Wall clock time and date at job start Mon Mar 30 2020 03:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39872 * 125.89613 * 2 1 4 4 C 1.35314 * 107.91954 * 180.14407 * 3 2 1 5 5 C 1.50703 * 126.12759 * 179.90471 * 4 3 2 6 6 N 1.34949 * 107.74826 * 359.63758 * 4 3 2 7 7 C 1.46492 * 126.04227 * 180.20931 * 6 4 3 8 8 C 1.50701 * 109.47276 * 89.99694 * 7 6 4 9 9 O 1.20824 * 120.00127 * 0.02562 * 8 7 6 10 10 O 1.34227 * 120.00273 * 180.02562 * 8 7 6 11 11 C 1.45203 * 117.00445 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47357 * 180.02562 * 11 10 8 13 13 C 1.50701 * 109.47059 * 179.97438 * 12 11 10 14 14 H 1.08002 * 119.99552 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99737 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00087 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99648 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47293 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.47042 * 119.99542 * 17 15 13 20 20 H 1.48497 * 109.47006 * 239.99133 * 17 15 13 21 21 N 1.30835 * 125.89924 * 179.73974 * 2 1 3 22 22 H 1.08996 * 109.47154 * 270.23207 * 1 2 3 23 23 H 1.09001 * 109.47360 * 30.23828 * 1 2 3 24 24 H 1.08999 * 109.46997 * 150.23794 * 1 2 3 25 25 H 1.08000 * 126.03890 * 0.02562 * 3 2 1 26 26 H 1.09002 * 109.47152 * 269.68517 * 5 4 3 27 27 H 1.09001 * 109.46980 * 149.68618 * 5 4 3 28 28 H 1.09004 * 109.47113 * 29.68598 * 5 4 3 29 29 H 1.09001 * 109.47504 * 210.00369 * 7 6 4 30 30 H 1.09010 * 109.47188 * 330.00050 * 7 6 4 31 31 H 1.09000 * 109.46226 * 300.00114 * 11 10 8 32 32 H 1.08997 * 109.46722 * 59.99764 * 11 10 8 33 33 H 1.09001 * 109.46971 * 299.99827 * 12 11 10 34 34 H 1.08999 * 109.46859 * 59.99684 * 12 11 10 35 35 H 0.97007 * 119.99457 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0032 5 6 4.8350 1.5991 -0.0064 6 7 3.6088 -0.6340 0.0029 7 6 4.7899 -1.5006 0.0065 8 6 5.1955 -1.7913 1.4285 9 8 4.5625 -1.3230 2.3450 10 8 6.2598 -2.5704 1.6770 11 6 6.5920 -2.8081 3.0704 12 6 7.8247 -3.7105 3.1541 13 6 8.1697 -3.9567 4.6003 14 1 7.5700 -3.5134 5.3815 15 6 9.2516 -4.7468 4.9260 16 7 9.9821 -5.2862 3.9747 17 14 9.6797 -5.0513 6.7186 18 1 8.7102 -4.3368 7.5874 19 1 9.6186 -6.5079 7.0016 20 1 11.0509 -4.5512 6.9919 21 7 2.2742 -1.0598 0.0048 22 1 -0.3633 0.0042 1.0276 23 1 -0.3634 0.8878 -0.5175 24 1 -0.3633 -0.8921 -0.5101 25 1 1.9922 2.1598 0.0004 26 1 5.1300 1.8074 -1.0349 27 1 5.6508 1.0934 0.5102 28 1 4.6072 2.5354 0.5030 29 1 4.5563 -2.4354 -0.5031 30 1 5.6093 -1.0003 -0.5100 31 1 6.8038 -1.8578 3.5604 32 1 5.7515 -3.2934 3.5665 33 1 7.6133 -4.6608 2.6638 34 1 8.6649 -3.2247 2.6580 35 1 10.7431 -5.8424 4.2039 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805724682.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:17 Heat of formation + Delta-G solvation = -24.207003 kcal Electronic energy + Delta-G solvation = -17806.243389 eV Core-core repulsion = 14805.913201 eV Total energy + Delta-G solvation = -3000.330188 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.45206 -39.91456 -36.31538 -34.22868 -33.40572 -32.20691 -30.59208 -29.80907 -27.17089 -26.51221 -24.84186 -21.65563 -20.79046 -20.46013 -19.30727 -17.74270 -16.85218 -16.35296 -16.28572 -15.70391 -14.85079 -14.48159 -14.38526 -13.95519 -13.45513 -13.43174 -13.11211 -12.91418 -12.66091 -12.40767 -12.31029 -12.26867 -11.96205 -11.30289 -11.11041 -10.83117 -10.76042 -10.56994 -10.42338 -9.74609 -9.74158 -9.35511 -9.12401 -8.56583 -8.49280 -6.15047 -4.19622 1.65665 2.21074 2.34665 2.72649 3.15037 3.24820 3.32579 3.37876 4.33810 4.35405 4.47048 4.78051 4.89615 4.98277 5.02003 5.20927 5.21798 5.27805 5.49719 5.54311 5.62680 5.71450 5.77845 5.98481 6.00950 6.11370 6.55062 6.61523 6.82422 6.87121 7.49078 7.55379 7.67742 7.80567 8.03237 8.18418 8.85959 9.45217 10.96428 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.044515 B = 0.003575 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.852388 B = 7830.312369 C = 7979.089630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.074 3.926 3 C -0.272 4.272 4 C 0.097 3.903 5 C -0.096 4.096 6 N -0.361 5.361 7 C 0.141 3.859 8 C 0.436 3.564 9 O -0.499 6.499 10 O -0.354 6.354 11 C 0.077 3.923 12 C 0.025 3.975 13 C -0.527 4.527 14 H 0.060 0.940 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 N -0.287 5.287 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.147 0.853 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.527 12.625 -11.370 21.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.093 4.093 3 C -0.301 4.301 4 C -0.029 4.029 5 C -0.154 4.154 6 N -0.144 5.144 7 C 0.017 3.983 8 C 0.276 3.724 9 O -0.386 6.386 10 O -0.270 6.270 11 C 0.004 3.996 12 C -0.012 4.012 13 C -0.565 4.565 14 H 0.078 0.922 15 C -0.141 4.141 16 N -0.528 5.528 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 N -0.108 5.108 22 H 0.095 0.905 23 H 0.095 0.905 24 H 0.090 0.910 25 H 0.164 0.836 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.360 11.266 -11.074 20.058 hybrid contribution 0.369 0.593 1.201 1.389 sum -11.991 11.859 -9.873 19.542 Atomic orbital electron populations 1.20160 0.86680 1.03079 1.02987 1.22323 0.96911 0.90825 0.99205 1.21059 0.90844 0.99663 1.18510 1.21103 0.97530 0.84239 1.00041 1.20500 0.93159 0.98487 1.03280 1.47920 1.04698 1.03800 1.57947 1.20986 0.86167 0.98053 0.93061 1.23680 0.79473 0.77082 0.92143 1.90696 1.52523 1.48917 1.46506 1.86509 1.43766 1.61833 1.34874 1.23713 1.00300 1.00672 0.74886 1.19187 0.89948 0.94189 0.97896 1.21007 1.13079 1.31299 0.91162 0.92201 1.24983 0.95897 0.95363 0.97888 1.69982 1.18022 1.32665 1.32113 0.86407 0.78365 0.78103 0.84400 1.19579 1.20768 1.20786 1.77346 0.85808 1.22629 1.25048 0.90527 0.90524 0.90993 0.83563 0.89917 0.91066 0.89382 0.84583 0.84881 0.92222 0.92199 0.95250 0.95276 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.45 36.01 0.38 -0.26 16 2 C 0.07 0.98 7.22 -82.40 -0.59 0.39 16 3 C -0.27 -3.30 10.65 -40.01 -0.43 -3.72 16 4 C 0.10 1.21 6.93 -82.26 -0.57 0.64 16 5 C -0.10 -0.85 9.90 36.01 0.36 -0.49 16 6 N -0.36 -5.16 3.10 -58.31 -0.18 -5.34 16 7 C 0.14 1.77 6.66 -5.20 -0.03 1.73 16 8 C 0.44 7.57 8.03 36.01 0.29 7.86 16 9 O -0.50 -10.39 16.18 -18.75 -0.30 -10.69 16 10 O -0.35 -6.85 10.22 -39.25 -0.40 -7.25 16 11 C 0.08 1.70 5.40 37.16 0.20 1.90 16 12 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 13 C -0.53 -14.79 9.11 -34.44 -0.31 -15.11 16 14 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 17 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 N -0.29 -4.51 12.58 33.67 0.42 -4.08 16 22 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.68 7.72 -51.93 -0.40 0.27 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.14 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.13 1.16 7.66 -51.92 -0.40 0.76 16 31 H 0.06 1.31 8.13 -51.93 -0.42 0.88 16 32 H 0.06 1.34 8.13 -51.93 -0.42 0.92 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 312.27 15.07 4.71 4.71 Total: -1.00 -34.44 312.27 -5.99 -40.44 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -4.99 Total: -3.72 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -0.96 Total: -4.95 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.98 Total: -34.85 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.70 Total: -17.94 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.44 -5.99 -40.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805724682.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.229 kcal (2) G-P(sol) polarization free energy of solvation -34.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds