Wall clock time and date at job start Mon Mar 30 2020 04:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41256 * 128.07531 * 2 1 4 4 N 1.30130 * 106.58892 * 180.25067 * 3 2 1 5 5 O 1.20883 * 111.98192 * 359.75783 * 4 3 2 6 6 C 1.34637 * 111.46889 * 0.02562 * 5 4 3 7 7 C 1.47511 * 126.94450 * 179.97438 * 6 5 4 8 8 O 1.21585 * 120.00351 * 173.80857 * 7 6 5 9 9 N 1.34778 * 119.99969 * 353.80623 * 7 6 5 10 10 C 1.46497 * 120.00125 * 4.44413 * 9 7 6 11 11 C 1.50705 * 109.47142 * 83.21210 * 10 9 7 12 12 H 1.07994 * 119.99771 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99599 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00369 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99884 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46989 * 59.99931 * 15 13 11 17 17 H 1.48498 * 109.47450 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46712 * 299.99816 * 15 13 11 19 19 C 1.46508 * 119.99899 * 184.43734 * 9 7 6 20 20 C 1.52997 * 109.47271 * 302.69715 * 19 9 7 21 21 C 1.52998 * 109.46612 * 62.69823 * 19 9 7 22 22 H 1.09001 * 109.47085 * 270.13792 * 1 2 3 23 23 H 1.09000 * 109.47356 * 30.14466 * 1 2 3 24 24 H 1.09004 * 109.47309 * 150.14136 * 1 2 3 25 25 H 1.07998 * 126.70586 * 0.02562 * 3 2 1 26 26 H 1.08998 * 109.47450 * 203.21723 * 10 9 7 27 27 H 1.09006 * 109.46797 * 323.21380 * 10 9 7 28 28 H 0.97001 * 120.00283 * 180.02562 * 14 13 11 29 29 H 1.09000 * 109.46656 * 182.69593 * 19 9 7 30 30 H 1.08997 * 109.47271 * 65.98637 * 20 19 9 31 31 H 1.08997 * 109.47149 * 185.98932 * 20 19 9 32 32 H 1.09002 * 109.47073 * 305.98284 * 20 19 9 33 33 H 1.09002 * 109.47397 * 64.86071 * 21 19 9 34 34 H 1.09008 * 109.46785 * 184.85814 * 21 19 9 35 35 H 1.08997 * 109.47372 * 304.85190 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3781 1.1120 0.0000 4 7 3.5890 0.6353 -0.0055 5 8 3.5994 -0.5734 -0.0040 6 6 2.3508 -1.0770 0.0023 7 6 1.9696 -2.5020 0.0052 8 8 0.8017 -2.8187 0.1246 9 7 2.9157 -3.4530 -0.1244 10 6 4.3309 -3.0770 -0.1703 11 6 4.8499 -2.9018 1.2337 12 1 4.1916 -3.0556 2.0758 13 6 6.1652 -2.5451 1.4428 14 7 6.9667 -2.3572 0.4172 15 14 6.8089 -2.3286 3.1830 16 1 6.6603 -3.6046 3.9280 17 1 8.2430 -1.9461 3.1365 18 1 6.0347 -1.2624 3.8680 19 6 2.5290 -4.8630 -0.2192 20 6 1.7097 -5.2511 1.0132 21 6 1.6879 -5.0773 -1.4791 22 1 -0.3633 0.0025 1.0277 23 1 -0.3634 0.8887 -0.5161 24 1 -0.3634 -0.8913 -0.5116 25 1 2.0946 2.1541 0.0004 26 1 4.8988 -3.8600 -0.6726 27 1 4.4404 -2.1407 -0.7177 28 1 7.8922 -2.1066 0.5643 29 1 3.4243 -5.4826 -0.2702 30 1 0.7649 -4.7077 1.0073 31 1 1.5126 -6.3230 0.9956 32 1 2.2681 -4.9992 1.9148 33 1 2.2985 -4.8836 -2.3610 34 1 1.3281 -6.1060 -1.5051 35 1 0.8377 -4.3954 -1.4688 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700880390.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:12 Heat of formation + Delta-G solvation = 9.333552 kcal Electronic energy + Delta-G solvation = -19583.059495 eV Core-core repulsion = 16584.183735 eV Total energy + Delta-G solvation = -2998.875760 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.80062 -40.97046 -37.33077 -35.45177 -35.10958 -33.76800 -32.42337 -29.33943 -28.71745 -27.99765 -25.48750 -24.40665 -23.73129 -22.17508 -20.61253 -18.86890 -18.49557 -18.04825 -17.09564 -16.86349 -16.35827 -15.89506 -15.51385 -14.70496 -14.58665 -14.43542 -14.13705 -14.02710 -13.96744 -13.52590 -13.35844 -13.21638 -12.82434 -12.73815 -12.65329 -12.20590 -12.14378 -12.09789 -11.82892 -11.67106 -11.27310 -10.75180 -10.55281 -10.35364 -9.50425 -8.17548 -6.29356 -0.06994 1.23131 1.38031 1.40003 1.46469 1.81918 2.08733 2.33840 2.47540 3.14661 3.37243 3.55052 3.80742 4.08455 4.18966 4.27026 4.38568 4.41197 4.68409 4.81778 4.83336 4.91059 4.97533 5.01348 5.03228 5.04978 5.25904 5.29822 5.36648 5.44725 5.68721 5.85790 6.06780 6.40605 6.77136 7.05311 7.30273 7.40374 8.88921 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.016154 B = 0.010811 C = 0.007481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.952130 B = 2589.216580 C = 3741.732127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.139 4.139 3 C -0.012 4.012 4 N -0.389 5.389 5 O 0.125 5.875 6 C -0.104 4.104 7 C 0.598 3.402 8 O -0.541 6.541 9 N -0.582 5.582 10 C 0.246 3.754 11 C -0.535 4.535 12 H 0.047 0.953 13 C 0.028 3.972 14 N -0.914 5.914 15 Si 0.946 3.054 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.281 1.281 19 C 0.135 3.865 20 C -0.157 4.157 21 C -0.154 4.154 22 H 0.083 0.917 23 H 0.103 0.897 24 H 0.072 0.928 25 H 0.235 0.765 26 H 0.031 0.969 27 H 0.032 0.968 28 H 0.266 0.734 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.036 0.964 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.409 0.676 -2.085 11.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.144 4.144 3 C -0.189 4.189 4 N -0.091 5.091 5 O 0.056 5.944 6 C -0.169 4.169 7 C 0.384 3.616 8 O -0.423 6.423 9 N -0.311 5.311 10 C 0.126 3.874 11 C -0.574 4.574 12 H 0.065 0.935 13 C -0.172 4.172 14 N -0.553 5.553 15 Si 0.772 3.228 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.207 1.207 19 C 0.033 3.967 20 C -0.215 4.215 21 C -0.212 4.212 22 H 0.102 0.898 23 H 0.122 0.878 24 H 0.091 0.909 25 H 0.252 0.748 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.574 1.063 -2.096 10.832 hybrid contribution 0.366 0.165 0.934 1.016 sum -10.209 1.228 -1.163 10.348 Atomic orbital electron populations 1.20293 0.84302 1.04447 1.03746 1.22067 1.00160 0.89620 1.02515 1.25584 0.86829 1.03301 1.03236 1.73784 1.25124 0.92927 1.17261 1.85480 1.28010 1.14562 1.66382 1.24413 0.85207 0.97168 1.10161 1.16695 0.85185 0.82133 0.77554 1.90649 1.17753 1.80922 1.52935 1.48339 1.07892 1.06763 1.68128 1.19326 0.75356 0.96030 0.96731 1.21437 0.95707 1.47786 0.92458 0.93495 1.25500 0.96943 0.94617 1.00178 1.69985 1.06404 1.47406 1.31500 0.85798 0.77399 0.78678 0.80946 1.19134 1.20474 1.20731 1.21275 0.98776 0.79897 0.96791 1.22118 1.00686 1.02456 0.96197 1.22093 0.99915 1.03426 0.95781 0.89819 0.87828 0.90888 0.74840 0.95134 0.95046 0.92511 0.89239 0.91404 0.89458 0.94506 0.92907 0.89019 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.74 9.91 71.24 0.71 -1.04 16 2 C -0.14 -4.62 6.36 -19.45 -0.12 -4.74 16 3 C -0.01 -0.39 12.14 85.69 1.04 0.65 16 4 N -0.39 -16.45 12.04 -58.56 -0.71 -17.16 16 5 O 0.12 5.87 7.38 65.89 0.49 6.36 16 6 C -0.10 -4.34 6.87 24.39 0.17 -4.17 16 7 C 0.60 25.11 6.99 86.69 0.61 25.71 16 8 O -0.54 -21.79 11.51 -3.98 -0.05 -21.84 16 9 N -0.58 -24.65 2.43 -805.89 -1.96 -26.61 16 10 C 0.25 12.22 4.76 85.64 0.41 12.63 16 11 C -0.54 -28.90 8.51 25.60 0.22 -28.69 16 12 H 0.05 2.59 7.81 -2.91 -0.02 2.57 16 13 C 0.03 1.56 5.46 84.65 0.46 2.02 16 14 N -0.91 -52.35 13.29 21.45 0.28 -52.07 16 15 Si 0.95 44.00 29.54 68.60 2.03 46.03 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 18 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 19 C 0.13 4.69 3.27 44.99 0.15 4.83 16 20 C -0.16 -5.07 8.95 71.98 0.64 -4.43 16 21 C -0.15 -4.46 9.22 71.98 0.66 -3.80 16 22 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.07 1.99 6.87 -2.38 -0.02 1.97 16 25 H 0.24 4.85 8.06 -2.91 -0.02 4.83 16 26 H 0.03 1.56 7.80 -2.39 -0.02 1.54 16 27 H 0.03 1.70 5.42 -2.38 -0.01 1.69 16 28 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 29 H 0.09 3.07 7.73 -2.39 -0.02 3.05 16 30 H 0.07 2.33 6.06 -2.39 -0.01 2.32 16 31 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.06 1.82 6.41 -2.39 -0.02 1.80 16 Total: -1.00 -63.87 293.27 6.12 -57.75 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 1.09 Total: 8.56 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 4.94 Total: -1.02 kcal Atomic # 7 Polarization: -93.46 SS G_CDS: -2.38 Total: -95.84 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: 0.44 Total: -15.48 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -63.87 6.12 -57.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700880390.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.079 kcal (2) G-P(sol) polarization free energy of solvation -63.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds