 4.028 6 C -0.186 4.186 7 C -0.040 4.040 8 H 0.129 0.871 9 C -0.104 4.104 10 N -0.111 5.111 11 O 0.005 5.995 12 C 0.020 3.980 13 C 0.062 3.938 14 C -0.564 4.564 15 H 0.078 0.922 16 C -0.136 4.136 17 N -0.525 5.525 18 Si 0.733 3.267 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.200 1.200 22 N -0.240 5.240 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.106 0.894 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.907 -5.798 -13.328 16.092 hybrid contribution 0.577 -0.640 1.033 1.346 sum -6.330 -6.439 -12.294 15.253 Atomic orbital electron populations 1.22243 0.94184 1.02488 1.02908 1.21998 0.93566 0.93514 0.83859 1.22257 1.03975 0.93303 1.01691 1.88929 1.86142 1.20461 1.32765 1.23534 0.99728 0.84545 0.94967 1.23241 1.01396 0.97504 0.96418 1.20876 0.95744 0.92721 0.94630 0.87149 1.25109 0.94869 1.00588 0.89881 1.74489 1.11859 1.11843 1.12902 1.85273 1.45524 1.52297 1.16422 1.30114 0.83950 0.91592 0.92390 1.18198 0.99918 0.96083 0.79565 1.20750 1.31425 1.03775 1.00432 0.92150 1.24919 0.96051 0.95445 0.97219 1.69911 1.44566 1.20375 1.17656 0.86415 0.80669 0.80591 0.79033 1.19900 1.20895 1.19965 1.71954 1.23889 1.16747 1.11439 0.91175 0.91576 0.92135 0.89358 0.92148 0.91932 0.88725 0.91970 0.89748 0.89499 0.92402 0.91371 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 8.61 37.16 0.32 -1.47 16 2 C 0.11 1.53 1.19 -90.05 -0.11 1.42 16 3 C -0.16 -2.33 7.60 37.15 0.28 -2.04 16 4 O -0.36 -5.10 10.86 -35.23 -0.38 -5.48 16 5 C 0.05 0.54 7.67 38.21 0.29 0.83 16 6 C -0.15 -1.87 6.69 -24.72 -0.17 -2.04 16 7 C -0.02 -0.29 3.21 -90.24 -0.29 -0.58 16 8 H 0.11 1.51 7.70 -51.93 -0.40 1.11 16 9 C 0.17 3.17 5.28 -156.37 -0.83 2.35 16 10 N -0.40 -7.90 9.32 30.90 0.29 -7.61 16 11 O 0.06 1.26 11.31 18.10 0.20 1.47 16 12 C 0.24 5.30 7.70 -13.05 -0.10 5.20 16 13 C 0.10 2.46 5.60 -29.03 -0.16 2.29 16 14 C -0.52 -14.02 9.09 -34.44 -0.31 -14.33 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 16 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -24.50 13.29 55.43 0.74 -23.76 16 18 Si 0.91 20.61 29.54 -169.99 -5.02 15.59 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 N -0.51 -10.91 11.55 -9.87 -0.11 -11.02 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 26 H 0.09 1.51 5.67 -51.93 -0.29 1.21 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.98 7.61 -51.93 -0.40 0.58 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 31 H 0.08 1.23 7.76 -51.93 -0.40 0.82 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 35 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 293.31 15.07 4.42 4.42 Total: -1.00 -28.53 293.31 -5.87 -34.40 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -4.84 Total: -1.33 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -1.17 Total: -6.67 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.91 Total: -42.39 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.18 Total: -4.02 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.53 -5.87 -34.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693311483.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.930 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds