Wall clock time and date at job start Mon Mar 30 2020 03:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35041 * 126.37743 * 2 1 4 4 H 0.97004 * 124.88467 * 0.05806 * 3 2 1 5 5 N 1.28467 * 110.24215 * 180.02562 * 3 2 1 6 6 C 1.31858 * 110.06329 * 359.71260 * 5 3 2 7 7 C 1.47580 * 126.52786 * 180.28197 * 6 5 3 8 8 O 1.21491 * 120.00103 * 180.20158 * 7 6 5 9 9 O 1.34730 * 119.99681 * 0.18784 * 7 6 5 10 10 C 1.45199 * 116.99707 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47232 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47405 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47406 * 180.02562 * 12 11 10 14 14 H 1.07995 * 119.99779 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00103 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99846 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 119.99888 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47278 * 89.99692 * 17 15 13 19 19 H 1.48502 * 109.47244 * 209.99200 * 17 15 13 20 20 H 1.48495 * 109.47288 * 329.99602 * 17 15 13 21 21 C 1.35344 * 126.38062 * 180.02562 * 2 1 3 22 22 C 1.50703 * 127.24793 * 359.97438 * 21 2 1 23 23 H 1.08993 * 109.47091 * 269.97336 * 1 2 3 24 24 H 1.09001 * 109.47114 * 29.97502 * 1 2 3 25 25 H 1.09000 * 109.47179 * 149.97554 * 1 2 3 26 26 H 1.09003 * 109.47805 * 300.01002 * 10 9 7 27 27 H 1.09007 * 109.47006 * 60.00795 * 10 9 7 28 28 H 1.08996 * 109.47145 * 300.00590 * 11 10 9 29 29 H 1.08995 * 109.46739 * 60.00601 * 11 10 9 30 30 H 1.09009 * 109.47032 * 299.99894 * 12 11 10 31 31 H 1.08998 * 109.47551 * 59.99875 * 12 11 10 32 32 H 0.97007 * 119.99996 * 180.02562 * 16 15 13 33 33 H 1.09002 * 109.47152 * 89.99999 * 22 21 2 34 34 H 1.09001 * 109.46980 * 330.00099 * 22 21 2 35 35 H 1.09004 * 109.47113 * 210.00080 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3080 1.0873 0.0000 4 1 1.9963 2.0059 0.0008 5 7 3.5420 0.7302 -0.0005 6 6 3.6324 -0.5852 0.0053 7 6 4.8756 -1.3803 0.0126 8 8 4.8206 -2.5940 0.0138 9 8 6.0717 -0.7602 0.0176 10 6 7.2524 -1.6054 0.0252 11 6 8.5067 -0.7294 0.0306 12 6 9.7508 -1.6199 0.0380 13 6 10.9863 -0.7571 0.0440 14 1 10.8935 0.3189 0.0423 15 6 12.2352 -1.3413 0.0507 16 7 12.3482 -2.6515 0.0523 17 14 13.7666 -0.2717 0.0574 18 1 14.1654 0.0130 1.4593 19 1 14.8702 -0.9829 -0.6365 20 1 13.4816 1.0052 -0.6451 21 6 2.3098 -1.0896 -0.0005 22 6 1.8850 -2.5356 -0.0006 23 1 -0.3633 -0.0005 1.0276 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3633 -0.8898 -0.5142 26 1 7.2441 -2.2332 0.9162 27 1 7.2533 -2.2363 -0.8638 28 1 8.5151 -0.1013 -0.8602 29 1 8.5056 -0.0989 0.9197 30 1 9.7426 -2.2483 0.9288 31 1 9.7518 -2.2503 -0.8512 32 1 13.2268 -3.0626 0.0573 33 1 1.7823 -2.8840 -1.0283 34 1 0.9289 -2.6334 0.5136 35 1 2.6367 -3.1351 0.5129 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734714084.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:12 Heat of formation + Delta-G solvation = -59.511401 kcal Electronic energy + Delta-G solvation = -17580.258320 eV Core-core repulsion = 14578.397219 eV Total energy + Delta-G solvation = -3001.861101 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.85170 -41.26017 -37.86824 -35.95488 -34.54027 -33.86647 -33.42293 -29.64539 -28.91586 -27.09017 -26.23130 -24.63334 -22.18992 -21.48013 -21.09530 -18.84981 -18.53430 -18.16006 -17.82658 -17.35437 -16.79772 -16.49468 -15.54850 -14.88534 -14.71705 -14.19529 -14.01152 -13.90916 -13.89523 -13.78349 -13.58213 -13.06417 -13.02240 -12.83536 -12.52151 -12.41415 -12.10061 -11.99877 -11.76752 -11.45810 -11.44165 -11.24432 -10.57687 -10.50881 -9.73094 -8.22166 -6.33789 0.16034 0.97824 1.38241 1.42057 1.42722 1.54332 1.96596 2.06121 2.41352 3.11469 3.26335 3.68822 3.93699 3.98033 4.03135 4.19228 4.25565 4.39317 4.77610 4.78474 4.81162 4.87736 4.92023 4.96724 5.04709 5.08366 5.17772 5.28495 5.46960 5.53140 5.62746 5.79295 6.04766 6.18858 6.52597 6.80720 6.82779 7.35485 8.90198 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.054895 B = 0.003299 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.941318 B = 8485.557250 C = 8959.137355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.032 3.968 3 N -0.355 5.355 4 H 0.465 0.535 5 N -0.256 5.256 6 C -0.031 4.031 7 C 0.545 3.455 8 O -0.520 6.520 9 O -0.350 6.350 10 C 0.077 3.923 11 C -0.094 4.094 12 C 0.028 3.972 13 C -0.545 4.545 14 H 0.063 0.937 15 C -0.001 4.001 16 N -0.933 5.933 17 Si 0.970 3.030 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.262 1.262 21 C -0.164 4.164 22 C -0.078 4.078 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.064 0.936 30 H -0.001 1.001 31 H -0.001 1.001 32 H 0.265 0.735 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.998 7.162 -0.095 28.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 N -0.074 5.074 4 H 0.314 0.686 5 N -0.094 5.094 6 C -0.187 4.187 7 C 0.388 3.612 8 O -0.408 6.408 9 O -0.266 6.266 10 C 0.004 3.996 11 C -0.131 4.131 12 C -0.010 4.010 13 C -0.583 4.583 14 H 0.082 0.918 15 C -0.199 4.199 16 N -0.573 5.573 17 Si 0.794 3.206 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.187 1.187 21 C -0.173 4.173 22 C -0.136 4.136 23 H 0.116 0.884 24 H 0.116 0.884 25 H 0.117 0.883 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -27.153 7.572 -0.103 28.190 hybrid contribution 0.871 -0.235 0.006 0.902 sum -26.283 7.337 -0.096 27.288 Atomic orbital electron populations 1.20588 0.82444 1.05893 1.05085 1.21840 0.97173 0.85198 1.05204 1.43449 1.01893 1.11002 1.51092 0.68584 1.73690 1.03258 1.14342 1.18155 1.20706 0.92238 0.90430 1.15367 1.20064 0.83200 0.85598 0.72300 1.90798 1.87888 1.14827 1.47254 1.86617 1.14845 1.41895 1.83241 1.23239 0.81212 0.92923 1.02238 1.21461 0.90967 0.98304 1.02384 1.18926 0.91710 0.94693 0.95627 1.21617 0.91888 0.93746 1.51026 0.91843 1.26012 1.02925 0.96408 0.94528 1.70100 1.24897 1.10935 1.51373 0.85373 0.77949 0.78706 0.78573 1.19658 1.20624 1.18665 1.20439 0.89095 0.98643 1.09164 1.20231 1.02235 0.88183 1.02902 0.88432 0.88430 0.88310 0.91420 0.91422 0.91720 0.91693 0.98282 0.98267 0.92610 0.90839 0.88449 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.14 71.24 0.72 0.40 16 2 C 0.03 0.46 7.23 41.40 0.30 0.76 16 3 N -0.36 -5.69 6.83 -47.93 -0.33 -6.02 16 4 H 0.47 3.24 8.96 -219.99 -1.97 1.27 16 5 N -0.26 -6.90 12.24 -48.22 -0.59 -7.49 16 6 C -0.03 -0.95 7.17 42.42 0.30 -0.65 16 7 C 0.54 20.06 7.97 70.29 0.56 20.62 16 8 O -0.52 -20.45 14.90 19.87 0.30 -20.15 16 9 O -0.35 -13.77 10.23 -56.40 -0.58 -14.35 16 10 C 0.08 3.15 5.48 71.98 0.39 3.54 16 11 C -0.09 -4.18 5.53 30.59 0.17 -4.02 16 12 C 0.03 1.51 4.97 29.85 0.15 1.66 16 13 C -0.54 -31.82 9.11 25.60 0.23 -31.58 16 14 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16 15 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 16 N -0.93 -57.77 13.29 21.45 0.28 -57.49 16 17 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 21 C -0.16 -3.70 6.25 -19.72 -0.12 -3.82 16 22 C -0.08 -1.49 9.61 71.24 0.68 -0.81 16 23 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 24 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 25 H 0.10 0.26 7.98 -2.39 -0.02 0.24 16 26 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 28 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 31 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.27 15.35 8.31 -92.70 -0.77 14.57 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.10 1.15 8.00 -2.39 -0.02 1.13 16 35 H 0.06 1.40 6.70 -2.38 -0.02 1.38 16 Total: -1.00 -76.00 308.21 4.09 -71.91 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: -0.87 Total: 0.06 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: 3.85 Total: -13.48 kcal Atomic # 7 Polarization: -70.37 SS G_CDS: -0.63 Total: -71.00 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -0.28 Total: -34.50 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -76.00 4.09 -71.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734714084.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.396 kcal (2) G-P(sol) polarization free energy of solvation -76.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds