Wall clock time and date at job start Mon Mar 30 2020 03:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37847 * 125.89845 * 2 1 4 4 C 1.47101 * 127.02223 * 359.94721 * 3 2 1 5 5 O 1.21550 * 120.00527 * 270.17556 * 4 3 2 6 6 O 1.34790 * 120.00132 * 90.17745 * 4 3 2 7 7 C 1.46739 * 105.95234 * 180.09470 * 3 2 1 8 8 C 1.50700 * 126.81377 * 179.87065 * 7 3 2 9 9 H 1.08994 * 109.47551 * 194.68512 * 8 7 3 10 10 N 1.46900 * 109.47395 * 314.68974 * 8 7 3 11 11 C 1.50702 * 109.46869 * 74.68567 * 8 7 3 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 8 7 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 8 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 8 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 C 1.34434 * 106.37607 * 359.61167 * 7 3 2 20 20 C 1.50702 * 125.46022 * 180.27630 * 19 7 3 21 21 N 1.34630 * 125.89600 * 179.65313 * 2 1 3 22 22 C 1.46496 * 124.80904 * 0.02562 * 21 2 1 23 23 H 1.08998 * 109.47294 * 270.34627 * 1 2 3 24 24 H 1.08995 * 109.47134 * 30.34717 * 1 2 3 25 25 H 1.09000 * 109.46773 * 150.34364 * 1 2 3 26 26 H 0.96696 * 117.00795 * 179.97438 * 6 4 3 27 27 H 1.00903 * 111.00086 * 59.99217 * 10 8 7 28 28 H 1.00902 * 111.00206 * 183.95155 * 10 8 7 29 29 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 30 30 H 1.08995 * 109.47248 * 89.99497 * 20 19 7 31 31 H 1.09001 * 109.47116 * 209.99989 * 20 19 7 32 32 H 1.09009 * 109.47055 * 330.00059 * 20 19 7 33 33 H 1.08998 * 109.47360 * 270.01775 * 22 21 2 34 34 H 1.08995 * 109.47324 * 30.02870 * 22 21 2 35 35 H 1.09005 * 109.47352 * 150.02338 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3153 1.1166 0.0000 4 6 1.8832 2.5228 -0.0011 5 8 1.7024 3.1023 -1.0541 6 8 1.6879 3.1687 1.1657 7 6 3.6946 0.6161 -0.0023 8 6 4.9550 1.4421 -0.0059 9 1 5.8033 0.8096 -0.2675 10 7 4.8287 2.5241 -0.9915 11 6 5.1723 2.0329 1.3633 12 1 4.4684 1.8301 2.1569 13 6 6.2732 2.8272 1.6047 14 7 7.1306 3.0739 0.6384 15 14 6.5466 3.5532 3.3039 16 1 7.3565 2.6129 4.1195 17 1 7.2657 4.8465 3.1798 18 1 5.2351 3.7774 3.9634 19 6 3.6109 -0.7256 0.0052 20 6 4.7816 -1.6746 0.0120 21 7 2.2963 -1.0906 0.0066 22 6 1.8123 -2.4732 0.0144 23 1 -0.3634 0.0062 1.0276 24 1 -0.3633 0.8868 -0.5192 25 1 -0.3633 -0.8931 -0.5085 26 1 1.4045 4.0918 1.1145 27 1 4.0486 3.1249 -0.7709 28 1 5.6850 3.0534 -1.0593 29 1 7.9049 3.6330 0.8081 30 1 5.0627 -1.8975 1.0412 31 1 4.5040 -2.5977 -0.4969 32 1 5.6250 -1.2149 -0.5035 33 1 1.6915 -2.8101 1.0440 34 1 0.8527 -2.5252 -0.4999 35 1 2.5326 -3.1133 -0.4951 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713727866.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:40 Heat of formation + Delta-G solvation = -78.154807 kcal Electronic energy + Delta-G solvation = -19335.872443 eV Core-core repulsion = 16333.202903 eV Total energy + Delta-G solvation = -3002.669540 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.28051 -40.56721 -36.90495 -36.74919 -33.96826 -33.59697 -32.32804 -30.01655 -28.23611 -27.69710 -26.12962 -23.62580 -23.23926 -20.49946 -19.56237 -18.86145 -18.48839 -17.43862 -16.80090 -16.49629 -16.23625 -16.21187 -15.66252 -14.76424 -14.55147 -14.32410 -14.10583 -13.96773 -13.73824 -13.43901 -13.30184 -13.07526 -12.90404 -12.73756 -12.69043 -12.49721 -12.41446 -12.19636 -11.90374 -11.57587 -11.53008 -10.65060 -9.30508 -9.09768 -8.69303 -8.04670 -6.31222 1.17787 1.27552 1.36509 1.37471 1.48640 1.76444 2.02154 2.41231 2.68414 3.09498 3.86862 4.03974 4.09771 4.32461 4.46244 4.49836 4.56510 4.67211 4.74827 4.74943 4.86422 4.90557 4.97157 5.06835 5.17346 5.28504 5.63293 5.67410 5.73768 5.92127 6.18982 6.35018 6.58880 6.68750 6.97296 7.09635 7.16627 7.42882 8.87584 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.020431 B = 0.008808 C = 0.007391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.139386 B = 3178.269611 C = 3787.316730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.071 3.929 3 C -0.252 4.252 4 C 0.580 3.420 5 O -0.544 6.544 6 O -0.510 6.510 7 C -0.102 4.102 8 C 0.271 3.729 9 H 0.020 0.980 10 N -0.844 5.844 11 C -0.544 4.544 12 H 0.041 0.959 13 C 0.018 3.982 14 N -0.919 5.919 15 Si 0.956 3.044 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.273 1.273 19 C -0.013 4.013 20 C -0.068 4.068 21 N -0.431 5.431 22 C 0.060 3.940 23 H 0.092 0.908 24 H 0.069 0.931 25 H 0.102 0.898 26 H 0.419 0.581 27 H 0.308 0.692 28 H 0.341 0.659 29 H 0.266 0.734 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.464 -10.719 1.354 16.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.046 4.046 3 C -0.261 4.261 4 C 0.425 3.575 5 O -0.435 6.435 6 O -0.322 6.322 7 C -0.107 4.107 8 C 0.161 3.839 9 H 0.038 0.962 10 N -0.373 5.373 11 C -0.584 4.584 12 H 0.060 0.940 13 C -0.181 4.181 14 N -0.559 5.559 15 Si 0.782 3.218 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.198 1.198 19 C -0.122 4.122 20 C -0.125 4.125 21 N -0.107 5.107 22 C -0.079 4.079 23 H 0.111 0.889 24 H 0.088 0.912 25 H 0.121 0.879 26 H 0.279 0.721 27 H 0.118 0.882 28 H 0.155 0.845 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.126 0.874 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.424 -11.860 0.521 17.184 hybrid contribution 0.711 2.220 1.551 2.800 sum -11.713 -9.640 2.072 15.311 Atomic orbital electron populations 1.20491 0.84546 1.04537 1.04181 1.20647 0.94484 0.84446 1.04994 1.19409 0.94527 0.89137 1.23026 1.20146 0.70242 0.86765 0.80368 1.90809 1.49677 1.69077 1.33944 1.84741 1.80163 1.32123 1.35164 1.20668 0.92662 0.93005 1.04407 1.17274 0.88739 0.89033 0.88849 0.96232 1.59462 1.08753 1.17087 1.52003 1.21987 1.08166 1.30471 0.97729 0.94039 1.25755 0.95183 0.96553 1.00615 1.69862 1.13636 1.38969 1.33468 0.85584 0.78056 0.77856 0.80307 1.19844 1.20681 1.19818 1.20104 0.85646 0.93785 1.12638 1.20224 0.92741 0.96785 1.02742 1.43356 1.04151 1.07182 1.55974 1.22422 1.02735 0.77873 1.04877 0.88935 0.91195 0.87946 0.72139 0.88211 0.84474 0.92476 0.91008 0.88915 0.92129 0.89308 0.87407 0.88227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.79 9.89 71.24 0.70 -1.08 16 2 C 0.07 2.40 6.93 42.04 0.29 2.69 16 3 C -0.25 -11.09 6.15 -18.82 -0.12 -11.20 16 4 C 0.58 25.46 6.09 70.15 0.43 25.88 16 5 O -0.54 -25.71 17.15 19.67 0.34 -25.37 16 6 O -0.51 -19.47 13.44 -57.02 -0.77 -20.24 16 7 C -0.10 -4.87 5.20 -18.51 -0.10 -4.97 16 8 C 0.27 14.94 3.05 43.42 0.13 15.08 16 9 H 0.02 1.17 6.81 -2.39 -0.02 1.15 16 10 N -0.84 -47.18 9.15 -174.96 -1.60 -48.78 16 11 C -0.54 -31.40 8.71 25.60 0.22 -31.18 16 12 H 0.04 2.47 7.74 -2.91 -0.02 2.45 16 13 C 0.02 1.03 5.38 84.66 0.46 1.49 16 14 N -0.92 -53.45 11.55 21.45 0.25 -53.20 16 15 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 16 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 18 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 19 C -0.01 -0.51 6.84 40.97 0.28 -0.23 16 20 C -0.07 -2.13 9.80 71.24 0.70 -1.43 16 21 N -0.43 -13.06 3.08 -517.75 -1.60 -14.65 16 22 C 0.06 0.99 10.60 127.77 1.35 2.35 16 23 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.07 1.68 7.97 -2.39 -0.02 1.66 16 25 H 0.10 1.52 6.93 -2.39 -0.02 1.51 16 26 H 0.42 11.34 9.11 -74.06 -0.67 10.67 16 27 H 0.31 17.29 6.18 -89.69 -0.55 16.74 16 28 H 0.34 19.91 7.09 -89.69 -0.64 19.27 16 29 H 0.27 14.65 8.31 -92.70 -0.77 13.88 16 30 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.09 2.08 6.93 -2.39 -0.02 2.06 16 32 H 0.06 2.17 6.99 -2.38 -0.02 2.16 16 33 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 34 H 0.11 1.18 6.88 -2.39 -0.02 1.17 16 35 H 0.10 1.33 6.89 -2.38 -0.02 1.32 16 Total: -1.00 -77.00 296.11 2.29 -74.71 By element: Atomic # 1 Polarization: 43.97 SS G_CDS: -0.71 Total: 43.26 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 4.36 Total: -2.61 kcal Atomic # 7 Polarization: -113.68 SS G_CDS: -2.95 Total: -116.63 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -0.43 Total: -45.61 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -77.00 2.29 -74.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713727866.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.446 kcal (2) G-P(sol) polarization free energy of solvation -76.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds