Wall clock time and date at job start Mon Mar 30 2020 03:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00320 * 2 1 4 4 H 1.48501 * 109.46970 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46895 * 300.00010 * 3 2 1 6 6 H 1.48497 * 109.47153 * 60.00171 * 3 2 1 7 7 C 1.37876 * 119.99549 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00119 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00093 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.88630 * 303.87956 * 9 7 2 11 11 C 1.55159 * 111.00681 * 67.80431 * 9 7 2 12 12 C 1.54329 * 103.02245 * 153.37827 * 11 9 7 13 13 N 1.47019 * 107.26632 * 338.14378 * 12 11 9 14 14 C 1.34784 * 125.64840 * 178.84700 * 13 12 11 15 15 O 1.21279 * 119.99925 * 179.69086 * 14 13 12 16 16 C 1.50700 * 119.99961 * 359.69318 * 14 13 12 17 17 H 1.09005 * 110.85411 * 303.79083 * 16 14 13 18 18 C 1.54471 * 110.97054 * 180.02562 * 16 14 13 19 19 N 1.46771 * 105.47391 * 216.46475 * 18 16 14 20 20 C 1.34419 * 111.29476 * 17.01216 * 19 18 16 21 21 O 1.21291 * 124.93416 * 179.55778 * 20 19 18 22 22 C 1.51273 * 110.12235 * 359.59530 * 20 19 18 23 23 C 1.47426 * 108.70490 * 358.58408 * 13 12 11 24 24 H 0.97004 * 119.99148 * 359.97438 * 1 2 3 25 25 H 1.08997 * 110.72042 * 271.94063 * 11 9 7 26 26 H 1.09009 * 110.71367 * 35.03393 * 11 9 7 27 27 H 1.08995 * 109.99478 * 218.66408 * 12 11 9 28 28 H 1.09007 * 109.77876 * 97.49919 * 12 11 9 29 29 H 1.09005 * 110.24459 * 335.45954 * 18 16 14 30 30 H 1.08997 * 110.25193 * 97.46435 * 18 16 14 31 31 H 0.96995 * 124.35220 * 197.03660 * 19 18 16 32 32 H 1.09002 * 110.49080 * 225.07192 * 22 20 19 33 33 H 1.09001 * 110.48867 * 102.42055 * 22 20 19 34 34 H 1.09002 * 110.36613 * 143.19417 * 23 13 12 35 35 H 1.08998 * 110.36249 * 265.40947 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.5653 -2.5512 0.8475 11 6 0.4984 -2.7081 -1.3390 12 6 0.4002 -4.2445 -1.4469 13 7 1.4583 -4.8101 -0.5972 14 6 1.6918 -6.1233 -0.4030 15 8 2.6002 -6.4775 0.3183 16 6 0.8243 -7.1514 -1.0823 17 1 -0.2261 -6.9972 -0.8351 18 6 1.2736 -8.5831 -0.7156 19 7 1.0813 -9.3781 -1.9343 20 6 0.9539 -8.5903 -3.0160 21 8 0.7926 -8.9886 -4.1502 22 6 1.0420 -7.1349 -2.6131 23 6 2.2256 -3.7032 0.0022 24 1 -0.4849 0.8402 0.0004 25 1 -0.4934 -2.2578 -1.2988 26 1 1.0724 -2.2999 -2.1710 27 1 0.5489 -4.5558 -2.4808 28 1 -0.5760 -4.5774 -1.0942 29 1 2.3243 -8.5860 -0.4254 30 1 0.6572 -8.9767 0.0926 31 1 1.0498 -10.3473 -1.9563 32 1 0.2598 -6.5553 -3.1034 33 1 2.0253 -6.7311 -2.8542 34 1 2.5190 -3.9534 1.0217 35 1 3.1056 -3.4812 -0.6015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700855254.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:36 Heat of formation + Delta-G solvation = -97.576339 kcal Electronic energy + Delta-G solvation = -18617.451688 eV Core-core repulsion = 15613.939968 eV Total energy + Delta-G solvation = -3003.511721 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.82664 -40.41022 -38.47453 -37.18379 -34.97802 -33.05357 -31.66297 -30.00044 -28.74886 -27.02293 -24.75240 -22.97771 -21.73368 -21.47246 -20.03585 -18.75553 -18.39077 -18.34190 -16.99872 -16.59073 -16.46604 -16.25889 -15.63726 -15.33653 -14.67486 -14.41677 -14.28025 -14.17409 -14.09365 -13.55202 -13.31130 -12.98655 -12.89238 -12.58982 -12.52812 -12.39236 -12.24087 -11.61348 -11.32926 -11.20496 -10.92449 -10.77412 -10.49116 -10.14522 -9.55023 -8.15125 -6.23707 1.43006 1.46027 1.46862 1.55829 1.57036 1.98016 2.39676 2.46195 3.13224 3.19019 3.37181 3.62763 3.89899 4.07510 4.10148 4.37947 4.41217 4.52506 4.54625 4.62625 4.74019 4.83700 4.86427 4.93532 5.10160 5.30469 5.39337 5.60346 5.73944 5.80470 5.89994 5.95465 6.29901 6.65391 6.83632 7.10696 7.18254 7.44488 8.94645 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.045720 B = 0.004588 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.277953 B = 6101.764657 C = 6389.980515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.022 3.978 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.533 4.533 8 H 0.054 0.946 9 C 0.039 3.961 10 H 0.014 0.986 11 C -0.108 4.108 12 C 0.101 3.899 13 N -0.609 5.609 14 C 0.533 3.467 15 O -0.583 6.583 16 C -0.110 4.110 17 H 0.145 0.855 18 C 0.118 3.882 19 N -0.716 5.716 20 C 0.521 3.479 21 O -0.579 6.579 22 C -0.142 4.142 23 C 0.118 3.882 24 H 0.263 0.737 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.422 0.578 32 H 0.130 0.870 33 H 0.104 0.896 34 H 0.050 0.950 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.745 -13.656 -2.486 13.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.178 4.178 3 Si 0.778 3.222 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.209 1.209 7 C -0.571 4.571 8 H 0.073 0.927 9 C 0.019 3.981 10 H 0.032 0.968 11 C -0.146 4.146 12 C -0.021 4.021 13 N -0.341 5.341 14 C 0.322 3.678 15 O -0.464 6.464 16 C -0.131 4.131 17 H 0.162 0.838 18 C -0.006 4.006 19 N -0.371 5.371 20 C 0.308 3.692 21 O -0.459 6.459 22 C -0.182 4.182 23 C -0.005 4.005 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.133 0.867 31 H 0.262 0.738 32 H 0.148 0.852 33 H 0.122 0.878 34 H 0.069 0.931 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.489 -13.889 -2.667 14.221 hybrid contribution 0.459 0.904 0.236 1.041 sum -1.030 -12.985 -2.430 13.250 Atomic orbital electron populations 1.70043 1.07005 1.27412 1.50779 1.25617 0.95611 1.02040 0.94506 0.85601 0.79101 0.79954 0.77576 1.19388 1.20505 1.20878 1.21310 0.93046 0.91360 1.51376 0.92746 1.19738 0.92974 0.91208 0.94135 0.96791 1.22442 1.01011 0.92365 0.98795 1.22341 0.90486 0.94413 0.94818 1.48709 1.33311 1.04916 1.47114 1.20272 0.84437 0.81944 0.81158 1.90671 1.34286 1.80345 1.41095 1.22186 1.02342 0.93640 0.94965 0.83762 1.22029 1.03511 0.87950 0.87114 1.46189 1.72649 1.10223 1.08014 1.20981 0.74128 0.89964 0.84085 1.90746 1.52237 1.80648 1.22303 1.22346 1.06605 0.94847 0.94398 1.22262 0.95180 0.86266 0.96743 0.92841 0.91795 0.93005 0.89261 0.89742 0.90180 0.86670 0.73765 0.85218 0.87790 0.93101 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.38 12.62 21.45 0.27 -49.11 16 2 C 0.02 1.15 5.37 84.65 0.45 1.61 16 3 Si 0.95 41.49 29.54 68.60 2.03 43.52 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.53 -27.49 8.49 25.60 0.22 -27.28 16 8 H 0.05 2.80 7.77 -2.91 -0.02 2.78 16 9 C 0.04 1.78 2.85 -10.15 -0.03 1.75 16 10 H 0.01 0.71 8.14 -2.38 -0.02 0.69 16 11 C -0.11 -4.23 5.90 31.79 0.19 -4.05 16 12 C 0.10 2.88 6.20 86.73 0.54 3.42 16 13 N -0.61 -19.70 3.33 -811.77 -2.70 -22.40 16 14 C 0.53 15.53 7.11 87.66 0.62 16.15 16 15 O -0.58 -21.05 15.76 -3.03 -0.05 -21.10 16 16 C -0.11 -2.08 2.91 -10.48 -0.03 -2.11 16 17 H 0.14 2.01 8.14 -2.38 -0.02 1.99 16 18 C 0.12 1.92 7.14 86.83 0.62 2.54 16 19 N -0.72 -11.90 6.24 -459.80 -2.87 -14.77 16 20 C 0.52 11.84 8.43 87.89 0.74 12.58 16 21 O -0.58 -18.05 18.03 -3.06 -0.06 -18.10 16 22 C -0.14 -2.72 5.37 30.59 0.16 -2.55 16 23 C 0.12 4.74 6.34 86.86 0.55 5.29 16 24 H 0.26 13.53 8.31 -92.70 -0.77 12.76 16 25 H 0.06 2.72 7.84 -2.39 -0.02 2.70 16 26 H 0.05 2.11 8.03 -2.38 -0.02 2.09 16 27 H 0.09 2.02 6.68 -2.39 -0.02 2.01 16 28 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 29 H 0.08 1.61 6.96 -2.38 -0.02 1.59 16 30 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.42 5.38 8.96 -92.71 -0.83 4.55 16 32 H 0.13 2.07 7.37 -2.39 -0.02 2.05 16 33 H 0.10 2.18 7.89 -2.39 -0.02 2.16 16 34 H 0.05 2.13 8.04 -2.39 -0.02 2.11 16 35 H 0.05 2.25 8.02 -2.39 -0.02 2.23 16 Total: -1.00 -66.14 291.40 0.94 -65.20 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 0.27 Total: 9.41 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 4.04 Total: 7.35 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -5.30 Total: -86.28 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -0.10 Total: -39.20 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -66.14 0.94 -65.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700855254.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.375 kcal (2) G-P(sol) polarization free energy of solvation -66.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds