Wall clock time and date at job start Mon Mar 30 2020 04:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42900 * 109.52002 * 243.51618 * 3 2 1 5 5 C 1.53115 * 109.52223 * 123.32853 * 3 2 1 6 6 C 1.53035 * 109.27865 * 297.74528 * 5 3 2 7 7 N 1.46843 * 109.52473 * 300.82070 * 6 5 3 8 8 C 1.46897 * 111.00216 * 185.83654 * 7 6 5 9 9 C 1.50697 * 109.47249 * 169.43405 * 8 7 6 10 10 O 1.21296 * 120.00164 * 353.78994 * 9 8 7 11 11 N 1.34774 * 120.00171 * 173.78433 * 9 8 7 12 12 C 1.37101 * 120.00360 * 180.02562 * 11 9 8 13 13 H 1.08001 * 119.99500 * 359.97438 * 12 11 9 14 14 C 1.38949 * 120.00231 * 179.97438 * 12 11 9 15 15 N 1.31406 * 120.00141 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99913 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47460 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47190 * 120.00071 * 16 14 12 19 19 H 1.48503 * 109.47425 * 240.00408 * 16 14 12 20 20 C 1.46851 * 111.19462 * 61.74088 * 7 6 5 21 21 C 1.53035 * 109.52477 * 298.25721 * 20 7 6 22 22 H 4.38547 * 5.43919 * 180.02562 * 4 1 2 23 23 H 0.96701 * 114.00445 * 300.00118 * 4 3 2 24 24 H 1.09003 * 109.50346 * 57.68882 * 5 3 2 25 25 H 1.09006 * 109.50560 * 177.80379 * 5 3 2 26 26 H 1.09004 * 109.46380 * 180.80504 * 6 5 3 27 27 H 1.09001 * 109.45935 * 60.83831 * 6 5 3 28 28 H 1.09000 * 109.47324 * 289.43518 * 8 7 6 29 29 H 1.09001 * 109.47011 * 49.43883 * 8 7 6 30 30 H 0.97003 * 120.00374 * 359.97438 * 11 9 8 31 31 H 0.96993 * 120.00253 * 179.97438 * 15 14 12 32 32 H 1.09007 * 109.46088 * 178.23971 * 20 7 6 33 33 H 1.08997 * 109.46298 * 58.27581 * 20 7 6 34 34 H 1.09002 * 109.50376 * 299.24167 * 21 20 7 35 35 H 1.09001 * 109.50208 * 179.12410 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1232 0.6015 1.2055 5 6 3.1573 0.7938 -1.2058 6 6 2.6926 0.1105 -2.4939 7 7 3.2091 -1.2635 -2.5344 8 6 2.8993 -1.9047 -3.8193 9 6 3.6577 -3.2023 -3.9289 10 8 4.4693 -3.5041 -3.0795 11 7 3.4342 -4.0275 -4.9707 12 6 4.1237 -5.2083 -5.0702 13 1 4.8464 -5.4769 -4.3139 14 6 3.8928 -6.0594 -6.1441 15 7 3.0139 -5.7323 -7.0645 16 14 4.8329 -7.6678 -6.2799 17 1 5.7571 -7.8002 -5.1250 18 1 3.8751 -8.8026 -6.2794 19 1 5.6137 -7.6797 -7.5431 20 6 2.6936 -2.0578 -1.4120 21 6 3.1583 -1.4393 -0.0917 22 1 -1.0501 -0.0003 -0.0002 23 1 2.8379 1.5173 1.3283 24 1 2.7608 1.8085 -1.1686 25 1 4.2466 0.8271 -1.1841 26 1 3.0671 0.6648 -3.3545 27 1 1.6031 0.0900 -2.5214 28 1 1.8291 -2.1033 -3.8776 29 1 3.1911 -1.2433 -4.6351 30 1 2.7848 -3.7865 -5.6499 31 1 2.8530 -6.3262 -7.8143 32 1 3.0688 -3.0785 -1.4869 33 1 1.6042 -2.0683 -1.4446 34 1 4.2477 -1.4411 -0.0524 35 1 2.7626 -2.0202 0.7415 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708115866.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:22 Heat of formation + Delta-G solvation = -50.082079 kcal Electronic energy + Delta-G solvation = -18537.000034 eV Core-core repulsion = 15535.547819 eV Total energy + Delta-G solvation = -3001.452215 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.01606 -39.80173 -37.45737 -35.89033 -34.12416 -33.27443 -32.37249 -31.96304 -28.69140 -26.41954 -24.46707 -24.15277 -21.89284 -21.01560 -19.87653 -19.22706 -17.95951 -17.51260 -16.88119 -16.54009 -16.36163 -15.89362 -15.75248 -15.35275 -15.25412 -14.77104 -14.11550 -14.01670 -13.50505 -13.31215 -12.95301 -12.74623 -12.64795 -12.41524 -12.31078 -12.29360 -12.10578 -11.92717 -11.56611 -11.53931 -11.43806 -10.84085 -10.28755 -9.99021 -9.22695 -8.45851 -5.94253 1.36936 1.42189 1.56352 1.72854 1.78904 2.06479 2.28922 2.71558 3.20918 3.23135 3.25591 3.38358 3.73572 3.82657 4.13521 4.22920 4.29841 4.42864 4.49744 4.51620 4.58119 4.73574 4.83230 4.85297 4.94271 5.03357 5.09455 5.26939 5.42240 5.87531 6.06418 6.19010 6.58835 6.61984 6.74044 7.14400 7.57772 8.13863 8.71967 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.044441 B = 0.004424 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.903956 B = 6327.600316 C = 6461.359154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.244 4.244 3 C 0.246 3.754 4 O -0.559 6.559 5 C -0.127 4.127 6 C 0.057 3.943 7 N -0.531 5.531 8 C 0.058 3.942 9 C 0.441 3.559 10 O -0.613 6.613 11 N -0.575 5.575 12 C -0.331 4.331 13 H 0.078 0.922 14 C -0.012 4.012 15 N -0.922 5.922 16 Si 0.992 3.008 17 H -0.274 1.274 18 H -0.271 1.271 19 H -0.270 1.270 20 C 0.067 3.933 21 C -0.093 4.093 22 H 0.248 0.752 23 H 0.395 0.605 24 H 0.101 0.899 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.040 0.960 28 H 0.064 0.936 29 H 0.115 0.885 30 H 0.396 0.604 31 H 0.277 0.723 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.073 0.927 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.508 14.264 8.912 18.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.245 4.245 3 C 0.205 3.795 4 O -0.367 6.367 5 C -0.165 4.165 6 C -0.071 4.071 7 N -0.256 5.256 8 C -0.073 4.073 9 C 0.228 3.772 10 O -0.499 6.499 11 N -0.213 5.213 12 C -0.461 4.461 13 H 0.096 0.904 14 C -0.212 4.212 15 N -0.563 5.563 16 Si 0.816 3.184 17 H -0.199 1.199 18 H -0.196 1.196 19 H -0.196 1.196 20 C -0.061 4.061 21 C -0.131 4.131 22 H 0.265 0.735 23 H 0.246 0.754 24 H 0.119 0.881 25 H 0.102 0.898 26 H 0.115 0.885 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.133 0.867 30 H 0.229 0.771 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.236 13.420 9.430 17.217 hybrid contribution -1.170 -0.461 -0.719 1.448 sum -6.405 12.959 8.711 16.877 Atomic orbital electron populations 1.25810 0.96718 0.98212 0.97947 1.24040 0.95477 1.02556 1.02407 1.17999 0.82135 0.93783 0.85583 1.86592 1.76168 1.33028 1.40931 1.22209 1.02659 0.99334 0.92272 1.22170 0.97667 0.87985 0.99247 1.61497 1.60480 1.02596 1.01054 1.21730 0.97982 0.93867 0.93716 1.20766 0.86324 0.87087 0.82987 1.90485 1.39496 1.77107 1.42804 1.41950 1.38174 1.18299 1.22885 1.19691 1.20650 0.96817 1.08899 0.90376 1.26009 0.97844 1.02646 0.94697 1.69672 1.34551 1.39456 1.12593 0.84885 0.78019 0.77265 0.78252 1.19868 1.19643 1.19564 1.21945 0.96253 0.97836 0.90082 1.21404 1.01855 0.93311 0.96497 0.73531 0.75438 0.88083 0.89832 0.88550 0.94197 0.91828 0.86673 0.77050 0.91337 0.91872 0.95004 0.90783 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.21 19.25 74.32 1.43 -1.78 16 2 C -0.24 -5.61 9.85 31.12 0.31 -5.31 16 3 C 0.25 5.96 1.10 -12.52 -0.01 5.94 16 4 O -0.56 -12.45 12.96 -148.98 -1.93 -14.38 16 5 C -0.13 -2.68 5.20 30.64 0.16 -2.53 16 6 C 0.06 1.37 5.25 86.33 0.45 1.82 16 7 N -0.53 -17.66 4.35 -900.94 -3.92 -21.58 16 8 C 0.06 2.05 5.45 85.56 0.47 2.52 16 9 C 0.44 21.31 7.31 87.66 0.64 21.95 16 10 O -0.61 -34.38 14.28 -3.08 -0.04 -34.43 16 11 N -0.58 -29.85 5.29 -306.98 -1.62 -31.48 16 12 C -0.33 -18.98 9.68 84.04 0.81 -18.16 16 13 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 14 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 15 N -0.92 -49.98 13.05 21.66 0.28 -49.70 16 16 Si 0.99 43.30 29.55 68.60 2.03 45.33 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 19 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 20 C 0.07 2.31 4.91 86.32 0.42 2.73 16 21 C -0.09 -2.83 5.23 30.64 0.16 -2.67 16 22 H 0.25 2.65 7.80 -4.41 -0.03 2.62 16 23 H 0.40 5.13 9.03 -74.06 -0.67 4.46 16 24 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.08 1.91 8.14 -2.38 -0.02 1.90 16 26 H 0.10 2.00 8.01 -2.38 -0.02 1.98 16 27 H 0.04 0.93 7.31 -2.39 -0.02 0.91 16 28 H 0.06 2.04 8.12 -2.39 -0.02 2.02 16 29 H 0.12 3.50 7.98 -2.39 -0.02 3.48 16 30 H 0.40 19.46 7.90 -92.71 -0.73 18.73 16 31 H 0.28 14.03 8.31 -92.71 -0.77 13.25 16 32 H 0.06 2.69 6.05 -2.38 -0.01 2.68 16 33 H 0.03 1.04 7.31 -2.39 -0.02 1.02 16 34 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -70.47 297.08 -0.19 -70.65 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: -0.29 Total: 31.26 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 5.31 Total: 4.32 kcal Atomic # 7 Polarization: -97.49 SS G_CDS: -5.26 Total: -102.75 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -1.97 Total: -48.81 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -70.47 -0.19 -70.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708115866.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.569 kcal (2) G-P(sol) polarization free energy of solvation -70.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds