Wall clock time and date at job start Mon Mar 30 2020 03:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99864 * 2 1 4 4 H 1.48500 * 109.47022 * 270.00103 * 3 2 1 5 5 H 1.48496 * 109.47163 * 29.99950 * 3 2 1 6 6 H 1.48497 * 109.47148 * 150.00363 * 3 2 1 7 7 C 1.37876 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00000 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99838 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.64213 * 56.86172 * 9 7 2 11 11 C 1.55156 * 110.87602 * 293.61392 * 9 7 2 12 12 C 1.55128 * 101.48744 * 205.90136 * 11 9 7 13 13 N 1.47426 * 104.72183 * 37.29026 * 12 11 9 14 14 C 1.34781 * 125.64342 * 155.82187 * 13 12 11 15 15 O 1.21284 * 119.99434 * 179.69419 * 14 13 12 16 16 C 1.50696 * 120.00427 * 359.68825 * 14 13 12 17 17 H 1.09002 * 110.88686 * 303.81878 * 16 14 13 18 18 C 1.54663 * 110.81735 * 67.80589 * 16 14 13 19 19 N 1.46766 * 105.38117 * 143.78304 * 18 16 14 20 20 C 1.34426 * 111.29916 * 342.58270 * 19 18 16 21 21 O 1.21277 * 124.94294 * 180.65470 * 20 19 18 22 22 C 1.51285 * 110.11504 * 0.67929 * 20 19 18 23 23 C 1.47014 * 108.70667 * 335.55392 * 13 12 11 24 24 H 0.97003 * 120.00398 * 359.97438 * 1 2 3 25 25 H 1.09007 * 110.99949 * 324.13531 * 11 9 7 26 26 H 1.09001 * 111.00522 * 87.94928 * 11 9 7 27 27 H 1.08999 * 110.49537 * 278.45310 * 12 11 9 28 28 H 1.08997 * 110.34548 * 156.06130 * 12 11 9 29 29 H 1.08999 * 110.40049 * 24.75181 * 18 16 14 30 30 H 1.09001 * 110.18102 * 262.69053 * 18 16 14 31 31 H 0.97001 * 124.35394 * 162.85956 * 19 18 16 32 32 H 1.08992 * 110.48514 * 134.92606 * 22 20 19 33 33 H 1.09001 * 110.48559 * 257.57305 * 22 20 19 34 34 H 1.09001 * 109.88131 * 120.69934 * 23 13 12 35 35 H 1.08999 * 109.88833 * 241.71732 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.5756 -2.5529 -0.8544 11 6 0.4722 -2.6878 1.3280 12 6 0.3741 -4.2338 1.4117 13 7 1.6634 -4.7199 0.8874 14 6 2.2280 -5.9104 1.1710 15 8 3.2942 -6.2091 0.6760 16 6 1.5347 -6.8702 2.1033 17 1 1.3341 -6.4002 3.0661 18 6 0.2352 -7.4143 1.4651 19 7 0.1407 -8.8112 1.9053 20 6 1.3232 -9.2611 2.3595 21 8 1.5273 -10.3829 2.7728 22 6 2.3622 -8.1643 2.2808 23 6 2.2280 -3.6937 -0.0012 24 1 -0.4851 0.8400 0.0004 25 1 1.0327 -2.2824 2.1705 26 1 -0.5186 -2.2373 1.2676 27 1 -0.4477 -4.5980 0.7952 28 1 0.2420 -4.5496 2.4465 29 1 0.2961 -7.3647 0.3780 30 1 -0.6248 -6.8476 1.8218 31 1 -0.6698 -9.3429 1.8691 32 1 2.9431 -8.1223 3.2021 33 1 3.0164 -8.3195 1.4229 34 1 3.2020 -3.3761 0.3712 35 1 2.3292 -4.0923 -1.0106 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700855256.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:38 Heat of formation + Delta-G solvation = -97.527549 kcal Electronic energy + Delta-G solvation = -18602.142318 eV Core-core repulsion = 15598.632713 eV Total energy + Delta-G solvation = -3003.509605 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.81872 -40.41486 -38.43036 -37.27164 -34.94908 -32.81153 -31.86124 -30.04482 -28.76296 -26.84020 -24.78604 -23.05210 -21.67848 -21.43568 -20.08485 -18.82274 -18.40186 -18.12827 -17.07372 -16.77878 -16.49467 -16.08934 -15.70473 -15.14893 -14.62559 -14.49321 -14.41760 -14.16262 -14.09924 -13.53404 -13.06260 -13.03970 -12.90631 -12.66613 -12.50540 -12.32776 -12.26162 -11.54761 -11.33381 -11.12900 -10.93985 -10.85325 -10.48241 -10.18697 -9.55685 -8.14732 -6.22650 1.43234 1.46197 1.46551 1.54407 1.55868 2.01519 2.36540 2.45480 3.16626 3.20023 3.32538 3.64828 3.88542 4.07350 4.15454 4.37645 4.51340 4.53991 4.55933 4.58021 4.76893 4.84004 4.86019 4.92604 5.14303 5.33209 5.39640 5.62742 5.74119 5.82924 5.91657 5.94710 6.31671 6.65998 6.83596 7.12321 7.18467 7.44930 8.94277 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.056043 B = 0.004458 C = 0.004251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.497906 B = 6280.002432 C = 6584.780179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.025 3.975 3 Si 0.948 3.052 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.048 0.952 9 C 0.037 3.963 10 H 0.021 0.979 11 C -0.106 4.106 12 C 0.099 3.901 13 N -0.607 5.607 14 C 0.531 3.469 15 O -0.587 6.587 16 C -0.109 4.109 17 H 0.147 0.853 18 C 0.115 3.885 19 N -0.714 5.714 20 C 0.522 3.478 21 O -0.580 6.580 22 C -0.140 4.140 23 C 0.121 3.879 24 H 0.263 0.737 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.128 0.872 31 H 0.423 0.577 32 H 0.117 0.883 33 H 0.105 0.895 34 H 0.041 0.959 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.545 -10.515 5.211 12.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.175 4.175 3 Si 0.774 3.226 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.066 0.934 9 C 0.018 3.982 10 H 0.039 0.961 11 C -0.144 4.144 12 C -0.022 4.022 13 N -0.338 5.338 14 C 0.320 3.680 15 O -0.469 6.469 16 C -0.131 4.131 17 H 0.165 0.835 18 C -0.009 4.009 19 N -0.370 5.370 20 C 0.309 3.691 21 O -0.461 6.461 22 C -0.181 4.181 23 C -0.002 4.002 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.124 0.876 29 H 0.094 0.906 30 H 0.146 0.854 31 H 0.264 0.736 32 H 0.135 0.865 33 H 0.124 0.876 34 H 0.060 0.940 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.929 -11.110 5.178 12.871 hybrid contribution 0.325 1.073 -0.420 1.197 sum -3.604 -10.037 4.758 11.677 Atomic orbital electron populations 1.70002 1.06766 1.27459 1.50615 1.25550 0.95633 1.01766 0.94551 0.85716 0.78800 0.79975 0.78118 1.20449 1.20674 1.19791 1.21343 0.92794 0.91674 1.51594 0.93355 1.19638 0.92940 0.90747 0.94874 0.96080 1.22594 1.00754 0.92923 0.98152 1.22740 0.84283 0.94675 1.00516 1.48715 1.23020 1.15739 1.46333 1.20328 0.84804 0.81143 0.81744 1.90677 1.24293 1.76672 1.55216 1.22248 0.96026 0.94087 1.00709 0.83498 1.22185 0.97680 0.81176 0.99855 1.46144 1.12185 1.14815 1.63815 1.21006 0.85084 0.87731 0.75241 1.90730 1.82980 1.22873 1.49497 1.22263 0.97705 0.91395 1.06702 1.21988 0.97616 0.88395 0.92229 0.92783 0.93565 0.91253 0.89321 0.87632 0.90622 0.85357 0.73595 0.86471 0.87649 0.94024 0.93647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.04 12.50 21.45 0.27 -47.77 16 2 C 0.03 1.30 5.36 84.66 0.45 1.75 16 3 Si 0.95 41.26 29.54 68.60 2.03 43.29 16 4 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.54 -27.55 8.48 25.60 0.22 -27.33 16 8 H 0.05 2.52 7.53 -2.91 -0.02 2.50 16 9 C 0.04 1.66 2.77 -10.35 -0.03 1.63 16 10 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 11 C -0.11 -3.97 5.97 32.06 0.19 -3.78 16 12 C 0.10 2.53 5.93 86.93 0.52 3.05 16 13 N -0.61 -18.92 3.32 -811.36 -2.70 -21.62 16 14 C 0.53 15.54 7.09 87.65 0.62 16.16 16 15 O -0.59 -22.29 15.84 -3.04 -0.05 -22.34 16 16 C -0.11 -2.05 2.79 -10.42 -0.03 -2.08 16 17 H 0.15 1.95 7.73 -2.39 -0.02 1.93 16 18 C 0.12 1.60 6.66 86.90 0.58 2.18 16 19 N -0.71 -11.27 6.24 -459.48 -2.87 -14.14 16 20 C 0.52 12.17 8.43 87.90 0.74 12.91 16 21 O -0.58 -18.48 18.03 -3.02 -0.05 -18.53 16 22 C -0.14 -3.03 6.21 30.59 0.19 -2.84 16 23 C 0.12 4.81 6.45 86.73 0.56 5.37 16 24 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 25 H 0.05 1.85 8.05 -2.38 -0.02 1.83 16 26 H 0.07 2.79 7.78 -2.39 -0.02 2.77 16 27 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.11 1.86 7.39 -2.39 -0.02 1.84 16 29 H 0.08 1.18 7.89 -2.39 -0.02 1.16 16 30 H 0.13 0.96 7.94 -2.39 -0.02 0.94 16 31 H 0.42 4.99 8.96 -92.71 -0.83 4.16 16 32 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.11 2.73 6.97 -2.39 -0.02 2.71 16 34 H 0.04 1.82 7.63 -2.39 -0.02 1.80 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -67.55 291.68 0.91 -66.64 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 0.27 Total: 7.45 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 4.01 Total: 7.02 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -5.30 Total: -83.53 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -0.10 Total: -40.88 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -67.55 0.91 -66.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700855256.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.889 kcal (2) G-P(sol) polarization free energy of solvation -67.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds