Wall clock time and date at job start Mon Mar 30 2020 03:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30179 * 126.80007 * 2 1 4 4 O 1.20921 * 111.60475 * 180.02562 * 3 2 1 5 5 C 1.34043 * 111.56808 * 359.76982 * 4 3 2 6 6 C 1.50701 * 126.77786 * 180.28125 * 5 4 3 7 7 C 1.35450 * 106.44586 * 0.37708 * 5 4 3 8 8 C 1.50697 * 128.00883 * 179.91101 * 7 5 4 9 9 C 1.52997 * 109.47466 * 269.67776 * 8 7 5 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 8 12 12 C 1.34779 * 119.99872 * 179.97438 * 11 10 9 13 13 O 1.21684 * 119.99938 * 359.97438 * 12 11 10 14 14 C 1.46375 * 119.99969 * 180.02562 * 12 11 10 15 15 H 1.08003 * 120.00289 * 359.97438 * 14 12 11 16 16 C 1.40045 * 120.00118 * 179.97438 * 14 12 11 17 17 N 1.30673 * 119.99924 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00255 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47245 * 89.99779 * 18 16 14 20 20 H 1.48508 * 109.47285 * 209.99997 * 18 16 14 21 21 H 1.48499 * 109.47170 * 329.99940 * 18 16 14 22 22 H 1.09000 * 109.47103 * 269.96753 * 1 2 3 23 23 H 1.08994 * 109.47245 * 29.97500 * 1 2 3 24 24 H 1.09005 * 109.46560 * 149.97336 * 1 2 3 25 25 H 1.09004 * 109.47130 * 270.10876 * 6 5 4 26 26 H 1.08995 * 109.47389 * 30.11147 * 6 5 4 27 27 H 1.08996 * 109.46909 * 150.11487 * 6 5 4 28 28 H 1.09002 * 109.47120 * 149.67529 * 8 7 5 29 29 H 1.08998 * 109.46862 * 29.68331 * 8 7 5 30 30 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 31 31 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 32 32 H 1.09001 * 109.47194 * 299.99650 * 10 9 8 33 33 H 1.08992 * 109.47399 * 59.99823 * 10 9 8 34 34 H 0.97005 * 120.00448 * 359.97438 * 11 10 9 35 35 H 0.97000 * 120.00256 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6025 -0.6067 0.0041 6 6 4.9022 -1.3694 0.0109 7 6 2.3540 -1.1320 -0.0008 8 6 1.9592 -2.5863 -0.0005 9 6 1.8242 -3.0786 -1.4428 10 6 1.4227 -4.5549 -1.4424 11 7 1.2941 -5.0264 -2.8235 12 6 0.9468 -6.3052 -3.0694 13 8 0.7406 -7.0683 -2.1443 14 6 0.8189 -6.7764 -4.4493 15 1 1.0024 -6.0992 -5.2705 16 6 0.4585 -8.1053 -4.7049 17 7 0.2370 -8.9248 -3.7115 18 14 0.2945 -8.7065 -6.4659 19 1 1.6024 -9.2321 -6.9334 20 1 -0.7234 -9.7860 -6.5277 21 1 -0.1258 -7.5794 -7.3366 22 1 -0.3633 -0.0006 1.0277 23 1 -0.3633 0.8901 -0.5134 24 1 -0.3632 -0.8898 -0.5143 25 1 5.2202 -1.5547 -1.0151 26 1 5.6637 -0.7850 0.5273 27 1 4.7629 -2.3201 0.5254 28 1 1.0056 -2.7038 0.5143 29 1 2.7233 -3.1701 0.5127 30 1 2.7779 -2.9611 -1.9575 31 1 1.0601 -2.4947 -1.9559 32 1 2.1866 -5.1391 -0.9291 33 1 0.4691 -4.6720 -0.9278 34 1 1.4589 -4.4182 -3.5610 35 1 -0.0122 -9.8454 -3.8885 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773272859.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:46 Heat of formation + Delta-G solvation = -4.713238 kcal Electronic energy + Delta-G solvation = -17798.467184 eV Core-core repulsion = 14798.982309 eV Total energy + Delta-G solvation = -2999.484874 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.97801 -37.50857 -36.20614 -34.19239 -33.51136 -32.40465 -31.09185 -28.78657 -28.08230 -26.72312 -25.17361 -22.10657 -21.04430 -20.18302 -19.60061 -17.73295 -17.08951 -16.96422 -15.30878 -15.30267 -14.80471 -14.20773 -14.00054 -13.79454 -13.59566 -13.33465 -13.09204 -12.74065 -12.68282 -12.42338 -12.30282 -12.14160 -11.61734 -11.14975 -11.11904 -10.95987 -10.86377 -10.45468 -10.44307 -10.21908 -9.87879 -9.16657 -8.84930 -7.61220 -7.49302 -6.18241 -4.63719 1.38179 2.12472 3.03304 3.14148 3.20989 3.24445 4.08672 4.11804 4.35803 4.59618 4.67897 4.76030 4.96937 5.12382 5.22022 5.23531 5.34330 5.39350 5.48705 5.53866 5.60864 5.67051 5.79013 5.81292 5.88128 6.01740 6.02993 6.20041 6.58725 6.59541 7.43666 7.93889 8.11228 8.20966 8.33596 9.02926 9.54522 10.60657 10.79306 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.038670 B = 0.003612 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.901610 B = 7751.046297 C = 7869.424879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.023 3.977 3 N -0.372 5.372 4 O 0.092 5.908 5 C -0.035 4.035 6 C -0.074 4.074 7 C -0.191 4.191 8 C -0.039 4.039 9 C -0.122 4.122 10 C 0.133 3.867 11 N -0.769 5.769 12 C 0.554 3.446 13 O -0.582 6.582 14 C -0.547 4.547 15 H 0.067 0.933 16 C 0.087 3.913 17 N -0.769 5.769 18 Si 0.907 3.093 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.265 1.265 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.380 0.620 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.544 15.063 6.105 17.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.136 4.136 3 N -0.078 5.078 4 O 0.028 5.972 5 C -0.098 4.098 6 C -0.131 4.131 7 C -0.195 4.195 8 C -0.078 4.078 9 C -0.160 4.160 10 C 0.008 3.992 11 N -0.425 5.425 12 C 0.357 3.643 13 O -0.465 6.465 14 C -0.584 4.584 15 H 0.085 0.915 16 C -0.132 4.132 17 N -0.398 5.398 18 Si 0.732 3.268 19 H -0.197 1.197 20 H -0.205 1.205 21 H -0.189 1.189 22 H 0.098 0.902 23 H 0.093 0.907 24 H 0.104 0.896 25 H 0.107 0.893 26 H 0.099 0.901 27 H 0.111 0.889 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.211 0.789 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.121 15.622 6.872 17.819 hybrid contribution -0.084 -0.694 -1.228 1.413 sum 5.037 14.928 5.645 16.736 Atomic orbital electron populations 1.20189 0.85996 1.03987 1.03324 1.23488 0.98948 0.88552 1.02611 1.73815 0.89351 1.24066 1.20604 1.84771 1.21618 1.22676 1.68156 1.24264 0.98362 0.83670 1.03529 1.20347 0.89882 0.98598 1.04263 1.21052 0.91482 0.97810 1.09159 1.19864 1.02533 0.87498 0.97871 1.21755 1.02034 0.96669 0.95516 1.20848 0.99988 0.91427 0.86924 1.46133 1.77724 1.13636 1.04991 1.18220 0.76522 0.78952 0.90562 1.90593 1.54853 1.54464 1.46581 1.20898 1.50144 0.96257 0.91063 0.91474 1.25706 0.92895 0.96494 0.98115 1.70022 1.33228 1.04704 1.31806 0.86381 0.78475 0.78879 0.83053 1.19748 1.20458 1.18934 0.90243 0.90662 0.89629 0.89294 0.90066 0.88870 0.90228 0.90272 0.91685 0.91712 0.93405 0.93415 0.78928 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.39 36.00 0.37 -0.38 16 2 C 0.02 0.28 7.33 -82.10 -0.60 -0.32 16 3 N -0.37 -5.13 12.07 33.42 0.40 -4.73 16 4 O 0.09 1.18 11.20 17.17 0.19 1.37 16 5 C -0.04 -0.38 7.49 -35.30 -0.26 -0.65 16 6 C -0.07 -0.54 10.30 36.01 0.37 -0.17 16 7 C -0.19 -2.24 5.58 -104.42 -0.58 -2.83 16 8 C -0.04 -0.44 5.54 -27.89 -0.15 -0.60 16 9 C -0.12 -1.62 5.31 -26.73 -0.14 -1.76 16 10 C 0.13 2.44 5.67 -4.04 -0.02 2.41 16 11 N -0.77 -17.01 5.55 -61.72 -0.34 -17.35 16 12 C 0.55 15.79 7.75 -12.99 -0.10 15.69 16 13 O -0.58 -18.91 15.02 5.20 0.08 -18.83 16 14 C -0.55 -15.47 9.54 -35.63 -0.34 -15.81 16 15 H 0.07 1.74 7.85 -52.48 -0.41 1.33 16 16 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 17 N -0.77 -23.10 11.83 55.55 0.66 -22.45 16 18 Si 0.91 20.09 29.56 -169.99 -5.02 15.06 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 0.61 7.43 -51.93 -0.39 0.23 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 0.81 7.44 -51.93 -0.39 0.43 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.38 7.36 8.45 -40.82 -0.35 7.02 16 35 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 LS Contribution 307.83 15.07 4.64 4.64 Total: -1.00 -35.58 307.83 -5.85 -41.42 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -4.89 Total: 2.92 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -1.56 Total: -2.05 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.72 Total: -44.53 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: 0.27 Total: -17.47 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.58 -5.85 -41.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773272859.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.711 kcal (2) G-P(sol) polarization free energy of solvation -35.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds