Wall clock time and date at job start Mon Mar 30 2020 03:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35041 * 126.37743 * 2 1 4 4 H 0.97004 * 124.88467 * 0.05806 * 3 2 1 5 5 N 1.28467 * 110.24215 * 180.02562 * 3 2 1 6 6 C 1.31858 * 110.06329 * 359.71260 * 5 3 2 7 7 C 1.47580 * 126.52786 * 180.28197 * 6 5 3 8 8 O 1.21491 * 120.00103 * 180.20158 * 7 6 5 9 9 O 1.34730 * 119.99681 * 0.18784 * 7 6 5 10 10 C 1.45199 * 116.99707 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47232 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47405 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47406 * 180.02562 * 12 11 10 14 14 H 1.07995 * 119.99779 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00103 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99846 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99888 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47278 * 89.99692 * 17 15 13 19 19 H 1.48502 * 109.47244 * 209.99200 * 17 15 13 20 20 H 1.48495 * 109.47288 * 329.99602 * 17 15 13 21 21 C 1.35344 * 126.38062 * 180.02562 * 2 1 3 22 22 C 1.50703 * 127.24793 * 359.97438 * 21 2 1 23 23 H 1.08993 * 109.47091 * 269.97336 * 1 2 3 24 24 H 1.09001 * 109.47114 * 29.97502 * 1 2 3 25 25 H 1.09000 * 109.47179 * 149.97554 * 1 2 3 26 26 H 1.09003 * 109.47805 * 300.01002 * 10 9 7 27 27 H 1.09007 * 109.47006 * 60.00795 * 10 9 7 28 28 H 1.08996 * 109.47145 * 300.00590 * 11 10 9 29 29 H 1.08995 * 109.46739 * 60.00601 * 11 10 9 30 30 H 1.09009 * 109.47032 * 299.99894 * 12 11 10 31 31 H 1.08998 * 109.47551 * 59.99875 * 12 11 10 32 32 H 0.97007 * 119.99996 * 180.02562 * 16 15 13 33 33 H 1.09002 * 109.47152 * 89.99999 * 22 21 2 34 34 H 1.09001 * 109.46980 * 330.00099 * 22 21 2 35 35 H 1.09004 * 109.47113 * 210.00080 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3080 1.0873 0.0000 4 1 1.9963 2.0059 0.0008 5 7 3.5420 0.7302 -0.0005 6 6 3.6324 -0.5852 0.0053 7 6 4.8756 -1.3803 0.0126 8 8 4.8206 -2.5940 0.0138 9 8 6.0717 -0.7602 0.0176 10 6 7.2524 -1.6054 0.0252 11 6 8.5067 -0.7294 0.0306 12 6 9.7508 -1.6199 0.0380 13 6 10.9863 -0.7571 0.0440 14 1 10.8935 0.3189 0.0423 15 6 12.2352 -1.3413 0.0507 16 7 12.3482 -2.6515 0.0523 17 14 13.7666 -0.2717 0.0574 18 1 14.1654 0.0130 1.4593 19 1 14.8702 -0.9829 -0.6365 20 1 13.4816 1.0052 -0.6451 21 6 2.3098 -1.0896 -0.0005 22 6 1.8850 -2.5356 -0.0006 23 1 -0.3633 -0.0005 1.0276 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3633 -0.8898 -0.5142 26 1 7.2441 -2.2332 0.9162 27 1 7.2533 -2.2363 -0.8638 28 1 8.5151 -0.1013 -0.8602 29 1 8.5056 -0.0989 0.9197 30 1 9.7426 -2.2483 0.9288 31 1 9.7518 -2.2503 -0.8512 32 1 13.2268 -3.0626 0.0573 33 1 1.7823 -2.8840 -1.0283 34 1 0.9289 -2.6334 0.5136 35 1 2.6367 -3.1351 0.5129 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734714084.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:13 Heat of formation + Delta-G solvation = -37.232347 kcal Electronic energy + Delta-G solvation = -17579.292228 eV Core-core repulsion = 14578.397219 eV Total energy + Delta-G solvation = -3000.895009 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.97164 -39.82297 -36.36241 -33.97582 -33.73607 -32.77469 -31.60240 -28.81702 -27.12646 -26.37385 -24.78777 -22.85883 -20.42319 -20.29255 -20.02522 -17.87883 -17.05022 -16.51055 -16.48489 -15.81200 -15.71892 -14.43731 -14.15404 -13.91441 -13.43726 -13.34850 -13.10681 -13.03354 -12.62708 -12.25277 -12.13948 -12.04426 -11.80477 -10.97273 -10.93182 -10.64453 -10.57237 -10.36751 -10.30361 -9.67266 -9.55780 -9.46285 -9.11601 -8.94167 -8.34550 -5.99492 -4.02105 1.31731 1.75629 2.47498 3.02294 3.19702 3.34111 3.40008 3.44067 4.29297 4.34183 4.47749 4.63738 4.96898 5.05350 5.18592 5.36485 5.39018 5.46707 5.62689 5.66102 5.69459 5.76126 5.92234 6.08561 6.24479 6.57190 6.62112 6.70389 6.90007 7.05497 7.57132 7.65728 7.77237 7.99311 8.04695 8.41093 9.04232 9.61870 11.12046 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.054895 B = 0.003299 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.941318 B = 8485.557250 C = 8959.137355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.004 3.996 3 N -0.377 5.377 4 H 0.447 0.553 5 N -0.227 5.227 6 C 0.005 3.995 7 C 0.549 3.451 8 O -0.500 6.500 9 O -0.343 6.343 10 C 0.068 3.932 11 C -0.109 4.109 12 C 0.024 3.976 13 C -0.520 4.520 14 H 0.058 0.942 15 C 0.056 3.944 16 N -0.895 5.895 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.141 4.141 22 C -0.081 4.081 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.261 0.739 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.983 5.342 -0.090 26.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 N -0.093 5.093 4 H 0.291 0.709 5 N -0.064 5.064 6 C -0.153 4.153 7 C 0.391 3.609 8 O -0.387 6.387 9 O -0.258 6.258 10 C -0.005 4.005 11 C -0.146 4.146 12 C -0.013 4.013 13 C -0.559 4.559 14 H 0.076 0.924 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.151 4.151 22 C -0.139 4.139 23 H 0.098 0.902 24 H 0.090 0.910 25 H 0.105 0.895 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -25.118 5.728 -0.099 25.763 hybrid contribution 0.397 0.302 0.003 0.499 sum -24.721 6.030 -0.096 25.446 Atomic orbital electron populations 1.20339 0.86339 1.04007 1.03392 1.21214 0.95338 0.86743 1.08766 1.43327 1.03019 1.09633 1.53331 0.70867 1.73795 1.00886 1.14805 1.16870 1.20822 0.92498 0.89642 1.12374 1.19531 0.82994 0.85329 0.73076 1.90823 1.87710 1.13978 1.46183 1.86639 1.14477 1.41931 1.82756 1.23561 0.81195 0.93470 1.02265 1.21761 0.91813 0.99000 1.02067 1.19055 0.89841 0.94706 0.97697 1.21188 0.90711 0.93149 1.50809 0.92424 1.25027 0.99226 0.94988 0.95259 1.69969 1.23798 1.08985 1.50681 0.86546 0.82599 0.80468 0.78117 1.20635 1.21214 1.19817 1.20100 0.90044 0.96940 1.07974 1.20232 1.01581 0.89474 1.02594 0.90240 0.91004 0.89450 0.91338 0.91332 0.92107 0.92106 0.96200 0.96184 0.92926 0.91202 0.91732 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.14 36.01 0.37 0.01 16 2 C 0.00 0.04 7.23 -82.21 -0.59 -0.56 16 3 N -0.38 -3.46 6.83 33.50 0.23 -3.23 16 4 H 0.45 2.22 8.96 -190.44 -1.71 0.51 16 5 N -0.23 -3.14 12.24 33.41 0.41 -2.73 16 6 C 0.01 0.08 7.17 -82.78 -0.59 -0.51 16 7 C 0.55 9.77 7.97 34.54 0.28 10.04 16 8 O -0.50 -9.43 14.90 -19.26 -0.29 -9.72 16 9 O -0.34 -6.55 10.23 -40.57 -0.42 -6.96 16 10 C 0.07 1.34 5.48 37.16 0.20 1.54 16 11 C -0.11 -2.38 5.53 -26.73 -0.15 -2.53 16 12 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 13 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 14 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 17 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.14 -1.68 6.25 -104.39 -0.65 -2.33 16 22 C -0.08 -0.82 9.61 36.01 0.35 -0.47 16 23 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 24 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 25 H 0.09 0.32 7.98 -51.93 -0.41 -0.09 16 26 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.02 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.47 8.00 -51.93 -0.42 0.05 16 35 H 0.08 1.02 6.70 -51.93 -0.35 0.67 16 LS Contribution 308.21 15.07 4.64 4.64 Total: -1.00 -34.29 308.21 -7.28 -41.57 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: -6.23 Total: -5.90 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -1.35 Total: -8.08 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 1.37 Total: -32.48 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.70 Total: -16.68 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.29 -7.28 -41.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734714084.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.340 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds