Wall clock time and date at job start Mon Mar 30 2020 03:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00054 * 2 1 4 4 H 1.48497 * 109.47261 * 269.99681 * 3 2 1 5 5 H 1.48509 * 109.46853 * 29.99970 * 3 2 1 6 6 H 1.48501 * 109.47010 * 149.99703 * 3 2 1 7 7 C 1.37877 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99922 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99903 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.63769 * 298.31107 * 9 7 2 11 11 C 1.55154 * 110.72191 * 61.45166 * 9 7 2 12 12 C 1.54908 * 101.58289 * 154.04150 * 11 9 7 13 13 N 1.47425 * 104.92961 * 322.93718 * 12 11 9 14 14 C 1.34774 * 125.65138 * 204.15299 * 13 12 11 15 15 O 1.21280 * 120.00501 * 180.02562 * 14 13 12 16 16 C 1.50698 * 119.99753 * 0.02907 * 14 13 12 17 17 H 1.09004 * 110.21712 * 320.47088 * 16 14 13 18 18 C 1.54474 * 110.24957 * 82.49369 * 16 14 13 19 19 C 1.54631 * 101.76633 * 144.41522 * 18 16 14 20 20 C 1.51286 * 104.19562 * 335.20500 * 19 18 16 21 21 O 1.21281 * 124.94190 * 196.27683 * 20 19 18 22 22 N 1.34418 * 110.11284 * 16.25049 * 20 19 18 23 23 C 1.47290 * 108.55742 * 24.15407 * 13 12 11 24 24 H 0.97000 * 119.99926 * 0.02562 * 1 2 3 25 25 H 1.09008 * 111.00345 * 35.96620 * 11 9 7 26 26 H 1.08999 * 111.00564 * 272.11953 * 11 9 7 27 27 H 1.09002 * 110.36632 * 81.83114 * 12 11 9 28 28 H 1.08995 * 110.36781 * 204.04351 * 12 11 9 29 29 H 1.08995 * 110.97347 * 262.53183 * 18 16 14 30 30 H 1.09003 * 110.97253 * 26.30099 * 18 16 14 31 31 H 1.08996 * 110.49070 * 216.52480 * 19 18 16 32 32 H 1.09001 * 110.48515 * 93.88075 * 19 18 16 33 33 H 0.97001 * 124.34498 * 180.43267 * 22 20 19 34 34 H 1.09004 * 109.85762 * 239.50064 * 23 13 12 35 35 H 1.08995 * 110.00297 * 118.43011 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6396 -2.5898 0.8983 11 6 0.3764 -2.6281 -1.2745 12 6 0.2680 -4.1662 -1.4231 13 7 1.5874 -4.6812 -1.0138 14 6 2.1230 -5.8586 -1.3923 15 8 3.2211 -6.1821 -0.9918 16 6 1.3574 -6.7733 -2.3132 17 1 0.2993 -6.7724 -2.0510 18 6 1.5463 -6.3335 -3.7820 19 6 1.5679 -7.6932 -4.5180 20 6 2.0209 -8.6788 -3.4635 21 8 2.4357 -9.7959 -3.6892 22 7 1.8975 -8.1360 -2.2400 23 6 2.2203 -3.6937 -0.1229 24 1 -0.4850 0.8401 -0.0004 25 1 0.8756 -2.1864 -2.1370 26 1 -0.6055 -2.1802 -1.1217 27 1 -0.5113 -4.5566 -0.7686 28 1 0.0613 -4.4336 -2.4593 29 1 0.7086 -5.7219 -4.1169 30 1 2.4904 -5.8044 -3.9124 31 1 2.2764 -7.6677 -5.3459 32 1 0.5706 -7.9491 -4.8759 33 1 2.1352 -8.5869 -1.4147 34 1 3.1658 -3.3611 -0.5512 35 1 2.3928 -4.1340 0.8591 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700841085.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:53 Heat of formation + Delta-G solvation = -74.150490 kcal Electronic energy + Delta-G solvation = -18645.554505 eV Core-core repulsion = 15643.058605 eV Total energy + Delta-G solvation = -3002.495900 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.78967 -39.10100 -37.02863 -36.04949 -33.17214 -31.49675 -30.63665 -28.77987 -27.98018 -24.94826 -23.07289 -21.99530 -20.66867 -19.93497 -19.13146 -17.47222 -17.27266 -16.64681 -15.80652 -15.47088 -15.09272 -14.62637 -14.25217 -13.95613 -13.71853 -13.37315 -12.88158 -12.70847 -12.61519 -12.24106 -12.10808 -11.41540 -11.35987 -11.30490 -11.10786 -10.87237 -10.56081 -10.04302 -9.92562 -9.85576 -9.57471 -9.08912 -9.06019 -8.57305 -8.17216 -6.19023 -4.22638 2.45480 2.69567 3.04320 3.22243 3.29826 3.33518 3.50454 4.16495 4.24188 4.32167 4.55192 4.77453 4.86005 5.14613 5.17723 5.38904 5.48182 5.59619 5.72324 5.75439 5.85837 6.05988 6.19572 6.51741 6.59529 6.68178 6.89296 6.89788 6.98618 7.37960 7.59754 7.79741 7.91442 8.11164 8.18337 8.38198 8.78761 9.42970 10.90540 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.048762 B = 0.004555 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.078331 B = 6146.152493 C = 6278.539483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.044 3.956 10 H 0.040 0.960 11 C -0.107 4.107 12 C 0.085 3.915 13 N -0.604 5.604 14 C 0.511 3.489 15 O -0.545 6.545 16 C 0.116 3.884 17 H 0.104 0.896 18 C -0.121 4.121 19 C -0.154 4.154 20 C 0.523 3.477 21 O -0.538 6.538 22 N -0.707 5.707 23 C 0.111 3.889 24 H 0.262 0.738 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.415 0.585 34 H 0.063 0.937 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.255 -8.845 -6.802 11.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.078 0.922 9 C 0.025 3.975 10 H 0.058 0.942 11 C -0.146 4.146 12 C -0.037 4.037 13 N -0.336 5.336 14 C 0.297 3.703 15 O -0.423 6.423 16 C 0.007 3.993 17 H 0.122 0.878 18 C -0.159 4.159 19 C -0.194 4.194 20 C 0.309 3.691 21 O -0.415 6.415 22 N -0.363 5.363 23 C -0.011 4.011 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.108 0.892 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.254 0.746 34 H 0.081 0.919 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.608 -9.491 -6.821 11.975 hybrid contribution 0.421 0.918 0.475 1.116 sum -2.187 -8.573 -6.345 10.888 Atomic orbital electron populations 1.69927 1.05903 1.26862 1.49940 1.24932 0.94889 0.99153 0.94635 0.86554 0.79926 0.83132 0.78202 1.20602 1.21162 1.19811 1.21016 0.92962 0.89811 1.51737 0.92243 1.19726 0.92370 0.91058 0.94394 0.94180 1.22749 1.02600 0.88816 1.00394 1.22689 0.83920 0.98559 0.98526 1.48796 1.19592 1.17709 1.47523 1.20166 0.86521 0.81611 0.81971 1.90708 1.20502 1.74187 1.56890 1.21596 0.98399 0.82478 0.96870 0.87827 1.22603 1.05150 0.97257 0.90883 1.22371 1.04659 0.93905 0.98466 1.20836 0.76478 0.87148 0.84607 1.90751 1.46951 1.20224 1.83557 1.45963 1.65778 1.15029 1.09487 1.22438 0.98182 0.88845 0.91605 0.92814 0.92056 0.89557 0.91984 0.91947 0.87989 0.89210 0.87606 0.87364 0.74580 0.91877 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.22 12.11 55.43 0.67 -22.55 16 2 C 0.07 1.69 5.33 -17.82 -0.10 1.60 16 3 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.52 -13.05 8.51 -34.44 -0.29 -13.35 16 8 H 0.06 1.51 7.58 -52.49 -0.40 1.11 16 9 C 0.04 0.97 2.86 -89.94 -0.26 0.71 16 10 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 11 C -0.11 -2.08 5.75 -24.58 -0.14 -2.22 16 12 C 0.09 1.27 6.40 -2.53 -0.02 1.25 16 13 N -0.60 -10.24 3.34 -170.31 -0.57 -10.80 16 14 C 0.51 8.30 7.04 -10.99 -0.08 8.22 16 15 O -0.54 -10.93 16.92 5.56 0.09 -10.83 16 16 C 0.12 1.35 3.13 -68.17 -0.21 1.14 16 17 H 0.10 0.97 7.70 -51.93 -0.40 0.57 16 18 C -0.12 -1.14 6.33 -25.10 -0.16 -1.30 16 19 C -0.15 -1.39 6.86 -26.74 -0.18 -1.57 16 20 C 0.52 6.91 8.43 -10.86 -0.09 6.81 16 21 O -0.54 -9.15 18.03 5.56 0.10 -9.05 16 22 N -0.71 -8.92 5.47 -53.88 -0.29 -9.22 16 23 C 0.11 2.22 6.48 -2.92 -0.02 2.21 16 24 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 25 H 0.06 1.26 8.04 -51.92 -0.42 0.84 16 26 H 0.09 1.79 7.53 -51.93 -0.39 1.40 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.72 6.73 -51.93 -0.35 0.37 16 29 H 0.10 0.71 7.51 -51.93 -0.39 0.32 16 30 H 0.09 0.97 7.91 -51.93 -0.41 0.56 16 31 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.41 5.25 8.96 -40.82 -0.37 4.88 16 34 H 0.06 1.35 7.67 -51.93 -0.40 0.96 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 292.48 15.07 4.41 4.41 Total: -1.00 -30.60 292.48 -6.93 -37.53 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -4.77 Total: 2.02 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -1.55 Total: 3.51 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -0.19 Total: -42.57 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: 0.19 Total: -19.88 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.60 -6.93 -37.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700841085.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.621 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds