Wall clock time and date at job start Mon Mar 30 2020 03:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37847 * 125.89845 * 2 1 4 4 C 1.47101 * 127.02223 * 359.94721 * 3 2 1 5 5 O 1.21550 * 120.00527 * 270.17556 * 4 3 2 6 6 O 1.34790 * 120.00132 * 90.17745 * 4 3 2 7 7 C 1.46739 * 105.95234 * 180.09470 * 3 2 1 8 8 C 1.50700 * 126.81377 * 179.87065 * 7 3 2 9 9 H 1.08994 * 109.47551 * 194.68512 * 8 7 3 10 10 N 1.46900 * 109.47395 * 314.68974 * 8 7 3 11 11 C 1.50702 * 109.46869 * 74.68567 * 8 7 3 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 8 7 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 8 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 8 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 C 1.34434 * 106.37607 * 359.61167 * 7 3 2 20 20 C 1.50702 * 125.46022 * 180.27630 * 19 7 3 21 21 N 1.34630 * 125.89600 * 179.65313 * 2 1 3 22 22 C 1.46496 * 124.80904 * 0.02562 * 21 2 1 23 23 H 1.08998 * 109.47294 * 270.34627 * 1 2 3 24 24 H 1.08995 * 109.47134 * 30.34717 * 1 2 3 25 25 H 1.09000 * 109.46773 * 150.34364 * 1 2 3 26 26 H 0.96696 * 117.00795 * 179.97438 * 6 4 3 27 27 H 1.00903 * 111.00086 * 59.99217 * 10 8 7 28 28 H 1.00902 * 111.00206 * 183.95155 * 10 8 7 29 29 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 30 30 H 1.08995 * 109.47248 * 89.99497 * 20 19 7 31 31 H 1.09001 * 109.47116 * 209.99989 * 20 19 7 32 32 H 1.09009 * 109.47055 * 330.00059 * 20 19 7 33 33 H 1.08998 * 109.47360 * 270.01775 * 22 21 2 34 34 H 1.08995 * 109.47324 * 30.02870 * 22 21 2 35 35 H 1.09005 * 109.47352 * 150.02338 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3153 1.1166 0.0000 4 6 1.8832 2.5228 -0.0011 5 8 1.7024 3.1023 -1.0541 6 8 1.6879 3.1687 1.1657 7 6 3.6946 0.6161 -0.0023 8 6 4.9550 1.4421 -0.0059 9 1 5.8033 0.8096 -0.2675 10 7 4.8287 2.5241 -0.9915 11 6 5.1723 2.0329 1.3633 12 1 4.4684 1.8301 2.1569 13 6 6.2732 2.8272 1.6047 14 7 7.1306 3.0739 0.6384 15 14 6.5466 3.5532 3.3039 16 1 7.3565 2.6129 4.1195 17 1 7.2657 4.8465 3.1798 18 1 5.2351 3.7774 3.9634 19 6 3.6109 -0.7256 0.0052 20 6 4.7816 -1.6746 0.0120 21 7 2.2963 -1.0906 0.0066 22 6 1.8123 -2.4732 0.0144 23 1 -0.3634 0.0062 1.0276 24 1 -0.3633 0.8868 -0.5192 25 1 -0.3633 -0.8931 -0.5085 26 1 1.4045 4.0918 1.1145 27 1 4.0486 3.1249 -0.7709 28 1 5.6850 3.0534 -1.0593 29 1 7.9049 3.6330 0.8081 30 1 5.0627 -1.8975 1.0412 31 1 4.5040 -2.5977 -0.4969 32 1 5.6250 -1.2149 -0.5035 33 1 1.6915 -2.8101 1.0440 34 1 0.8527 -2.5252 -0.4999 35 1 2.5326 -3.1133 -0.4951 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713727866.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:40 Heat of formation + Delta-G solvation = -52.799449 kcal Electronic energy + Delta-G solvation = -19334.772952 eV Core-core repulsion = 16333.202903 eV Total energy + Delta-G solvation = -3001.570049 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.87716 -38.98151 -35.26867 -34.85916 -32.32108 -32.25724 -30.49389 -28.84408 -26.61987 -26.05248 -24.45871 -22.22513 -21.50998 -18.97763 -18.04416 -17.22497 -16.46699 -15.92921 -15.31147 -15.11500 -14.64454 -14.52468 -13.81934 -13.27631 -13.08400 -12.87329 -12.82420 -12.54011 -12.40114 -12.04441 -11.98689 -11.78078 -11.28841 -11.16214 -11.00720 -10.85421 -10.74886 -10.40686 -9.96384 -9.89587 -9.57031 -8.52089 -7.73825 -7.29810 -6.95073 -5.94860 -4.11134 2.53309 2.89872 3.20327 3.29271 3.34930 3.37600 3.46970 4.12756 4.44003 4.91448 5.02704 5.17492 5.25179 5.28081 5.42911 5.55489 5.64986 5.73681 5.93534 6.10619 6.13627 6.33183 6.45556 6.58816 6.70723 6.97539 7.14307 7.49525 7.53337 7.85087 7.88540 7.94945 8.29685 8.65625 8.83547 9.11805 9.29441 9.60127 11.01134 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.020431 B = 0.008808 C = 0.007391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.139386 B = 3178.269611 C = 3787.316730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.053 3.947 3 C -0.197 4.197 4 C 0.578 3.422 5 O -0.517 6.517 6 O -0.508 6.508 7 C -0.045 4.045 8 C 0.266 3.734 9 H 0.048 0.952 10 N -0.847 5.847 11 C -0.533 4.533 12 H 0.057 0.943 13 C 0.063 3.937 14 N -0.897 5.897 15 Si 0.894 3.106 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.015 4.015 20 C -0.071 4.071 21 N -0.440 5.440 22 C 0.073 3.927 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.065 0.935 26 H 0.399 0.601 27 H 0.311 0.689 28 H 0.352 0.648 29 H 0.263 0.737 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.730 -8.724 0.434 13.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.062 4.062 3 C -0.207 4.207 4 C 0.421 3.579 5 O -0.405 6.405 6 O -0.318 6.318 7 C -0.051 4.051 8 C 0.155 3.845 9 H 0.066 0.934 10 N -0.378 5.378 11 C -0.573 4.573 12 H 0.075 0.925 13 C -0.138 4.138 14 N -0.536 5.536 15 Si 0.722 3.278 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.122 4.122 20 C -0.128 4.128 21 N -0.117 5.117 22 C -0.069 4.069 23 H 0.091 0.909 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.255 0.745 27 H 0.121 0.879 28 H 0.168 0.832 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.668 -9.838 -0.413 14.518 hybrid contribution 0.219 1.665 1.842 2.493 sum -10.449 -8.173 1.429 13.342 Atomic orbital electron populations 1.20325 0.88257 1.02975 1.02481 1.19965 0.92436 0.85316 1.08462 1.19129 0.94306 0.87914 1.19326 1.20005 0.70980 0.86497 0.80414 1.90846 1.48241 1.68390 1.33068 1.84787 1.80487 1.30436 1.36061 1.20836 0.93057 0.91243 0.99942 1.17508 0.87587 0.89415 0.89952 0.93425 1.59436 1.09597 1.17229 1.51518 1.21886 1.08269 1.29898 0.97272 0.92498 1.25017 0.95481 0.96263 0.97074 1.69761 1.13371 1.38649 1.31861 0.86561 0.78271 0.78420 0.84577 1.20695 1.21317 1.19797 1.19809 0.83388 0.94430 1.14562 1.20195 0.94549 0.95955 1.02134 1.43019 1.05460 1.05063 1.58183 1.21923 1.00916 0.81282 1.02791 0.90913 0.90580 0.91661 0.74476 0.87947 0.83169 0.92664 0.91583 0.93045 0.89862 0.91297 0.90375 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 9.89 36.01 0.36 -0.72 16 2 C 0.05 0.94 6.93 -81.51 -0.56 0.38 16 3 C -0.20 -4.32 6.15 -103.01 -0.63 -4.95 16 4 C 0.58 12.46 6.09 34.33 0.21 12.67 16 5 O -0.52 -11.91 17.15 -19.30 -0.33 -12.25 16 6 O -0.51 -9.62 13.44 -40.74 -0.55 -10.17 16 7 C -0.05 -1.06 5.20 -102.53 -0.53 -1.59 16 8 C 0.27 7.02 3.05 -70.02 -0.21 6.80 16 9 H 0.05 1.33 6.81 -51.93 -0.35 0.97 16 10 N -0.85 -22.63 9.15 -6.65 -0.06 -22.69 16 11 C -0.53 -14.93 8.71 -34.44 -0.30 -15.23 16 12 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 13 C 0.06 1.76 5.38 -17.82 -0.10 1.66 16 14 N -0.90 -25.44 11.55 55.43 0.64 -24.80 16 15 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 19 C -0.02 -0.30 6.84 -81.89 -0.56 -0.86 16 20 C -0.07 -1.15 9.80 36.01 0.35 -0.80 16 21 N -0.44 -7.28 3.08 -115.00 -0.35 -7.64 16 22 C 0.07 0.78 10.60 59.84 0.63 1.41 16 23 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.08 1.01 7.97 -51.93 -0.41 0.59 16 25 H 0.06 0.66 6.93 -51.93 -0.36 0.30 16 26 H 0.40 5.39 9.11 45.56 0.42 5.80 16 27 H 0.31 8.34 6.18 -39.29 -0.24 8.09 16 28 H 0.35 9.82 7.09 -39.29 -0.28 9.54 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.66 6.93 -51.93 -0.36 0.30 16 32 H 0.08 1.46 6.99 -51.92 -0.36 1.10 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.67 6.88 -51.93 -0.36 0.31 16 35 H 0.08 0.76 6.89 -51.93 -0.36 0.40 16 LS Contribution 296.11 15.07 4.46 4.46 Total: -1.00 -33.98 296.11 -6.04 -40.02 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -3.48 Total: 17.70 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -1.35 Total: -1.22 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.22 Total: -55.13 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.88 Total: -22.41 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.98 -6.04 -40.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713727866.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.780 kcal (2) G-P(sol) polarization free energy of solvation -33.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds