Wall clock time and date at job start Mon Mar 30 2020 03:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00339 * 2 1 4 4 H 1.48504 * 109.47151 * 274.67577 * 3 2 1 5 5 H 1.48505 * 109.47341 * 34.67204 * 3 2 1 6 6 H 1.48505 * 109.47683 * 154.67196 * 3 2 1 7 7 C 1.37883 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99895 * 185.99334 * 7 2 1 9 9 C 1.50701 * 119.99932 * 5.99544 * 7 2 1 10 10 H 1.09004 * 110.88297 * 309.05440 * 9 7 2 11 11 C 1.55153 * 111.03595 * 72.96156 * 9 7 2 12 12 C 1.54338 * 103.01617 * 153.39708 * 11 9 7 13 13 N 1.47022 * 107.26858 * 338.13906 * 12 11 9 14 14 C 1.34774 * 125.64737 * 178.85069 * 13 12 11 15 15 O 1.21279 * 119.99553 * 179.68992 * 14 13 12 16 16 C 1.50700 * 120.00162 * 359.69397 * 14 13 12 17 17 H 1.08999 * 110.85840 * 56.20567 * 16 14 13 18 18 C 1.54476 * 110.96904 * 179.97438 * 16 14 13 19 19 N 1.46764 * 105.47693 * 143.53216 * 18 16 14 20 20 C 1.34421 * 111.29676 * 342.98347 * 19 18 16 21 21 O 1.21277 * 124.94192 * 180.36653 * 20 19 18 22 22 C 1.51285 * 110.11747 * 0.63422 * 20 19 18 23 23 C 1.47428 * 108.70170 * 358.58588 * 13 12 11 24 24 H 0.96996 * 120.00165 * 0.02562 * 1 2 3 25 25 H 1.08997 * 110.71956 * 271.95034 * 11 9 7 26 26 H 1.08994 * 110.72604 * 35.05433 * 11 9 7 27 27 H 1.09005 * 109.98981 * 218.65911 * 12 11 9 28 28 H 1.08998 * 109.78209 * 97.49647 * 12 11 9 29 29 H 1.09000 * 110.25046 * 24.53124 * 18 16 14 30 30 H 1.09002 * 110.32161 * 262.57172 * 18 16 14 31 31 H 0.97001 * 124.35183 * 163.00043 * 19 18 16 32 32 H 1.09005 * 110.48421 * 134.70054 * 22 20 19 33 33 H 1.08992 * 110.48724 * 257.34490 * 22 20 19 34 34 H 1.08997 * 110.36623 * 143.19571 * 23 13 12 35 35 H 1.09003 * 110.36555 * 265.40900 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.3979 2.1034 -1.3954 5 1 1.4996 2.6222 0.7965 6 1 3.5927 1.4136 0.5990 7 6 2.0045 -1.1941 0.0005 8 1 3.0800 -1.1966 0.0982 9 6 1.2572 -2.4957 -0.1352 10 1 0.4387 -2.5505 0.5827 11 6 0.7397 -2.6923 -1.5846 12 6 0.6558 -4.2275 -1.7185 13 7 1.5543 -4.8036 -0.7075 14 6 1.7474 -6.1190 -0.4864 15 8 2.5206 -6.4820 0.3746 16 6 1.0027 -7.1387 -1.3091 17 1 1.1848 -6.9869 -2.3730 18 6 1.3802 -8.5748 -0.8834 19 7 0.1427 -9.3554 -0.9981 20 6 -0.9357 -8.5550 -1.0570 21 8 -2.0822 -8.9398 -1.1475 22 6 -0.5105 -7.1042 -1.0006 23 6 2.2139 -3.7041 0.0202 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2432 -2.2378 -1.7082 26 1 1.4465 -2.2814 -2.3055 27 1 0.9749 -4.5327 -2.7152 28 1 -0.3669 -4.5583 -1.5371 29 1 1.7364 -8.5817 0.1468 30 1 2.1437 -8.9784 -1.5485 31 1 0.1074 -10.3243 -1.0274 32 1 -1.0413 -6.5216 -1.7537 33 1 -0.6856 -6.6938 -0.0062 34 1 2.3312 -3.9623 1.0726 35 1 3.1836 -3.4821 -0.4256 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700855253.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:35 Heat of formation + Delta-G solvation = -97.824970 kcal Electronic energy + Delta-G solvation = -18633.736773 eV Core-core repulsion = 15630.214271 eV Total energy + Delta-G solvation = -3003.522502 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.83307 -40.41424 -38.47497 -37.19218 -34.97398 -33.06883 -31.70028 -29.99458 -28.75300 -27.02763 -24.74629 -22.98901 -21.80017 -21.43134 -20.02969 -18.82284 -18.48085 -18.13475 -17.08059 -16.73496 -16.52572 -16.02881 -15.74222 -15.16184 -14.71671 -14.55711 -14.31946 -14.11459 -14.04997 -13.48753 -13.37567 -13.05207 -12.91818 -12.59382 -12.44804 -12.40840 -12.26093 -11.60711 -11.31579 -11.24099 -10.95187 -10.77728 -10.49481 -10.14677 -9.54809 -8.15636 -6.23710 1.44124 1.45293 1.46786 1.55408 1.56514 1.97826 2.39469 2.46147 3.12710 3.18349 3.37272 3.63099 3.90229 4.05592 4.09829 4.35760 4.41971 4.52135 4.56062 4.61324 4.73276 4.83913 4.86046 4.93656 5.09665 5.29063 5.37759 5.58165 5.74035 5.78043 5.88336 5.94926 6.29791 6.65343 6.84550 7.10742 7.17915 7.44131 8.94550 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.043948 B = 0.004709 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.963802 B = 5945.218908 C = 6352.913499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.022 3.978 3 Si 0.952 3.048 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.532 4.532 8 H 0.056 0.944 9 C 0.037 3.963 10 H 0.014 0.986 11 C -0.112 4.112 12 C 0.102 3.898 13 N -0.609 5.609 14 C 0.532 3.468 15 O -0.583 6.583 16 C -0.108 4.108 17 H 0.149 0.851 18 C 0.118 3.882 19 N -0.715 5.715 20 C 0.522 3.478 21 O -0.579 6.579 22 C -0.144 4.144 23 C 0.118 3.882 24 H 0.263 0.737 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.422 0.578 32 H 0.129 0.871 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.243 -13.662 -6.722 15.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.178 4.178 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.570 4.570 8 H 0.075 0.925 9 C 0.018 3.982 10 H 0.032 0.968 11 C -0.151 4.151 12 C -0.020 4.020 13 N -0.341 5.341 14 C 0.322 3.678 15 O -0.464 6.464 16 C -0.129 4.129 17 H 0.167 0.833 18 C -0.006 4.006 19 N -0.370 5.370 20 C 0.309 3.691 21 O -0.459 6.459 22 C -0.184 4.184 23 C -0.004 4.004 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.114 0.886 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.137 0.863 31 H 0.263 0.737 32 H 0.147 0.853 33 H 0.116 0.884 34 H 0.065 0.935 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.936 -13.894 -6.306 15.381 hybrid contribution 0.271 0.907 0.404 1.029 sum 2.207 -12.988 -5.902 14.435 Atomic orbital electron populations 1.70052 1.07212 1.27528 1.50767 1.25647 0.95522 1.02204 0.94445 0.85635 0.78785 0.79570 0.78220 1.19847 1.21310 1.19414 1.21287 0.93531 0.91404 1.50783 0.92542 1.19750 0.93482 0.91274 0.93721 0.96815 1.22507 1.00995 0.92766 0.98791 1.22330 0.93849 0.94129 0.91711 1.48702 1.43548 1.04913 1.36908 1.20280 0.82108 0.81897 0.83559 1.90672 1.39678 1.80014 1.36047 1.22161 0.94151 0.93698 1.02936 0.83292 1.22039 0.86442 0.88151 1.03968 1.46180 1.07095 1.10188 1.73570 1.20961 0.84331 0.89836 0.74015 1.90742 1.21418 1.81128 1.52651 1.22319 0.94966 0.94987 1.06138 1.22266 0.96588 0.86383 0.95197 0.92845 0.92270 0.92309 0.88614 0.90193 0.90367 0.86337 0.73727 0.85277 0.88360 0.93475 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.43 13.19 21.45 0.28 -50.15 16 2 C 0.02 1.13 5.40 84.66 0.46 1.59 16 3 Si 0.95 41.47 29.54 68.60 2.03 43.50 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.53 -27.44 8.45 25.60 0.22 -27.22 16 8 H 0.06 2.88 7.75 -2.91 -0.02 2.86 16 9 C 0.04 1.71 2.77 -10.15 -0.03 1.68 16 10 H 0.01 0.72 8.07 -2.38 -0.02 0.70 16 11 C -0.11 -4.33 6.29 31.79 0.20 -4.13 16 12 C 0.10 2.85 6.26 86.73 0.54 3.39 16 13 N -0.61 -19.62 3.33 -811.75 -2.70 -22.32 16 14 C 0.53 15.49 7.11 87.66 0.62 16.11 16 15 O -0.58 -21.10 15.76 -3.02 -0.05 -21.14 16 16 C -0.11 -2.02 2.90 -10.54 -0.03 -2.05 16 17 H 0.15 1.87 8.14 -2.39 -0.02 1.85 16 18 C 0.12 1.90 7.15 86.83 0.62 2.52 16 19 N -0.72 -12.09 6.24 -459.81 -2.87 -14.96 16 20 C 0.52 12.27 8.43 87.90 0.74 13.01 16 21 O -0.58 -18.62 18.03 -3.02 -0.05 -18.67 16 22 C -0.14 -2.94 5.37 30.54 0.16 -2.77 16 23 C 0.12 4.75 6.35 86.86 0.55 5.30 16 24 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 25 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.06 2.28 8.03 -2.39 -0.02 2.26 16 27 H 0.10 2.00 8.14 -2.38 -0.02 1.99 16 28 H 0.08 1.97 6.54 -2.39 -0.02 1.95 16 29 H 0.08 1.59 6.96 -2.39 -0.02 1.57 16 30 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.42 5.45 8.96 -92.71 -0.83 4.62 16 32 H 0.13 2.22 7.31 -2.38 -0.02 2.21 16 33 H 0.10 2.31 7.88 -2.39 -0.02 2.29 16 34 H 0.05 2.01 8.04 -2.39 -0.02 1.99 16 35 H 0.06 2.37 8.00 -2.39 -0.02 2.35 16 Total: -1.00 -67.33 292.31 0.97 -66.36 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.27 Total: 9.96 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 4.06 Total: 7.43 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -5.29 Total: -87.43 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -0.10 Total: -39.82 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -67.33 0.97 -66.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700855253.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.464 kcal (2) G-P(sol) polarization free energy of solvation -67.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds