Wall clock time and date at job start Mon Mar 30 2020 03:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 112.84782 * 2 1 4 4 N 1.29946 * 126.28978 * 230.30510 * 3 2 1 5 5 O 1.21299 * 110.25599 * 179.97438 * 4 3 2 6 6 C 1.33642 * 109.81016 * 0.02562 * 5 4 3 7 7 C 1.50698 * 126.55318 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.46815 * 270.01918 * 7 6 5 9 9 H 1.08992 * 109.47264 * 55.00097 * 8 7 6 10 10 O 1.42901 * 109.46736 * 294.99483 * 8 7 6 11 11 C 1.50699 * 109.46847 * 174.99923 * 8 7 6 12 12 H 1.08002 * 120.00511 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99783 * 179.97438 * 11 8 7 14 14 N 1.31514 * 119.99573 * 180.27665 * 13 11 8 15 15 Si 1.86800 * 119.99781 * 359.97438 * 13 11 8 16 16 H 1.48501 * 109.46758 * 89.99934 * 15 13 11 17 17 H 1.48499 * 109.47026 * 209.99782 * 15 13 11 18 18 H 1.48496 * 109.47474 * 329.99818 * 15 13 11 19 19 N 1.31134 * 106.89595 * 0.21731 * 6 5 4 20 20 C 1.53781 * 113.61434 * 131.19812 * 2 1 3 21 21 C 1.53948 * 87.01821 * 89.23022 * 20 2 1 22 22 C 1.53775 * 87.11442 * 25.36184 * 21 20 2 23 23 H 1.08998 * 109.47064 * 69.66335 * 1 2 3 24 24 H 1.08999 * 109.46874 * 189.66806 * 1 2 3 25 25 H 1.08998 * 109.46834 * 309.66934 * 1 2 3 26 26 H 1.08997 * 109.47275 * 150.01410 * 7 6 5 27 27 H 1.08998 * 109.47248 * 30.01782 * 7 6 5 28 28 H 0.96700 * 114.00539 * 300.00505 * 10 8 7 29 29 H 0.97004 * 119.99485 * 179.72881 * 14 13 11 30 30 H 1.09006 * 113.60934 * 203.75225 * 20 2 1 31 31 H 1.09001 * 113.61235 * 334.64626 * 20 2 1 32 32 H 1.09000 * 113.53650 * 270.80625 * 21 20 2 33 33 H 1.09001 * 113.74051 * 139.94588 * 21 20 2 34 34 H 1.08998 * 113.61857 * 220.08882 * 22 21 20 35 35 H 1.09006 * 113.61606 * 89.18793 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1152 1.3888 0.0000 4 7 3.0303 1.8378 -0.8059 5 8 3.2854 2.9953 -0.5485 6 6 2.5348 3.4071 0.4777 7 6 2.5467 4.7770 1.1055 8 6 3.5740 4.8098 2.2388 9 1 4.5462 4.4983 1.8571 10 8 3.1636 3.9206 3.2795 11 6 3.6744 6.2105 2.7855 12 1 3.0660 6.9985 2.3668 13 6 4.5423 6.4859 3.8210 14 7 4.6259 7.7072 4.3016 15 14 5.5930 5.1225 4.5465 16 1 6.8829 5.0489 3.8144 17 1 5.8532 5.4079 5.9804 18 1 4.8783 3.8268 4.4215 19 7 1.7898 2.3897 0.8374 20 6 2.1461 -0.9281 1.0602 21 6 2.0951 -2.0419 -0.0013 22 6 2.1460 -0.9280 -1.0602 23 1 -0.3633 0.3571 -0.9636 24 1 -0.3633 -1.0131 0.1726 25 1 -0.3633 0.6560 0.7910 26 1 1.5578 5.0023 1.5048 27 1 2.8122 5.5194 0.3528 28 1 2.3046 4.1380 3.6667 29 1 5.2335 7.9001 5.0327 30 1 3.1586 -0.6476 1.3506 31 1 1.4940 -1.1079 1.9149 32 1 1.1595 -2.6013 -0.0007 33 1 2.9738 -2.6868 -0.0033 34 1 1.4940 -1.1078 -1.9150 35 1 3.1586 -0.6476 -1.3507 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721697145.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:44 Heat of formation + Delta-G solvation = 30.031167 kcal Electronic energy + Delta-G solvation = -18697.435718 eV Core-core repulsion = 15699.457474 eV Total energy + Delta-G solvation = -2997.978244 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.15093 -39.54926 -36.70308 -35.08300 -32.69813 -32.34248 -29.72133 -29.55756 -26.24691 -25.74674 -25.21653 -22.83680 -21.91854 -20.72809 -18.61572 -17.71318 -17.55735 -16.86086 -15.74705 -15.15483 -14.91120 -14.68902 -14.43596 -13.90587 -13.43073 -12.98330 -12.86781 -12.51182 -12.46851 -12.32192 -11.78223 -11.59851 -11.30913 -11.22946 -11.03016 -10.90209 -10.73345 -10.60033 -10.43317 -10.35573 -10.19533 -9.47715 -9.15835 -8.71526 -8.40057 -6.21872 -4.35442 1.57065 2.62808 3.28981 3.34866 3.44955 3.70682 3.84199 4.08994 4.42895 4.46686 4.60682 4.66235 4.73798 5.11885 5.31573 5.40384 5.43378 5.58511 5.58786 5.65827 5.70148 5.75884 5.81611 5.87890 5.90525 5.94430 6.10319 6.12188 6.30629 6.36972 6.46051 7.10711 7.40784 8.17273 8.58132 8.71164 8.92147 9.41218 10.88027 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.035684 B = 0.005386 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.468904 B = 5197.447454 C = 5482.475141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.004 3.996 3 C 0.180 3.820 4 N -0.398 5.398 5 O 0.064 5.936 6 C 0.208 3.792 7 C -0.051 4.051 8 C 0.202 3.798 9 H 0.060 0.940 10 O -0.575 6.575 11 C -0.568 4.568 12 H 0.078 0.922 13 C 0.089 3.911 14 N -0.887 5.887 15 Si 0.868 3.132 16 H -0.286 1.286 17 H -0.294 1.294 18 H -0.218 1.218 19 N -0.480 5.480 20 C -0.120 4.120 21 C -0.139 4.139 22 C -0.125 4.125 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.106 0.894 27 H 0.103 0.897 28 H 0.361 0.639 29 H 0.267 0.733 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.923 -15.346 -8.293 18.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.003 3.997 3 C -0.093 4.093 4 N -0.108 5.108 5 O 0.008 5.992 6 C -0.011 4.011 7 C -0.090 4.090 8 C 0.143 3.857 9 H 0.077 0.923 10 O -0.381 6.381 11 C -0.605 4.605 12 H 0.096 0.904 13 C -0.117 4.117 14 N -0.523 5.523 15 Si 0.694 3.306 16 H -0.213 1.213 17 H -0.220 1.220 18 H -0.140 1.140 19 N -0.213 5.213 20 C -0.158 4.158 21 C -0.177 4.177 22 C -0.163 4.163 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.124 0.876 27 H 0.121 0.879 28 H 0.207 0.793 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.219 -16.193 -8.705 19.409 hybrid contribution 0.253 0.184 0.553 0.636 sum -5.966 -16.009 -8.152 18.930 Atomic orbital electron populations 1.21540 0.91024 1.02587 1.02819 1.20196 0.95981 0.84184 0.99388 1.25493 0.94590 0.98463 0.90747 1.74496 1.18736 0.93833 1.23755 1.85263 1.51470 1.20310 1.42138 1.29321 0.86490 0.99490 0.85826 1.21267 1.04761 0.83404 0.99580 1.19764 0.91759 0.90897 0.83276 0.92276 1.86712 1.40199 1.57124 1.54102 1.21365 1.26126 0.93144 1.19869 0.90372 1.24934 0.95754 0.95500 0.95483 1.69935 1.36781 1.19855 1.25776 0.87068 0.80009 0.85865 0.77686 1.21267 1.22017 1.14001 1.71855 1.25724 0.98892 1.24828 1.22994 1.01581 0.94614 0.96620 1.22859 1.02388 0.96241 0.96182 1.22997 1.01945 0.94946 0.96415 0.92290 0.91352 0.90923 0.87603 0.87872 0.79252 0.92353 0.89949 0.90372 0.89771 0.90991 0.90874 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 9.05 37.16 0.34 -0.99 16 2 C 0.00 0.06 1.35 -154.85 -0.21 -0.15 16 3 C 0.18 3.04 6.91 -156.37 -1.08 1.96 16 4 N -0.40 -7.12 11.40 30.90 0.35 -6.77 16 5 O 0.06 1.17 11.31 18.10 0.20 1.38 16 6 C 0.21 3.80 7.54 -13.06 -0.10 3.70 16 7 C -0.05 -0.90 5.46 -27.88 -0.15 -1.06 16 8 C 0.20 4.43 2.30 -27.88 -0.06 4.37 16 9 H 0.06 1.37 7.57 -51.93 -0.39 0.97 16 10 O -0.58 -12.68 9.89 -35.23 -0.35 -13.03 16 11 C -0.57 -14.75 9.34 -34.44 -0.32 -15.07 16 12 H 0.08 2.14 7.99 -52.49 -0.42 1.72 16 13 C 0.09 2.45 5.47 -17.82 -0.10 2.36 16 14 N -0.89 -26.09 13.96 55.43 0.77 -25.32 16 15 Si 0.87 21.30 26.99 -169.99 -4.59 16.71 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 17 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 18 H -0.22 -5.29 5.30 56.52 0.30 -4.99 16 19 N -0.48 -8.76 11.55 -9.87 -0.11 -8.87 16 20 C -0.12 -1.42 7.21 -25.83 -0.19 -1.60 16 21 C -0.14 -1.29 7.74 -25.83 -0.20 -1.49 16 22 C -0.13 -1.39 7.09 -25.92 -0.18 -1.57 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.58 7.34 -51.93 -0.38 0.20 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 27 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 28 H 0.36 7.02 9.04 45.56 0.41 7.43 16 29 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 30 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 31 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 32 H 0.08 0.64 7.64 -51.93 -0.40 0.24 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.09 1.12 7.65 -51.93 -0.40 0.72 16 LS Contribution 294.61 15.07 4.44 4.44 Total: -1.00 -30.59 294.61 -5.72 -36.31 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -4.19 Total: 4.71 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -2.26 Total: -9.55 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 1.01 Total: -40.96 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -0.14 Total: -11.65 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.59 Total: 16.71 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.59 -5.72 -36.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721697145.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.343 kcal (2) G-P(sol) polarization free energy of solvation -30.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds