Wall clock time and date at job start Mon Mar 30 2020 03:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00320 * 2 1 4 4 H 1.48501 * 109.46970 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46895 * 300.00010 * 3 2 1 6 6 H 1.48497 * 109.47153 * 60.00171 * 3 2 1 7 7 C 1.37876 * 119.99549 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00119 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00093 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.88630 * 303.87956 * 9 7 2 11 11 C 1.55159 * 111.00681 * 67.80431 * 9 7 2 12 12 C 1.54329 * 103.02245 * 153.37827 * 11 9 7 13 13 N 1.47019 * 107.26632 * 338.14378 * 12 11 9 14 14 C 1.34784 * 125.64840 * 178.84700 * 13 12 11 15 15 O 1.21279 * 119.99925 * 179.69086 * 14 13 12 16 16 C 1.50700 * 119.99961 * 359.69318 * 14 13 12 17 17 H 1.09005 * 110.85411 * 303.79083 * 16 14 13 18 18 C 1.54471 * 110.97054 * 180.02562 * 16 14 13 19 19 N 1.46771 * 105.47391 * 216.46475 * 18 16 14 20 20 C 1.34419 * 111.29476 * 17.01216 * 19 18 16 21 21 O 1.21291 * 124.93416 * 179.55778 * 20 19 18 22 22 C 1.51273 * 110.12235 * 359.59530 * 20 19 18 23 23 C 1.47426 * 108.70490 * 358.58408 * 13 12 11 24 24 H 0.97004 * 119.99148 * 359.97438 * 1 2 3 25 25 H 1.08997 * 110.72042 * 271.94063 * 11 9 7 26 26 H 1.09009 * 110.71367 * 35.03393 * 11 9 7 27 27 H 1.08995 * 109.99478 * 218.66408 * 12 11 9 28 28 H 1.09007 * 109.77876 * 97.49919 * 12 11 9 29 29 H 1.09005 * 110.24459 * 335.45954 * 18 16 14 30 30 H 1.08997 * 110.25193 * 97.46435 * 18 16 14 31 31 H 0.96995 * 124.35220 * 197.03660 * 19 18 16 32 32 H 1.09002 * 110.49080 * 225.07192 * 22 20 19 33 33 H 1.09001 * 110.48867 * 102.42055 * 22 20 19 34 34 H 1.09002 * 110.36613 * 143.19417 * 23 13 12 35 35 H 1.08998 * 110.36249 * 265.40947 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.5653 -2.5512 0.8475 11 6 0.4984 -2.7081 -1.3390 12 6 0.4002 -4.2445 -1.4469 13 7 1.4583 -4.8101 -0.5972 14 6 1.6918 -6.1233 -0.4030 15 8 2.6002 -6.4775 0.3183 16 6 0.8243 -7.1514 -1.0823 17 1 -0.2261 -6.9972 -0.8351 18 6 1.2736 -8.5831 -0.7156 19 7 1.0813 -9.3781 -1.9343 20 6 0.9539 -8.5903 -3.0160 21 8 0.7926 -8.9886 -4.1502 22 6 1.0420 -7.1349 -2.6131 23 6 2.2256 -3.7032 0.0022 24 1 -0.4849 0.8402 0.0004 25 1 -0.4934 -2.2578 -1.2988 26 1 1.0724 -2.2999 -2.1710 27 1 0.5489 -4.5558 -2.4808 28 1 -0.5760 -4.5774 -1.0942 29 1 2.3243 -8.5860 -0.4254 30 1 0.6572 -8.9767 0.0926 31 1 1.0498 -10.3473 -1.9563 32 1 0.2598 -6.5553 -3.1034 33 1 2.0253 -6.7311 -2.8542 34 1 2.5190 -3.9534 1.0217 35 1 3.1056 -3.4812 -0.6015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700855254.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:37 Heat of formation + Delta-G solvation = -75.934132 kcal Electronic energy + Delta-G solvation = -18616.513212 eV Core-core repulsion = 15613.939968 eV Total energy + Delta-G solvation = -3002.573244 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.77716 -39.16790 -37.05239 -36.09200 -33.19165 -31.88202 -30.18688 -28.46755 -27.83665 -25.31628 -23.39546 -21.73886 -20.76971 -19.82307 -18.80420 -17.56870 -17.37495 -16.63734 -15.71328 -15.28775 -15.09735 -14.68456 -14.40676 -14.11968 -13.70388 -13.34417 -12.94420 -12.81409 -12.62017 -12.13308 -11.78845 -11.54851 -11.46095 -11.29128 -11.07014 -10.80681 -10.51974 -10.19755 -9.87535 -9.61441 -9.45662 -9.25876 -9.05748 -8.53877 -8.15208 -6.17211 -4.20776 2.42620 2.77728 3.09991 3.22881 3.31710 3.34460 3.40019 4.09696 4.28327 4.34397 4.62051 4.78338 5.03426 5.17542 5.30311 5.39031 5.52674 5.58267 5.70243 5.77390 5.92050 6.12324 6.27482 6.51761 6.56837 6.68348 6.78846 6.90287 6.99465 7.36851 7.62703 7.82189 7.95935 8.05788 8.20612 8.40417 8.81821 9.44980 10.92978 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.045720 B = 0.004588 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.277953 B = 6101.764657 C = 6389.980515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.061 0.939 9 C 0.046 3.954 10 H 0.043 0.957 11 C -0.114 4.114 12 C 0.091 3.909 13 N -0.605 5.605 14 C 0.532 3.468 15 O -0.551 6.551 16 C -0.121 4.121 17 H 0.115 0.885 18 C 0.115 3.885 19 N -0.731 5.731 20 C 0.523 3.477 21 O -0.537 6.537 22 C -0.145 4.145 23 C 0.107 3.893 24 H 0.262 0.738 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.411 0.589 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.063 0.937 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.212 -12.631 -2.092 12.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.079 0.921 9 C 0.027 3.973 10 H 0.061 0.939 11 C -0.153 4.153 12 C -0.032 4.032 13 N -0.336 5.336 14 C 0.319 3.681 15 O -0.430 6.430 16 C -0.143 4.143 17 H 0.133 0.867 18 C -0.010 4.010 19 N -0.387 5.387 20 C 0.310 3.690 21 O -0.413 6.413 22 C -0.186 4.186 23 C -0.014 4.014 24 H 0.071 0.929 25 H 0.099 0.901 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.250 0.750 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.082 0.918 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.955 -12.835 -2.293 13.073 hybrid contribution 0.249 0.605 0.041 0.655 sum -0.707 -12.230 -2.251 12.455 Atomic orbital electron populations 1.69954 1.05956 1.26770 1.49904 1.24953 0.94868 0.99210 0.94620 0.86501 0.80204 0.83479 0.77649 1.19652 1.20955 1.20958 1.20982 0.93034 0.89760 1.51651 0.92118 1.19848 0.92752 0.91052 0.93661 0.93903 1.22671 1.02764 0.88846 1.00996 1.22364 0.89734 0.97936 0.93127 1.48706 1.33222 1.04848 1.46851 1.19566 0.84614 0.82121 0.81823 1.90677 1.32732 1.79975 1.39624 1.22198 1.01946 0.94611 0.95529 0.86673 1.21999 1.03665 0.88661 0.86668 1.46248 1.74202 1.09606 1.08665 1.20809 0.74647 0.89229 0.84353 1.90760 1.50000 1.79965 1.20614 1.22345 1.06213 0.95423 0.94575 1.22655 0.95676 0.85893 0.97192 0.92867 0.90118 0.91987 0.92473 0.92346 0.88811 0.89627 0.75043 0.86959 0.87232 0.91840 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.73 12.62 55.43 0.70 -23.03 16 2 C 0.07 1.71 5.37 -17.82 -0.10 1.61 16 3 Si 0.89 20.14 29.54 -169.99 -5.02 15.12 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -13.09 8.49 -34.44 -0.29 -13.38 16 8 H 0.06 1.53 7.77 -52.49 -0.41 1.13 16 9 C 0.05 1.04 2.85 -89.62 -0.26 0.79 16 10 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 11 C -0.11 -2.27 5.90 -24.89 -0.15 -2.42 16 12 C 0.09 1.42 6.20 -3.06 -0.02 1.40 16 13 N -0.60 -10.30 3.33 -170.52 -0.57 -10.86 16 14 C 0.53 8.34 7.11 -10.98 -0.08 8.26 16 15 O -0.55 -10.28 15.76 5.56 0.09 -10.19 16 16 C -0.12 -1.36 2.91 -90.14 -0.26 -1.62 16 17 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 18 C 0.11 1.12 7.14 -3.12 -0.02 1.10 16 19 N -0.73 -7.15 6.24 -59.20 -0.37 -7.52 16 20 C 0.52 6.58 8.43 -10.86 -0.09 6.49 16 21 O -0.54 -8.76 18.03 5.55 0.10 -8.66 16 22 C -0.15 -1.62 5.37 -26.74 -0.14 -1.77 16 23 C 0.11 2.14 6.34 -2.53 -0.02 2.12 16 24 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 25 H 0.08 1.72 7.84 -51.93 -0.41 1.31 16 26 H 0.06 1.27 8.03 -51.92 -0.42 0.86 16 27 H 0.06 0.76 6.68 -51.93 -0.35 0.41 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 1.05 6.96 -51.93 -0.36 0.69 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.41 3.19 8.96 -40.82 -0.37 2.82 16 32 H 0.11 1.13 7.37 -51.93 -0.38 0.74 16 33 H 0.11 1.29 7.89 -51.93 -0.41 0.88 16 34 H 0.06 1.31 8.04 -51.93 -0.42 0.89 16 35 H 0.06 1.24 8.02 -51.93 -0.42 0.82 16 LS Contribution 291.40 15.07 4.39 4.39 Total: -1.00 -30.13 291.40 -6.86 -36.99 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -4.76 Total: 1.20 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -1.42 Total: 2.57 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: -0.24 Total: -41.41 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.19 Total: -18.85 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.13 -6.86 -36.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700855254.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.946 kcal (2) G-P(sol) polarization free energy of solvation -30.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds