Wall clock time and date at job start Mon Mar 30 2020 04:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50709 * 119.99703 * 2 1 4 4 C 1.52996 * 109.47137 * 124.99916 * 3 2 1 5 5 H 1.09001 * 110.88725 * 302.57943 * 4 3 2 6 6 C 1.55154 * 111.00595 * 178.64998 * 4 3 2 7 7 C 1.54315 * 102.86480 * 206.22821 * 6 4 3 8 8 N 1.47031 * 107.27358 * 22.52621 * 7 6 4 9 9 C 1.34773 * 125.64612 * 180.96318 * 8 7 6 10 10 O 1.21443 * 119.99990 * 179.69557 * 9 8 7 11 11 C 1.48835 * 120.00277 * 359.42214 * 9 8 7 12 12 O 1.21503 * 119.99715 * 0.27324 * 11 9 8 13 13 N 1.34769 * 120.00097 * 180.27494 * 11 9 8 14 14 C 1.36126 * 119.99952 * 180.02562 * 13 11 9 15 15 H 1.08002 * 119.99685 * 359.97438 * 14 13 11 16 16 C 1.39582 * 119.99932 * 179.97438 * 14 13 11 17 17 N 1.31014 * 120.00244 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00042 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46793 * 59.99939 * 18 16 14 20 20 H 1.48494 * 109.47228 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47000 * 299.99846 * 18 16 14 22 22 C 1.47422 * 108.70109 * 0.70431 * 8 7 6 23 23 H 1.08005 * 119.99391 * 179.97438 * 1 2 3 24 24 H 1.08000 * 120.00371 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.00648 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.46885 * 5.00124 * 3 2 1 27 27 H 1.09001 * 109.47001 * 245.00420 * 3 2 1 28 28 H 1.08999 * 110.71711 * 324.79068 * 6 4 3 29 29 H 1.09001 * 110.71772 * 88.06481 * 6 4 3 30 30 H 1.08992 * 109.98718 * 263.05117 * 7 6 4 31 31 H 1.08995 * 109.77166 * 141.88603 * 7 6 4 32 32 H 0.97000 * 120.00347 * 359.97438 * 13 11 9 33 33 H 0.96999 * 120.00097 * 180.02562 * 17 16 14 34 34 H 1.09005 * 110.36722 * 94.93976 * 22 8 7 35 35 H 1.08999 * 110.36620 * 217.25933 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3333 1.1816 5 1 2.5053 1.1917 2.1237 6 6 3.8551 2.6502 1.1962 7 6 5.1475 2.2420 1.9340 8 7 5.2833 0.7839 1.8025 9 6 6.2752 0.0370 2.3266 10 8 6.2836 -1.1657 2.1584 11 6 7.3637 0.6868 3.1064 12 8 7.3554 1.8901 3.2747 13 7 8.3586 -0.0594 3.6257 14 6 9.3538 0.5349 4.3394 15 1 9.3464 1.6045 4.4890 16 6 10.3839 -0.2380 4.8777 17 7 10.3926 -1.5355 4.6966 18 14 11.7501 0.5776 5.8565 19 1 11.1691 1.2714 7.0339 20 1 12.7136 -0.4545 6.3163 21 1 12.4531 1.5642 4.9976 22 6 4.1514 0.2735 1.0078 23 1 -0.5399 -0.9354 -0.0004 24 1 -0.5401 0.9353 0.0004 25 1 1.8501 -0.9353 -0.0004 26 1 1.3585 2.1317 0.0896 27 1 2.6212 1.4028 -0.9314 28 1 4.0741 2.9794 0.1804 29 1 3.3272 3.4272 1.7492 30 1 5.0771 2.5142 2.9871 31 1 6.0047 2.7368 1.4775 32 1 8.3651 -1.0200 3.4917 33 1 11.1083 -2.0727 5.0711 34 1 4.4329 0.1877 -0.0418 35 1 3.8219 -0.6914 1.3931 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705954232.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:33 Heat of formation + Delta-G solvation = -56.181045 kcal Electronic energy + Delta-G solvation = -18223.568132 eV Core-core repulsion = 15221.851446 eV Total energy + Delta-G solvation = -3001.716686 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.88082 -38.11132 -36.83341 -35.05926 -34.11817 -31.64550 -31.20874 -29.15822 -26.76432 -25.46458 -23.45226 -21.69547 -20.63083 -19.66204 -18.84268 -18.09811 -16.74425 -16.23062 -15.86969 -15.16112 -14.81941 -14.33135 -13.99780 -13.79496 -13.63572 -13.36584 -13.11422 -12.58644 -12.30569 -12.03981 -11.88880 -11.75684 -11.72445 -11.17015 -10.94745 -10.71341 -10.63464 -10.54466 -10.39958 -10.21560 -9.68860 -9.49207 -8.29649 -8.18808 -8.16629 -6.65149 -3.97673 2.10792 2.47107 3.14803 3.17998 3.18106 3.31192 4.05479 4.28110 4.35981 4.67991 4.76838 4.88703 5.02444 5.08743 5.20459 5.30837 5.41621 5.46051 5.66249 5.70500 5.76290 5.81889 5.91702 6.07166 6.16277 6.26819 6.34127 6.46221 6.59208 6.70855 7.32332 7.74710 7.85291 8.31256 8.60727 8.97549 9.33964 9.86970 10.49846 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.052760 B = 0.004194 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.573058 B = 6675.136941 C = 7105.841318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.082 4.082 4 C -0.099 4.099 5 H 0.086 0.914 6 C -0.132 4.132 7 C 0.118 3.882 8 N -0.604 5.604 9 C 0.527 3.473 10 O -0.548 6.548 11 C 0.398 3.602 12 O -0.591 6.591 13 N -0.500 5.500 14 C -0.306 4.306 15 H 0.112 0.888 16 C 0.031 3.969 17 N -0.870 5.870 18 Si 0.940 3.060 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.269 1.269 22 C 0.111 3.889 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.110 0.890 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.404 0.596 33 H 0.281 0.719 34 H 0.066 0.934 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.111 4.781 -7.434 16.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.169 4.169 3 C -0.119 4.119 4 C -0.118 4.118 5 H 0.104 0.896 6 C -0.170 4.170 7 C -0.005 4.005 8 N -0.339 5.339 9 C 0.314 3.686 10 O -0.425 6.425 11 C 0.182 3.818 12 O -0.480 6.480 13 N -0.135 5.135 14 C -0.437 4.437 15 H 0.130 0.870 16 C -0.176 4.176 17 N -0.508 5.508 18 Si 0.765 3.235 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.194 1.194 22 C -0.012 4.012 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.128 0.872 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.240 0.760 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.890 4.695 -7.315 16.386 hybrid contribution 0.639 -0.341 0.381 0.819 sum -13.251 4.354 -6.934 15.576 Atomic orbital electron populations 1.23829 0.95948 1.01683 1.02143 1.23042 0.96046 0.98806 0.98970 1.20717 0.97686 0.95473 0.98040 1.22358 0.94890 0.95328 0.99206 0.89611 1.22840 0.95814 0.97048 1.01328 1.22005 0.96994 0.79973 1.01512 1.48148 1.24234 1.08748 1.52791 1.20505 0.82404 0.86171 0.79561 1.90689 1.76918 1.14554 1.60369 1.18861 0.85990 0.87665 0.89270 1.90563 1.78485 1.13674 1.65237 1.41538 1.19033 1.10865 1.42051 1.19820 1.00488 0.95269 1.28079 0.87042 1.25579 0.99148 0.95272 0.97600 1.69478 1.33726 1.05005 1.42614 0.85780 0.79380 0.78638 0.79690 1.19398 1.20611 1.19395 1.22262 0.85478 0.97792 0.95633 0.88660 0.88723 0.87171 0.91001 0.90553 0.90679 0.90159 0.90501 0.90586 0.76038 0.90891 0.91627 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.62 14.32 29.01 0.42 -1.21 16 2 C -0.15 -1.35 9.16 -36.02 -0.33 -1.68 16 3 C -0.08 -0.70 5.18 -27.88 -0.14 -0.85 16 4 C -0.10 -1.07 3.06 -88.47 -0.27 -1.34 16 5 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 6 C -0.13 -1.45 6.42 -24.90 -0.16 -1.61 16 7 C 0.12 1.88 5.48 -3.06 -0.02 1.87 16 8 N -0.60 -11.14 3.33 -171.26 -0.57 -11.71 16 9 C 0.53 12.08 7.89 -11.88 -0.09 11.98 16 10 O -0.55 -13.49 16.72 5.42 0.09 -13.40 16 11 C 0.40 10.24 7.78 -11.88 -0.09 10.15 16 12 O -0.59 -15.72 13.67 5.36 0.07 -15.64 16 13 N -0.50 -13.63 5.25 -11.59 -0.06 -13.69 16 14 C -0.31 -8.50 9.67 -15.14 -0.15 -8.65 16 15 H 0.11 3.14 7.15 -52.49 -0.38 2.76 16 16 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 17 N -0.87 -23.57 13.03 55.53 0.72 -22.85 16 18 Si 0.94 20.21 29.56 -169.99 -5.02 15.18 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 C 0.11 1.59 5.81 -2.53 -0.01 1.57 16 23 H 0.10 0.70 8.06 -52.48 -0.42 0.28 16 24 H 0.09 0.68 7.84 -52.49 -0.41 0.27 16 25 H 0.11 1.02 7.88 -52.49 -0.41 0.61 16 26 H 0.07 0.54 7.79 -51.93 -0.40 0.14 16 27 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 28 H 0.07 0.73 8.04 -51.93 -0.42 0.31 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.33 7.59 -51.93 -0.39 0.94 16 31 H 0.08 1.31 7.67 -51.93 -0.40 0.91 16 32 H 0.40 11.14 7.35 -40.82 -0.30 10.84 16 33 H 0.28 7.06 8.30 -40.82 -0.34 6.72 16 34 H 0.07 0.88 8.00 -51.93 -0.42 0.47 16 35 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 LS Contribution 301.25 15.07 4.54 4.54 Total: -1.00 -30.74 301.25 -5.95 -36.69 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -4.77 Total: 9.93 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: -0.95 Total: 10.94 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.09 Total: -48.24 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: 0.16 Total: -29.04 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.74 -5.95 -36.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705954232.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.496 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds