Wall clock time and date at job start Mon Mar 30 2020 04:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41265 * 128.07471 * 2 1 4 4 N 1.30135 * 106.58876 * 180.24629 * 3 2 1 5 5 O 1.20884 * 111.97991 * 359.76250 * 4 3 2 6 6 C 1.34644 * 111.46918 * 0.02562 * 5 4 3 7 7 C 1.47516 * 126.94451 * 179.97438 * 6 5 4 8 8 O 1.21576 * 120.00183 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99812 * 0.02562 * 7 6 5 10 10 C 1.46506 * 120.00072 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.46817 * 299.99814 * 11 10 9 13 13 C 1.52997 * 109.47232 * 60.00053 * 11 10 9 14 14 C 1.50696 * 109.47242 * 180.02562 * 11 10 9 15 15 H 1.08004 * 119.99967 * 359.97438 * 14 11 10 16 16 C 1.37875 * 120.00542 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99408 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00405 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.47011 * 90.00022 * 18 16 14 20 20 H 1.48498 * 109.47118 * 209.99881 * 18 16 14 21 21 H 1.48499 * 109.47134 * 330.00401 * 18 16 14 22 22 H 1.09005 * 109.47185 * 270.14371 * 1 2 3 23 23 H 1.09001 * 109.46955 * 30.14053 * 1 2 3 24 24 H 1.08991 * 109.47189 * 150.14206 * 1 2 3 25 25 H 1.07998 * 126.70770 * 0.02562 * 3 2 1 26 26 H 0.97001 * 120.00676 * 359.97438 * 9 7 6 27 27 H 1.09001 * 109.47060 * 300.00359 * 10 9 7 28 28 H 1.09004 * 109.47073 * 59.99848 * 10 9 7 29 29 H 1.09002 * 109.47070 * 60.00180 * 12 11 10 30 30 H 1.09000 * 109.46986 * 180.02562 * 12 11 10 31 31 H 1.08996 * 109.47407 * 299.99780 * 12 11 10 32 32 H 1.08998 * 109.47624 * 59.99682 * 13 11 10 33 33 H 1.09000 * 109.47140 * 180.02562 * 13 11 10 34 34 H 1.09002 * 109.46777 * 299.99578 * 13 11 10 35 35 H 0.96999 * 119.99910 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3781 1.1120 0.0000 4 7 3.5890 0.6354 -0.0054 5 8 3.5995 -0.5734 -0.0040 6 6 2.3508 -1.0770 0.0022 7 6 1.9695 -2.5020 0.0051 8 8 0.7952 -2.8171 0.0103 9 7 2.9228 -3.4546 0.0020 10 6 2.5442 -4.8699 0.0043 11 6 3.8058 -5.7354 0.0005 12 6 4.6300 -5.4301 -1.2518 13 6 4.6386 -5.4284 1.2467 14 6 3.4163 -7.1912 0.0023 15 1 2.3732 -7.4711 0.0061 16 6 4.3915 -8.1658 -0.0011 17 7 5.6617 -7.8250 -0.0052 18 14 3.9086 -9.9704 0.0018 19 1 3.7752 -10.4493 -1.3975 20 1 4.9547 -10.7616 0.6981 21 1 2.6121 -10.1347 0.7069 22 1 -0.3634 0.0026 1.0277 23 1 -0.3633 0.8887 -0.5160 24 1 -0.3633 -0.8912 -0.5116 25 1 2.0947 2.1542 0.0004 26 1 3.8597 -3.2034 -0.0026 27 1 1.9573 -5.0876 0.8966 28 1 1.9504 -5.0886 -0.8833 29 1 4.9117 -4.3771 -1.2535 30 1 5.5286 -6.0470 -1.2548 31 1 4.0367 -5.6489 -2.1396 32 1 4.0515 -5.6458 2.1389 33 1 5.5377 -6.0447 1.2438 34 1 4.9204 -4.3754 1.2449 35 1 6.3478 -8.5106 -0.0072 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700882251.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:10 Heat of formation + Delta-G solvation = -1.880678 kcal Electronic energy + Delta-G solvation = -18626.495827 eV Core-core repulsion = 15627.133781 eV Total energy + Delta-G solvation = -2999.362045 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.02452 -40.80826 -38.21937 -35.85625 -35.02911 -33.48310 -32.58318 -29.43218 -27.56138 -27.52589 -26.93789 -24.71500 -23.23036 -21.68568 -20.64612 -19.75204 -18.80545 -17.82593 -16.98290 -16.86002 -16.44444 -16.26173 -15.53146 -14.79950 -14.70496 -14.58621 -14.17647 -14.10920 -14.00233 -13.58458 -13.20235 -13.09082 -12.68750 -12.58063 -12.28127 -12.25477 -12.12144 -11.48588 -11.47264 -11.42247 -11.14476 -10.69748 -10.57654 -10.38103 -10.02414 -8.00219 -6.16240 -0.28499 1.08282 1.45158 1.48077 1.54906 1.58196 1.91180 2.26224 2.50108 3.20260 3.23934 3.60226 3.74430 3.99430 4.30682 4.42338 4.51022 4.71301 4.77024 4.82970 4.93417 4.97479 5.06316 5.09690 5.19957 5.22686 5.33745 5.51930 5.67342 5.69414 6.14533 6.21209 6.36292 6.43699 6.86803 6.93841 7.03593 7.51756 8.98874 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.044260 B = 0.004809 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.469317 B = 5821.286038 C = 6257.385510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.120 4.120 3 C 0.003 3.997 4 N -0.365 5.365 5 O 0.097 5.903 6 C -0.106 4.106 7 C 0.597 3.403 8 O -0.546 6.546 9 N -0.696 5.696 10 C 0.146 3.854 11 C 0.050 3.950 12 C -0.124 4.124 13 C -0.123 4.123 14 C -0.526 4.526 15 H 0.050 0.950 16 C 0.027 3.973 17 N -0.901 5.901 18 Si 0.946 3.054 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.273 1.273 22 H 0.088 0.912 23 H 0.106 0.894 24 H 0.069 0.931 25 H 0.240 0.760 26 H 0.411 0.589 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.033 0.967 30 H 0.062 0.938 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.062 0.938 34 H 0.033 0.967 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.970 15.609 0.005 16.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C -0.175 4.175 4 N -0.068 5.068 5 O 0.029 5.971 6 C -0.171 4.171 7 C 0.381 3.619 8 O -0.425 6.425 9 N -0.346 5.346 10 C 0.023 3.977 11 C 0.049 3.951 12 C -0.181 4.181 13 C -0.181 4.181 14 C -0.564 4.564 15 H 0.068 0.932 16 C -0.172 4.172 17 N -0.539 5.539 18 Si 0.773 3.227 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.198 1.198 22 H 0.107 0.893 23 H 0.124 0.876 24 H 0.088 0.912 25 H 0.256 0.744 26 H 0.248 0.752 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.389 15.797 0.006 16.691 hybrid contribution -0.272 -1.301 -0.001 1.329 sum -5.660 14.496 0.005 15.562 Atomic orbital electron populations 1.20398 0.84895 1.04644 1.04112 1.22052 1.00052 0.89952 1.00400 1.25630 0.86456 1.03432 1.01942 1.73758 1.24538 0.91121 1.17371 1.84964 1.28210 1.15871 1.68097 1.24009 0.85363 0.95963 1.11793 1.16750 0.85538 0.82196 0.77369 1.90793 1.18132 1.81245 1.52334 1.46128 1.09986 1.06843 1.71672 1.21476 0.98506 0.77544 1.00177 1.18381 0.90464 0.92887 0.93360 1.21704 1.01373 0.98055 0.97016 1.21699 1.01355 0.98056 0.97020 1.21251 0.92699 0.91310 1.51166 0.93188 1.25468 0.95018 1.02039 0.94715 1.69922 0.99705 1.33594 1.50698 0.85740 0.77840 0.81165 0.77941 1.20565 1.21125 1.19824 0.89323 0.87567 0.91218 0.74405 0.75168 0.92972 0.92955 0.94822 0.91904 0.95898 0.95877 0.91914 0.94823 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.49 9.95 71.23 0.71 -0.78 16 2 C -0.12 -2.68 6.37 -19.45 -0.12 -2.81 16 3 C 0.00 0.06 12.14 85.69 1.04 1.10 16 4 N -0.36 -9.25 12.04 -58.54 -0.71 -9.95 16 5 O 0.10 2.72 11.04 65.81 0.73 3.45 16 6 C -0.11 -2.99 7.29 24.39 0.18 -2.81 16 7 C 0.60 20.05 7.82 86.69 0.68 20.73 16 8 O -0.55 -20.69 15.11 -3.95 -0.06 -20.75 16 9 N -0.70 -24.07 4.96 -466.29 -2.31 -26.39 16 10 C 0.15 5.92 4.50 86.38 0.39 6.31 16 11 C 0.05 2.26 0.50 -52.93 -0.03 2.23 16 12 C -0.12 -5.48 8.08 71.98 0.58 -4.89 16 13 C -0.12 -5.47 8.08 71.98 0.58 -4.88 16 14 C -0.53 -27.10 8.01 25.60 0.21 -26.89 16 15 H 0.05 2.60 7.74 -2.91 -0.02 2.57 16 16 C 0.03 1.42 5.15 84.65 0.44 1.85 16 17 N -0.90 -47.79 9.35 21.45 0.20 -47.59 16 18 Si 0.95 41.99 29.54 68.60 2.03 44.02 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 22 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 23 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.07 1.59 6.73 -2.39 -0.02 1.57 16 25 H 0.24 2.15 8.06 -2.91 -0.02 2.13 16 26 H 0.41 13.18 5.99 -92.71 -0.56 12.63 16 27 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 29 H 0.03 1.27 6.86 -2.39 -0.02 1.25 16 30 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 31 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 34 H 0.03 1.27 6.86 -2.39 -0.02 1.25 16 35 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 Total: -1.00 -58.82 292.81 5.08 -53.74 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.55 Total: 14.31 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 4.65 Total: -10.84 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -2.82 Total: -83.93 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: 0.67 Total: -17.30 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -58.82 5.08 -53.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700882251.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.860 kcal (2) G-P(sol) polarization free energy of solvation -58.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds