Wall clock time and date at job start Mon Mar 30 2020 04:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42900 * 109.52002 * 243.51618 * 3 2 1 5 5 C 1.53115 * 109.52223 * 123.32853 * 3 2 1 6 6 C 1.53035 * 109.27865 * 297.74528 * 5 3 2 7 7 N 1.46843 * 109.52473 * 300.82070 * 6 5 3 8 8 C 1.46897 * 111.00216 * 185.83654 * 7 6 5 9 9 C 1.50697 * 109.47249 * 169.43405 * 8 7 6 10 10 O 1.21296 * 120.00164 * 353.78994 * 9 8 7 11 11 N 1.34774 * 120.00171 * 173.78433 * 9 8 7 12 12 C 1.37101 * 120.00360 * 180.02562 * 11 9 8 13 13 H 1.08001 * 119.99500 * 359.97438 * 12 11 9 14 14 C 1.38949 * 120.00231 * 179.97438 * 12 11 9 15 15 N 1.31406 * 120.00141 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99913 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47460 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47190 * 120.00071 * 16 14 12 19 19 H 1.48503 * 109.47425 * 240.00408 * 16 14 12 20 20 C 1.46851 * 111.19462 * 61.74088 * 7 6 5 21 21 C 1.53035 * 109.52477 * 298.25721 * 20 7 6 22 22 H 4.38547 * 5.43919 * 180.02562 * 4 1 2 23 23 H 0.96701 * 114.00445 * 300.00118 * 4 3 2 24 24 H 1.09003 * 109.50346 * 57.68882 * 5 3 2 25 25 H 1.09006 * 109.50560 * 177.80379 * 5 3 2 26 26 H 1.09004 * 109.46380 * 180.80504 * 6 5 3 27 27 H 1.09001 * 109.45935 * 60.83831 * 6 5 3 28 28 H 1.09000 * 109.47324 * 289.43518 * 8 7 6 29 29 H 1.09001 * 109.47011 * 49.43883 * 8 7 6 30 30 H 0.97003 * 120.00374 * 359.97438 * 11 9 8 31 31 H 0.96993 * 120.00253 * 179.97438 * 15 14 12 32 32 H 1.09007 * 109.46088 * 178.23971 * 20 7 6 33 33 H 1.08997 * 109.46298 * 58.27581 * 20 7 6 34 34 H 1.09002 * 109.50376 * 299.24167 * 21 20 7 35 35 H 1.09001 * 109.50208 * 179.12410 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1232 0.6015 1.2055 5 6 3.1573 0.7938 -1.2058 6 6 2.6926 0.1105 -2.4939 7 7 3.2091 -1.2635 -2.5344 8 6 2.8993 -1.9047 -3.8193 9 6 3.6577 -3.2023 -3.9289 10 8 4.4693 -3.5041 -3.0795 11 7 3.4342 -4.0275 -4.9707 12 6 4.1237 -5.2083 -5.0702 13 1 4.8464 -5.4769 -4.3139 14 6 3.8928 -6.0594 -6.1441 15 7 3.0139 -5.7323 -7.0645 16 14 4.8329 -7.6678 -6.2799 17 1 5.7571 -7.8002 -5.1250 18 1 3.8751 -8.8026 -6.2794 19 1 5.6137 -7.6797 -7.5431 20 6 2.6936 -2.0578 -1.4120 21 6 3.1583 -1.4393 -0.0917 22 1 -1.0501 -0.0003 -0.0002 23 1 2.8379 1.5173 1.3283 24 1 2.7608 1.8085 -1.1686 25 1 4.2466 0.8271 -1.1841 26 1 3.0671 0.6648 -3.3545 27 1 1.6031 0.0900 -2.5214 28 1 1.8291 -2.1033 -3.8776 29 1 3.1911 -1.2433 -4.6351 30 1 2.7848 -3.7865 -5.6499 31 1 2.8530 -6.3262 -7.8143 32 1 3.0688 -3.0785 -1.4869 33 1 1.6042 -2.0683 -1.4446 34 1 4.2477 -1.4411 -0.0524 35 1 2.7626 -2.0202 0.7415 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708115866.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:22 Heat of formation + Delta-G solvation = -24.253268 kcal Electronic energy + Delta-G solvation = -18535.880013 eV Core-core repulsion = 15535.547819 eV Total energy + Delta-G solvation = -3000.332194 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.79646 -38.12069 -36.22499 -33.89987 -33.09888 -31.46244 -31.05946 -30.83762 -27.15334 -24.62980 -23.26437 -22.94844 -20.81096 -19.17079 -18.26986 -17.84066 -16.82652 -15.95893 -15.71362 -15.00814 -14.79152 -14.68892 -14.22061 -13.84065 -13.66033 -13.43900 -12.94304 -12.34214 -12.05679 -11.65991 -11.52257 -11.45461 -11.16498 -11.14060 -11.06334 -10.81145 -10.65759 -10.52472 -10.32924 -10.20699 -9.87954 -9.46255 -8.42623 -7.95697 -7.84255 -6.40214 -3.80827 2.59260 2.66922 3.17557 3.28088 3.35415 3.91979 3.94328 4.11993 4.16372 4.27145 4.70940 4.85047 5.05795 5.22281 5.28150 5.43667 5.50639 5.59085 5.69510 5.74324 5.80287 5.84130 5.97701 6.01275 6.14330 6.29032 6.36980 6.43367 7.28236 7.39212 7.43753 7.44306 7.57083 8.08630 8.63853 9.20164 9.56618 10.08519 10.77757 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.044441 B = 0.004424 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.903956 B = 6327.600316 C = 6461.359154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.205 4.205 3 C 0.240 3.760 4 O -0.547 6.547 5 C -0.132 4.132 6 C 0.057 3.943 7 N -0.514 5.514 8 C 0.047 3.953 9 C 0.444 3.556 10 O -0.575 6.575 11 N -0.566 5.566 12 C -0.297 4.297 13 H 0.104 0.896 14 C 0.022 3.978 15 N -0.903 5.903 16 Si 0.929 3.071 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.058 3.942 21 C -0.094 4.094 22 H 0.217 0.783 23 H 0.376 0.624 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.032 0.968 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.392 0.608 31 H 0.270 0.730 32 H 0.105 0.895 33 H 0.026 0.974 34 H 0.091 0.909 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.309 12.911 9.114 16.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.205 4.205 3 C 0.199 3.801 4 O -0.353 6.353 5 C -0.170 4.170 6 C -0.072 4.072 7 N -0.238 5.238 8 C -0.085 4.085 9 C 0.229 3.771 10 O -0.459 6.459 11 N -0.203 5.203 12 C -0.427 4.427 13 H 0.122 0.878 14 C -0.180 4.180 15 N -0.544 5.544 16 Si 0.756 3.244 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.069 4.069 21 C -0.131 4.131 22 H 0.234 0.766 23 H 0.223 0.777 24 H 0.087 0.913 25 H 0.110 0.890 26 H 0.097 0.903 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.225 0.775 31 H 0.080 0.920 32 H 0.123 0.877 33 H 0.044 0.956 34 H 0.110 0.890 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.014 12.026 9.637 15.925 hybrid contribution -1.505 -0.087 -0.847 1.729 sum -5.519 11.940 8.790 15.820 Atomic orbital electron populations 1.25004 0.95925 1.00208 0.99742 1.23966 0.95150 1.00726 1.00677 1.18281 0.81590 0.95379 0.84819 1.86647 1.75920 1.31365 1.41328 1.22226 1.03085 0.98079 0.93651 1.22047 0.97201 0.90300 0.97631 1.61530 1.59443 1.00943 1.01910 1.21844 0.98056 0.96534 0.92038 1.19744 0.87006 0.85859 0.84503 1.90509 1.37781 1.75884 1.41719 1.41890 1.37925 1.18382 1.22084 1.19754 1.19616 0.94897 1.08423 0.87839 1.25251 0.97275 0.99923 0.95518 1.69616 1.34101 1.38353 1.12370 0.85810 0.79192 0.81067 0.78337 1.19201 1.20814 1.20765 1.22167 0.96248 0.99660 0.88844 1.21508 1.02948 0.91038 0.97649 0.76609 0.77683 0.91253 0.89012 0.90280 0.94974 0.93605 0.89195 0.77534 0.91966 0.87675 0.95589 0.89048 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.11 19.25 29.55 0.57 -1.54 16 2 C -0.20 -2.59 9.85 -37.12 -0.37 -2.96 16 3 C 0.24 3.08 1.10 -93.29 -0.10 2.98 16 4 O -0.55 -6.51 12.96 -35.23 -0.46 -6.97 16 5 C -0.13 -1.55 5.20 -26.65 -0.14 -1.69 16 6 C 0.06 0.75 5.25 -3.84 -0.02 0.73 16 7 N -0.51 -8.72 4.35 -236.12 -1.03 -9.75 16 8 C 0.05 0.84 5.45 -4.98 -0.03 0.82 16 9 C 0.44 10.49 7.31 -10.99 -0.08 10.41 16 10 O -0.58 -15.49 14.28 5.54 0.08 -15.41 16 11 N -0.57 -14.37 5.29 -10.96 -0.06 -14.43 16 12 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 13 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 14 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 15 N -0.90 -24.63 13.05 55.50 0.72 -23.90 16 16 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 C 0.06 0.99 4.91 -3.83 -0.02 0.98 16 21 C -0.09 -1.41 5.23 -26.65 -0.14 -1.55 16 22 H 0.22 1.60 7.80 -54.08 -0.42 1.18 16 23 H 0.38 2.87 9.03 45.56 0.41 3.28 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.08 0.95 8.01 -51.93 -0.42 0.54 16 27 H 0.03 0.42 7.31 -51.93 -0.38 0.04 16 28 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 29 H 0.09 1.46 7.98 -51.93 -0.41 1.05 16 30 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 31 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.11 2.12 6.05 -51.93 -0.31 1.81 16 33 H 0.03 0.43 7.31 -51.93 -0.38 0.05 16 34 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 297.08 15.07 4.48 4.48 Total: -1.00 -32.09 297.08 -5.71 -37.80 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -3.86 Total: 11.88 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -0.56 Total: 0.22 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: -0.36 Total: -48.08 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.38 Total: -22.38 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.09 -5.71 -37.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708115866.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.549 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds