Wall clock time and date at job start Mon Mar 30 2020 03:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.86931 * 2 1 4 4 O 1.43746 * 109.87645 * 238.83862 * 2 1 3 5 5 C 1.44478 * 106.98554 * 267.08927 * 4 2 1 6 6 C 1.54998 * 103.44508 * 319.94809 * 5 4 2 7 7 C 1.54100 * 109.87705 * 121.00612 * 2 1 3 8 8 H 1.09001 * 110.60392 * 358.66912 * 7 2 1 9 9 C 1.50697 * 110.48995 * 236.06945 * 7 2 1 10 10 N 1.29946 * 126.28443 * 303.80794 * 9 7 2 11 11 O 1.21303 * 110.24960 * 179.97438 * 10 9 7 12 12 C 1.33642 * 109.81073 * 359.97438 * 11 10 9 13 13 C 1.50704 * 126.55123 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.46645 * 270.02346 * 13 12 11 15 15 H 1.07997 * 120.00175 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99571 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99947 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99643 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47282 * 60.00218 * 18 16 14 20 20 H 1.48496 * 109.46810 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47038 * 299.99780 * 18 16 14 22 22 N 1.31129 * 106.89861 * 359.76617 * 12 11 10 23 23 H 1.09002 * 109.46966 * 298.99127 * 1 2 3 24 24 H 1.08999 * 109.47103 * 58.99360 * 1 2 3 25 25 H 1.08999 * 109.46741 * 178.99403 * 1 2 3 26 26 H 1.08999 * 109.47436 * 181.00465 * 3 2 1 27 27 H 1.09005 * 109.47578 * 301.00341 * 3 2 1 28 28 H 1.09000 * 109.47518 * 61.00643 * 3 2 1 29 29 H 1.08997 * 110.65764 * 201.45460 * 5 4 2 30 30 H 1.08997 * 110.61802 * 78.42806 * 5 4 2 31 31 H 1.09002 * 110.90913 * 278.80261 * 6 5 4 32 32 H 1.08997 * 110.90321 * 155.23378 * 6 5 4 33 33 H 1.08993 * 109.46909 * 30.02313 * 13 12 11 34 34 H 1.08995 * 109.46885 * 150.02221 * 13 12 11 35 35 H 0.97004 * 120.00004 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0500 1.4388 0.0000 4 8 2.0188 -0.6995 -1.1568 5 6 2.2283 -2.0734 -0.7619 6 6 2.8325 -1.9516 0.6602 7 6 2.0540 -0.7465 1.2421 8 1 1.2252 -1.0907 1.8608 9 6 2.9744 0.1398 2.0410 10 7 4.0446 0.7317 1.6020 11 8 4.5643 1.3732 2.4908 12 6 3.8529 1.2480 3.6152 13 6 4.1582 1.8857 4.9461 14 6 5.0364 0.9655 5.7542 15 1 5.3432 0.0144 5.3448 16 6 5.4484 1.3380 7.0162 17 7 5.0753 2.4965 7.5144 18 14 6.5364 0.1971 8.0182 19 1 7.8042 -0.0484 7.2849 20 1 6.8363 0.8250 9.3300 21 1 5.8330 -1.0924 8.2364 22 7 2.8353 0.4688 3.3377 23 1 -0.3633 0.4981 0.8989 24 1 -0.3633 0.5294 -0.8808 25 1 -0.3633 -1.0275 -0.0180 26 1 3.1399 1.4314 -0.0180 27 1 1.6757 1.9606 -0.8809 28 1 1.7051 1.9499 0.8988 29 1 2.9298 -2.5646 -1.4362 30 1 1.2816 -2.6127 -0.7319 31 1 3.9004 -1.7383 0.6122 32 1 2.6437 -2.8540 1.2416 33 1 4.6742 2.8322 4.7855 34 1 3.2279 2.0658 5.4846 35 1 5.3647 2.7584 8.4025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693311483.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:15 Heat of formation + Delta-G solvation = -4.407066 kcal Electronic energy + Delta-G solvation = -18876.546513 eV Core-core repulsion = 15877.074915 eV Total energy + Delta-G solvation = -2999.471598 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -46.47520 -41.11630 -36.93057 -35.91063 -34.52214 -33.51590 -32.65188 -30.40095 -28.41048 -27.57956 -25.98574 -24.52972 -23.48804 -22.34235 -20.63023 -19.24872 -18.45434 -18.26197 -17.31056 -16.99951 -16.62864 -16.06233 -15.35973 -15.19141 -14.55936 -14.42625 -14.29061 -14.07063 -13.55429 -13.40329 -13.17292 -13.07103 -12.88407 -12.65046 -12.64419 -12.55964 -12.27217 -12.15444 -11.98749 -11.92137 -11.75575 -11.59563 -10.72175 -10.67480 -10.54514 -8.31395 -6.45065 0.24164 1.28956 1.44548 1.45205 1.54094 2.01649 2.39018 2.59569 2.74427 3.03003 3.16476 3.42600 3.66883 3.78849 3.98162 4.06322 4.15538 4.35698 4.49599 4.56625 4.61828 4.73849 4.78588 4.81219 4.88583 4.89965 4.94704 5.03255 5.09650 5.14184 5.21209 5.29982 5.57768 5.87250 5.89580 6.59039 7.23780 7.25869 8.79228 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.040496 B = 0.004985 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.259682 B = 5615.865912 C = 5883.956620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.113 3.887 3 C -0.155 4.155 4 O -0.382 6.382 5 C 0.051 3.949 6 C -0.146 4.146 7 C -0.028 4.028 8 H 0.125 0.875 9 C 0.179 3.821 10 N -0.401 5.401 11 O 0.047 5.953 12 C 0.228 3.772 13 C 0.110 3.890 14 C -0.545 4.545 15 H 0.053 0.947 16 C 0.023 3.977 17 N -0.916 5.916 18 Si 0.970 3.030 19 H -0.268 1.268 20 H -0.274 1.274 21 H -0.271 1.271 22 N -0.518 5.518 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.109 0.891 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.596 -7.564 -13.266 17.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.073 3.927 3 C -0.212 4.212 4 O -0.301 6.301 5 C -0.025 4.025 6 C -0.184 4.184 7 C -0.048 4.048 8 H 0.143 0.857 9 C -0.094 4.094 10 N -0.116 5.116 11 O -0.004 6.004 12 C 0.010 3.990 13 C 0.071 3.929 14 C -0.584 4.584 15 H 0.071 0.929 16 C -0.178 4.178 17 N -0.554 5.554 18 Si 0.793 3.207 19 H -0.193 1.193 20 H -0.199 1.199 21 H -0.196 1.196 22 N -0.252 5.252 23 H 0.088 0.912 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.129 0.871 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.127 0.873 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.624 -7.599 -14.026 17.681 hybrid contribution 0.777 -0.077 1.167 1.404 sum -6.848 -7.676 -12.859 16.467 Atomic orbital electron populations 1.22207 0.91806 1.03987 1.03306 1.22008 0.95182 0.92250 0.83304 1.22211 1.02331 0.94913 1.01739 1.88907 1.86409 1.22070 1.32761 1.23760 1.01494 0.83438 0.93808 1.23274 0.99786 0.97323 0.98041 1.21246 0.95664 0.92971 0.94911 0.85674 1.25837 0.94662 0.99774 0.89111 1.74525 1.12519 1.12235 1.12315 1.85265 1.45853 1.52927 1.16324 1.29675 0.84770 0.92346 0.92232 1.17890 0.98843 0.95736 0.80423 1.20985 1.32215 1.03916 1.01269 0.92898 1.25731 0.97135 0.96852 0.98090 1.69997 1.45416 1.21756 1.18188 0.85427 0.78887 0.78635 0.77714 1.19330 1.19917 1.19560 1.71946 1.23659 1.16712 1.12915 0.91211 0.90773 0.90119 0.91795 0.90707 0.93216 0.87071 0.89053 0.92081 0.87283 0.93035 0.92687 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 8.61 71.98 0.62 -2.41 16 2 C 0.11 2.89 1.19 -10.42 -0.01 2.88 16 3 C -0.15 -4.56 7.60 71.98 0.55 -4.01 16 4 O -0.38 -9.77 10.86 -148.98 -1.62 -11.39 16 5 C 0.05 0.95 7.67 72.67 0.56 1.50 16 6 C -0.15 -3.38 6.69 31.90 0.21 -3.16 16 7 C -0.03 -0.77 3.21 -10.55 -0.03 -0.81 16 8 H 0.13 3.11 7.70 -2.39 -0.02 3.09 16 9 C 0.18 6.71 5.28 138.46 0.73 7.44 16 10 N -0.40 -16.13 9.32 -60.32 -0.56 -16.70 16 11 O 0.05 2.07 11.31 74.84 0.85 2.91 16 12 C 0.23 10.46 7.70 88.38 0.68 11.14 16 13 C 0.11 5.52 5.60 29.10 0.16 5.68 16 14 C -0.55 -29.58 9.09 25.60 0.23 -29.35 16 15 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 16 C 0.02 1.22 5.46 84.66 0.46 1.69 16 17 N -0.92 -50.88 13.29 21.45 0.28 -50.60 16 18 Si 0.97 41.94 29.54 68.60 2.03 43.97 16 19 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 22 N -0.52 -22.44 11.55 -303.19 -3.50 -25.95 16 23 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.08 1.25 8.11 -2.39 -0.02 1.23 16 26 H 0.06 2.20 5.67 -2.39 -0.01 2.18 16 27 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 28 H 0.05 1.56 7.61 -2.39 -0.02 1.54 16 29 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.09 1.21 8.12 -2.39 -0.02 1.20 16 31 H 0.06 1.71 7.76 -2.39 -0.02 1.69 16 32 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.05 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -61.01 293.31 2.72 -58.29 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 1.08 Total: 8.87 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 4.16 Total: -9.41 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: -3.78 Total: -93.24 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -0.77 Total: -8.48 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -61.01 2.72 -58.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693311483.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.882 kcal (2) G-P(sol) polarization free energy of solvation -61.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds