Wall clock time and date at job start Mon Mar 30 2020 03:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86809 * 119.99454 * 2 1 4 4 H 1.48499 * 109.47026 * 269.99499 * 3 2 1 5 5 H 1.48492 * 109.47049 * 29.99613 * 3 2 1 6 6 H 1.48495 * 109.46921 * 149.99870 * 3 2 1 7 7 C 1.37872 * 120.00713 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00321 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99931 * 359.97438 * 7 2 1 10 10 H 1.09008 * 110.88227 * 62.42629 * 9 7 2 11 11 C 1.55158 * 111.00461 * 298.55166 * 9 7 2 12 12 C 1.54329 * 102.93960 * 206.38251 * 11 9 7 13 13 N 1.47016 * 107.27213 * 22.19152 * 12 11 9 14 14 C 1.34774 * 125.64927 * 181.02380 * 13 12 11 15 15 O 1.21283 * 120.00283 * 180.02562 * 14 13 12 16 16 C 1.50699 * 119.99918 * 0.02562 * 14 13 12 17 17 H 1.09001 * 110.85424 * 303.79017 * 16 14 13 18 18 C 1.54480 * 110.96829 * 180.02562 * 16 14 13 19 19 N 1.46766 * 105.47089 * 216.46309 * 18 16 14 20 20 C 1.34413 * 111.30232 * 17.01742 * 19 18 16 21 21 O 1.21284 * 124.94565 * 179.56847 * 20 19 18 22 22 C 1.51284 * 110.11346 * 359.58991 * 20 19 18 23 23 C 1.47428 * 108.70542 * 1.28582 * 13 12 11 24 24 H 0.96991 * 120.00862 * 0.02562 * 1 2 3 25 25 H 1.09003 * 110.72276 * 88.01968 * 11 9 7 26 26 H 1.08997 * 110.87021 * 324.81115 * 11 9 7 27 27 H 1.08997 * 109.88160 * 262.77238 * 12 11 9 28 28 H 1.08998 * 109.87808 * 141.60730 * 12 11 9 29 29 H 1.09008 * 110.24751 * 97.46525 * 18 16 14 30 30 H 1.09001 * 110.25034 * 335.46038 * 18 16 14 31 31 H 0.97003 * 124.35016 * 196.75071 * 19 18 16 32 32 H 1.09008 * 110.48406 * 225.06682 * 22 20 19 33 33 H 1.09000 * 110.59809 * 102.48377 * 22 20 19 34 34 H 1.09003 * 110.36864 * 94.48258 * 23 13 12 35 35 H 1.09000 * 110.36731 * 216.80734 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4463 2.6527 0.6999 6 1 3.5465 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1938 0.0010 9 6 1.2513 -2.4991 0.0017 10 1 0.6484 -2.6006 -0.9008 11 6 0.3741 -2.6339 1.2745 12 6 0.2583 -4.1623 1.4541 13 7 1.3936 -4.7722 0.7467 14 6 1.6404 -6.0936 0.6497 15 8 2.6119 -6.4859 0.0387 16 6 0.7093 -7.0838 1.3005 17 1 0.6077 -6.8785 2.3662 18 6 1.1877 -8.5329 1.0603 19 7 -0.0355 -9.3256 0.8883 20 6 -1.0936 -8.5397 0.6246 21 8 -2.2232 -8.9371 0.4320 22 6 -0.6704 -7.0875 0.6024 23 6 2.2208 -3.6988 0.1662 24 1 -0.4851 0.8399 -0.0004 25 1 -0.6080 -2.1888 1.1149 26 1 0.8663 -2.1807 2.1350 27 1 -0.6792 -4.5159 1.0250 28 1 0.3024 -4.4153 2.5134 29 1 1.7517 -8.8916 1.9214 30 1 1.7997 -8.5837 0.1598 31 1 -0.0746 -10.2927 0.9526 32 1 -1.3806 -6.4746 1.1577 33 1 -0.5798 -6.7300 -0.4233 34 1 3.0362 -3.4407 0.8420 35 1 2.6133 -4.0047 -0.8036 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700855251.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:31 Heat of formation + Delta-G solvation = -96.772303 kcal Electronic energy + Delta-G solvation = -18656.057713 eV Core-core repulsion = 15652.580858 eV Total energy + Delta-G solvation = -3003.476855 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.82847 -40.41014 -38.47298 -37.18829 -34.98547 -33.04056 -31.64535 -29.99953 -28.75127 -27.01852 -24.73826 -22.97142 -21.80261 -21.42649 -20.02732 -18.80942 -18.46716 -18.08268 -17.07488 -16.75624 -16.51532 -16.02632 -15.75757 -15.15503 -14.70838 -14.55918 -14.35292 -14.10807 -14.03653 -13.45895 -13.36212 -12.99665 -12.88273 -12.66231 -12.47614 -12.39706 -12.24161 -11.55672 -11.31831 -11.24275 -10.90334 -10.77187 -10.49059 -10.14622 -9.54548 -8.13868 -6.23523 1.44565 1.45382 1.47060 1.55332 1.56527 1.98280 2.39627 2.46258 3.13565 3.19475 3.36936 3.63112 3.89843 4.07163 4.11262 4.34528 4.44027 4.52380 4.56410 4.61979 4.73717 4.83897 4.86448 4.93444 5.10490 5.31239 5.40410 5.62144 5.74078 5.83020 5.90980 5.94947 6.29668 6.65687 6.83066 7.10772 7.18012 7.44832 8.94975 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.044484 B = 0.004730 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.293055 B = 5918.788615 C = 6349.927476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.023 3.977 3 Si 0.952 3.048 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.535 4.535 8 H 0.055 0.945 9 C 0.037 3.963 10 H 0.009 0.991 11 C -0.103 4.103 12 C 0.100 3.900 13 N -0.609 5.609 14 C 0.532 3.468 15 O -0.583 6.583 16 C -0.109 4.109 17 H 0.148 0.852 18 C 0.118 3.882 19 N -0.715 5.715 20 C 0.522 3.478 21 O -0.579 6.579 22 C -0.144 4.144 23 C 0.119 3.881 24 H 0.263 0.737 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.079 0.921 31 H 0.422 0.578 32 H 0.128 0.872 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.503 -13.331 6.490 14.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.177 4.177 3 Si 0.778 3.222 4 H -0.206 1.206 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.573 4.573 8 H 0.073 0.927 9 C 0.018 3.982 10 H 0.027 0.973 11 C -0.141 4.141 12 C -0.022 4.022 13 N -0.340 5.340 14 C 0.322 3.678 15 O -0.464 6.464 16 C -0.130 4.130 17 H 0.166 0.834 18 C -0.006 4.006 19 N -0.370 5.370 20 C 0.309 3.691 21 O -0.459 6.459 22 C -0.184 4.184 23 C -0.004 4.004 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.136 0.864 30 H 0.097 0.903 31 H 0.263 0.737 32 H 0.146 0.854 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.307 -13.582 6.078 14.883 hybrid contribution 0.405 0.900 -0.361 1.051 sum 0.712 -12.682 5.717 13.929 Atomic orbital electron populations 1.70027 1.06991 1.27467 1.50612 1.25615 0.95616 1.02023 0.94474 0.85648 0.78860 0.79632 0.78064 1.20588 1.20838 1.19288 1.21277 0.93075 0.91342 1.51640 0.92692 1.19782 0.92844 0.91406 0.94147 0.97302 1.22378 1.00928 0.92232 0.98581 1.22371 0.88503 0.94007 0.97321 1.48713 1.27475 1.04994 1.52862 1.20279 0.85759 0.81690 0.80117 1.90671 1.31865 1.78798 1.45071 1.22193 0.93343 0.94051 1.03399 0.83390 1.22043 0.86124 0.87705 1.04709 1.46179 1.08957 1.10524 1.71361 1.20954 0.84009 0.89858 0.74307 1.90744 1.22320 1.80532 1.52346 1.22342 0.96938 0.95006 1.04121 1.22304 0.94402 0.86867 0.96823 0.92838 0.91690 0.93065 0.90144 0.88924 0.86383 0.90297 0.73726 0.85377 0.88238 0.92336 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.28 12.13 21.44 0.26 -49.02 16 2 C 0.02 1.18 5.34 84.65 0.45 1.64 16 3 Si 0.95 41.42 29.54 68.60 2.03 43.44 16 4 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.53 -27.66 8.56 25.60 0.22 -27.44 16 8 H 0.05 2.82 7.79 -2.91 -0.02 2.80 16 9 C 0.04 1.73 2.98 -10.07 -0.03 1.70 16 10 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 11 C -0.10 -4.10 5.64 31.79 0.18 -3.92 16 12 C 0.10 2.88 6.25 86.73 0.54 3.42 16 13 N -0.61 -19.79 3.32 -811.36 -2.70 -22.49 16 14 C 0.53 15.56 7.10 87.66 0.62 16.18 16 15 O -0.58 -21.06 15.76 -3.04 -0.05 -21.11 16 16 C -0.11 -2.06 2.91 -10.49 -0.03 -2.09 16 17 H 0.15 1.93 8.14 -2.39 -0.02 1.91 16 18 C 0.12 1.92 7.14 86.83 0.62 2.54 16 19 N -0.72 -12.13 6.24 -459.79 -2.87 -15.00 16 20 C 0.52 12.31 8.43 87.90 0.74 13.05 16 21 O -0.58 -18.64 18.03 -3.04 -0.05 -18.69 16 22 C -0.14 -2.95 5.37 30.58 0.16 -2.79 16 23 C 0.12 4.77 6.35 86.93 0.55 5.32 16 24 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 25 H 0.06 2.83 7.55 -2.39 -0.02 2.81 16 26 H 0.05 2.11 8.04 -2.39 -0.02 2.09 16 27 H 0.08 2.03 6.54 -2.39 -0.02 2.01 16 28 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.08 1.60 6.96 -2.39 -0.02 1.58 16 31 H 0.42 5.47 8.96 -92.71 -0.83 4.64 16 32 H 0.13 2.25 7.30 -2.38 -0.02 2.23 16 33 H 0.10 2.32 7.89 -2.39 -0.02 2.31 16 34 H 0.06 2.37 8.04 -2.39 -0.02 2.36 16 35 H 0.05 2.07 8.03 -2.39 -0.02 2.05 16 Total: -1.00 -66.33 290.38 0.92 -65.40 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 0.27 Total: 9.85 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 4.03 Total: 7.60 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -5.31 Total: -86.50 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -0.10 Total: -39.80 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Total: -66.33 0.92 -65.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700855251.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.368 kcal (2) G-P(sol) polarization free energy of solvation -66.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds