Wall clock time and date at job start Mon Mar 30 2020 03:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39862 * 126.04370 * 2 1 4 4 N 1.30843 * 108.20123 * 179.74319 * 3 2 1 5 5 N 1.40083 * 108.20683 * 0.40438 * 4 3 2 6 6 C 1.46502 * 126.03951 * 179.85527 * 5 4 3 7 7 C 1.53001 * 109.47042 * 304.68999 * 6 5 4 8 8 O 1.45193 * 109.47170 * 180.02562 * 7 6 5 9 9 C 1.34232 * 117.00228 * 180.02562 * 8 7 6 10 10 O 1.20823 * 119.99768 * 359.97438 * 9 8 7 11 11 C 1.50701 * 120.00224 * 180.02562 * 9 8 7 12 12 H 1.09000 * 109.47210 * 59.99118 * 11 9 8 13 13 C 1.53009 * 109.46677 * 299.99590 * 11 9 8 14 14 C 1.50691 * 109.47304 * 179.97438 * 11 9 8 15 15 H 1.08011 * 119.99994 * 5.63961 * 14 11 9 16 16 C 1.37871 * 120.00306 * 185.63815 * 14 11 9 17 17 N 1.31519 * 120.00387 * 197.14740 * 16 14 11 18 18 Si 1.86804 * 119.99901 * 17.42761 * 16 14 11 19 19 H 1.48495 * 109.47139 * 179.72427 * 18 16 14 20 20 H 1.48499 * 109.46650 * 299.72174 * 18 16 14 21 21 H 1.48501 * 109.46998 * 59.72245 * 18 16 14 22 22 C 1.34946 * 107.92296 * 359.59163 * 5 4 3 23 23 H 1.09004 * 109.47103 * 270.00476 * 1 2 3 24 24 H 1.09003 * 109.46485 * 29.99540 * 1 2 3 25 25 H 1.08991 * 109.47332 * 149.99584 * 1 2 3 26 26 H 1.08000 * 125.90510 * 0.02562 * 3 2 1 27 27 H 1.09000 * 109.46606 * 184.68982 * 6 5 4 28 28 H 1.08990 * 109.46796 * 64.69192 * 6 5 4 29 29 H 1.08997 * 109.47433 * 59.99718 * 7 6 5 30 30 H 1.09002 * 109.47199 * 300.00028 * 7 6 5 31 31 H 1.08998 * 109.46828 * 66.31858 * 13 11 9 32 32 H 1.08992 * 109.46594 * 186.31764 * 13 11 9 33 33 H 1.08996 * 109.46758 * 306.31684 * 13 11 9 34 34 H 0.97004 * 119.99724 * 355.22179 * 17 16 14 35 35 H 1.08004 * 126.12819 * 180.26521 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3300 1.1309 0.0000 4 7 3.5755 0.7300 0.0056 5 7 3.5844 -0.6708 -0.0001 6 6 4.7745 -1.5252 0.0003 7 6 5.6714 -1.1508 -1.1814 8 8 6.8506 -1.9980 -1.1813 9 6 7.7461 -1.7961 -2.1607 10 8 7.5507 -0.9402 -2.9909 11 6 8.9944 -2.6378 -2.2256 12 1 8.7199 -3.6873 -2.3319 13 6 9.8035 -2.4498 -0.9406 14 6 9.8251 -2.2139 -3.4093 15 1 9.5303 -1.3568 -3.9968 16 6 10.9614 -2.9200 -3.7424 17 7 11.8607 -2.3821 -4.5373 18 14 11.2202 -4.6439 -3.0710 19 1 12.5060 -5.1854 -3.5795 20 1 11.2551 -4.5971 -1.5872 21 1 10.1051 -5.5196 -3.5126 22 6 2.3031 -1.0943 -0.0001 23 1 -0.3633 0.0001 1.0277 24 1 -0.3632 0.8901 -0.5138 25 1 -0.3633 -0.8899 -0.5138 26 1 1.9953 2.1577 0.0004 27 1 4.4726 -2.5687 -0.0889 28 1 5.3227 -1.3839 0.9316 29 1 5.9733 -0.1073 -1.0922 30 1 5.1231 -1.2921 -2.1128 31 1 9.2472 -2.8599 -0.0978 32 1 10.7577 -2.9684 -1.0331 33 1 9.9819 -1.3873 -0.7758 34 1 11.6930 -1.5178 -4.9445 35 1 1.9722 -2.1224 0.0002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849850912.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:24 Heat of formation + Delta-G solvation = -18.655112 kcal Electronic energy + Delta-G solvation = -17827.375064 eV Core-core repulsion = 14827.285624 eV Total energy + Delta-G solvation = -3000.089439 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.38465 -39.78320 -36.25610 -34.20435 -33.96964 -31.85320 -31.28448 -29.67826 -26.34817 -24.93485 -24.15979 -22.62590 -20.94945 -20.33468 -19.76705 -17.52282 -17.18779 -16.49524 -16.12142 -15.95941 -14.95964 -14.55794 -14.09573 -13.81708 -13.48935 -13.37998 -13.21619 -12.80446 -12.75729 -12.19456 -12.10214 -11.88183 -11.80740 -11.51594 -11.16984 -10.70213 -10.57542 -10.30252 -10.22095 -9.85541 -9.63689 -9.36268 -8.97775 -8.52760 -8.30450 -6.57306 -4.17001 1.68872 2.15886 2.61828 3.07789 3.30727 3.35332 3.36573 3.54635 4.33971 4.40548 4.61222 4.71757 4.82362 5.04718 5.06802 5.17343 5.23557 5.46254 5.49557 5.51528 5.67225 5.78938 5.88125 5.94199 6.15613 6.38560 6.44477 6.48935 6.76880 6.82376 6.99336 7.16229 7.52779 7.74390 8.35892 8.63900 8.89462 9.52772 10.85558 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.053746 B = 0.003736 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.843307 B = 7493.302179 C = 7674.984136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.246 4.246 3 C 0.048 3.952 4 N -0.291 5.291 5 N -0.369 5.369 6 C 0.139 3.861 7 C 0.053 3.947 8 O -0.368 6.368 9 C 0.473 3.527 10 O -0.502 6.502 11 C 0.034 3.966 12 H 0.057 0.943 13 C -0.146 4.146 14 C -0.603 4.603 15 H 0.076 0.924 16 C 0.034 3.966 17 N -0.898 5.898 18 Si 1.042 2.958 19 H -0.282 1.282 20 H -0.271 1.271 21 H -0.281 1.281 22 C 0.057 3.943 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.182 0.818 27 H 0.108 0.892 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.271 0.729 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.586 -0.369 11.991 22.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.258 4.258 3 C -0.138 4.138 4 N -0.111 5.111 5 N -0.152 5.152 6 C 0.017 3.983 7 C -0.022 4.022 8 O -0.286 6.286 9 C 0.316 3.684 10 O -0.387 6.387 11 C 0.015 3.985 12 H 0.074 0.926 13 C -0.203 4.203 14 C -0.640 4.640 15 H 0.094 0.906 16 C -0.172 4.172 17 N -0.531 5.531 18 Si 0.870 3.130 19 H -0.207 1.207 20 H -0.197 1.197 21 H -0.207 1.207 22 C -0.089 4.089 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.199 0.801 27 H 0.126 0.874 28 H 0.116 0.884 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -17.188 -1.079 11.757 20.852 hybrid contribution -2.062 1.215 -0.230 2.404 sum -19.250 0.135 11.526 22.437 Atomic orbital electron populations 1.20034 0.89260 1.02148 1.01420 1.20160 0.97145 0.91869 1.16593 1.23843 0.89926 0.99892 1.00164 1.77422 1.21333 0.88731 1.23648 1.48431 1.05220 1.04785 1.56787 1.21448 0.83796 0.92962 1.00093 1.22910 0.85680 0.95768 0.97854 1.86508 1.30710 1.58686 1.52680 1.24842 0.83745 0.83083 0.76687 1.90549 1.75884 1.33094 1.39198 1.19073 0.86512 0.94934 0.98009 0.92579 1.22168 1.00734 1.01602 0.95827 1.21972 1.11116 1.17625 1.13306 0.90632 1.25780 0.91335 1.03686 0.96357 1.70843 1.31865 1.19569 1.30821 0.84091 0.76781 0.75482 0.76666 1.20737 1.19716 1.20715 1.22383 0.83884 1.00211 1.02413 0.92222 0.91883 0.92194 0.80072 0.87403 0.88449 0.90285 0.91351 0.94342 0.91305 0.93317 0.91891 0.80873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.37 36.01 0.37 -0.11 16 2 C -0.25 -2.44 6.10 -105.05 -0.64 -3.09 16 3 C 0.05 0.55 11.96 -17.37 -0.21 0.34 16 4 N -0.29 -4.11 12.42 30.62 0.38 -3.73 16 5 N -0.37 -4.57 3.68 -61.37 -0.23 -4.79 16 6 C 0.14 1.60 6.89 -4.04 -0.03 1.57 16 7 C 0.05 0.84 5.66 37.16 0.21 1.05 16 8 O -0.37 -6.82 10.15 -39.26 -0.40 -7.22 16 9 C 0.47 10.90 7.25 36.01 0.26 11.16 16 10 O -0.50 -13.18 15.22 -18.75 -0.29 -13.47 16 11 C 0.03 0.82 2.32 -92.92 -0.22 0.61 16 12 H 0.06 1.27 6.80 -51.93 -0.35 0.91 16 13 C -0.15 -3.08 8.80 37.16 0.33 -2.76 16 14 C -0.60 -17.28 8.63 -34.45 -0.30 -17.58 16 15 H 0.08 2.44 7.02 -52.48 -0.37 2.07 16 16 C 0.03 0.98 5.30 -17.82 -0.09 0.88 16 17 N -0.90 -27.46 13.70 55.43 0.76 -26.70 16 18 Si 1.04 23.96 26.29 -169.99 -4.47 19.49 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.27 -5.58 5.76 56.52 0.33 -5.25 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 22 C 0.06 0.57 11.36 -17.22 -0.20 0.37 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.18 1.50 8.06 -52.49 -0.42 1.08 16 27 H 0.11 0.94 8.07 -51.93 -0.42 0.52 16 28 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.08 1.39 8.13 -51.93 -0.42 0.96 16 30 H 0.07 1.12 8.13 -51.93 -0.42 0.70 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.48 4.88 -51.93 -0.25 1.23 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.27 8.36 8.73 -40.82 -0.36 8.00 16 35 H 0.17 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 302.77 15.07 4.56 4.56 Total: -1.00 -33.98 302.77 -5.03 -39.01 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -4.85 Total: 0.39 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -0.51 Total: -7.54 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.91 Total: -35.22 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.68 Total: -20.69 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -4.47 Total: 19.49 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.98 -5.03 -39.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849850912.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.355 kcal (2) G-P(sol) polarization free energy of solvation -33.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds