Wall clock time and date at job start Mon Mar 30 2020 03:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39862 * 126.04370 * 2 1 4 4 N 1.30843 * 108.20123 * 179.74319 * 3 2 1 5 5 N 1.40083 * 108.20683 * 0.40438 * 4 3 2 6 6 C 1.46502 * 126.03951 * 179.85527 * 5 4 3 7 7 C 1.53001 * 109.47042 * 304.68999 * 6 5 4 8 8 O 1.45193 * 109.47170 * 180.02562 * 7 6 5 9 9 C 1.34232 * 117.00228 * 180.02562 * 8 7 6 10 10 O 1.20823 * 119.99768 * 359.97438 * 9 8 7 11 11 C 1.50701 * 120.00224 * 180.02562 * 9 8 7 12 12 H 1.09000 * 109.47210 * 59.99118 * 11 9 8 13 13 C 1.53009 * 109.46677 * 299.99590 * 11 9 8 14 14 C 1.50691 * 109.47304 * 179.97438 * 11 9 8 15 15 H 1.08011 * 119.99994 * 5.63961 * 14 11 9 16 16 C 1.37871 * 120.00306 * 185.63815 * 14 11 9 17 17 N 1.31519 * 120.00387 * 197.14740 * 16 14 11 18 18 Si 1.86804 * 119.99901 * 17.42761 * 16 14 11 19 19 H 1.48495 * 109.47139 * 179.72427 * 18 16 14 20 20 H 1.48499 * 109.46650 * 299.72174 * 18 16 14 21 21 H 1.48501 * 109.46998 * 59.72245 * 18 16 14 22 22 C 1.34946 * 107.92296 * 359.59163 * 5 4 3 23 23 H 1.09004 * 109.47103 * 270.00476 * 1 2 3 24 24 H 1.09003 * 109.46485 * 29.99540 * 1 2 3 25 25 H 1.08991 * 109.47332 * 149.99584 * 1 2 3 26 26 H 1.08000 * 125.90510 * 0.02562 * 3 2 1 27 27 H 1.09000 * 109.46606 * 184.68982 * 6 5 4 28 28 H 1.08990 * 109.46796 * 64.69192 * 6 5 4 29 29 H 1.08997 * 109.47433 * 59.99718 * 7 6 5 30 30 H 1.09002 * 109.47199 * 300.00028 * 7 6 5 31 31 H 1.08998 * 109.46828 * 66.31858 * 13 11 9 32 32 H 1.08992 * 109.46594 * 186.31764 * 13 11 9 33 33 H 1.08996 * 109.46758 * 306.31684 * 13 11 9 34 34 H 0.97004 * 119.99724 * 355.22179 * 17 16 14 35 35 H 1.08004 * 126.12819 * 180.26521 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3300 1.1309 0.0000 4 7 3.5755 0.7300 0.0056 5 7 3.5844 -0.6708 -0.0001 6 6 4.7745 -1.5252 0.0003 7 6 5.6714 -1.1508 -1.1814 8 8 6.8506 -1.9980 -1.1813 9 6 7.7461 -1.7961 -2.1607 10 8 7.5507 -0.9402 -2.9909 11 6 8.9944 -2.6378 -2.2256 12 1 8.7199 -3.6873 -2.3319 13 6 9.8035 -2.4498 -0.9406 14 6 9.8251 -2.2139 -3.4093 15 1 9.5303 -1.3568 -3.9968 16 6 10.9614 -2.9200 -3.7424 17 7 11.8607 -2.3821 -4.5373 18 14 11.2202 -4.6439 -3.0710 19 1 12.5060 -5.1854 -3.5795 20 1 11.2551 -4.5971 -1.5872 21 1 10.1051 -5.5196 -3.5126 22 6 2.3031 -1.0943 -0.0001 23 1 -0.3633 0.0001 1.0277 24 1 -0.3632 0.8901 -0.5138 25 1 -0.3633 -0.8899 -0.5138 26 1 1.9953 2.1577 0.0004 27 1 4.4726 -2.5687 -0.0889 28 1 5.3227 -1.3839 0.9316 29 1 5.9733 -0.1073 -1.0922 30 1 5.1231 -1.2921 -2.1128 31 1 9.2472 -2.8599 -0.0978 32 1 10.7577 -2.9684 -1.0331 33 1 9.9819 -1.3873 -0.7758 34 1 11.6930 -1.5178 -4.9445 35 1 1.9722 -2.1224 0.0002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849850912.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:24 Heat of formation + Delta-G solvation = -41.515085 kcal Electronic energy + Delta-G solvation = -17828.366346 eV Core-core repulsion = 14827.285624 eV Total energy + Delta-G solvation = -3001.080722 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.21723 -41.51881 -37.90749 -36.01912 -35.18484 -33.34236 -32.57890 -30.70956 -27.17938 -26.89757 -25.50168 -24.15754 -21.86563 -21.52364 -21.15054 -19.60907 -18.66464 -17.81918 -17.53525 -17.43773 -16.17749 -15.73959 -15.46289 -15.12495 -14.82817 -14.64147 -14.19171 -14.01195 -13.91614 -13.70873 -13.38992 -13.25959 -12.98363 -12.88827 -12.70820 -12.38759 -12.06540 -11.82552 -11.60421 -11.45401 -11.25847 -11.05129 -10.51855 -10.45179 -9.30058 -8.87102 -6.48082 0.84209 1.19283 1.24467 1.50525 1.59800 1.76976 1.84003 1.99403 2.50951 3.01704 3.38123 3.62115 3.85499 3.95687 4.02109 4.11543 4.33242 4.36896 4.48013 4.48637 4.59062 4.63913 4.83961 4.90172 5.02289 5.04673 5.24078 5.25696 5.30759 5.44793 5.70491 5.72761 5.97615 6.07491 6.48951 6.69447 6.84292 7.33464 8.54918 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.053746 B = 0.003736 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.843307 B = 7493.302179 C = 7674.984136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.255 4.255 3 C 0.042 3.958 4 N -0.347 5.347 5 N -0.383 5.383 6 C 0.148 3.852 7 C 0.055 3.945 8 O -0.347 6.347 9 C 0.477 3.523 10 O -0.548 6.548 11 C 0.027 3.973 12 H 0.085 0.915 13 C -0.139 4.139 14 C -0.615 4.615 15 H 0.017 0.983 16 C -0.016 4.016 17 N -0.930 5.930 18 Si 1.085 2.915 19 H -0.289 1.289 20 H -0.223 1.223 21 H -0.256 1.256 22 C 0.058 3.942 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.201 0.799 27 H 0.146 0.854 28 H 0.106 0.894 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.034 0.966 34 H 0.249 0.751 35 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.577 -3.127 14.641 26.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.266 4.266 3 C -0.144 4.144 4 N -0.168 5.168 5 N -0.167 5.167 6 C 0.027 3.973 7 C -0.020 4.020 8 O -0.263 6.263 9 C 0.322 3.678 10 O -0.437 6.437 11 C 0.007 3.993 12 H 0.103 0.897 13 C -0.197 4.197 14 C -0.653 4.653 15 H 0.036 0.964 16 C -0.214 4.214 17 N -0.565 5.565 18 Si 0.902 3.098 19 H -0.215 1.215 20 H -0.146 1.146 21 H -0.181 1.181 22 C -0.087 4.087 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.218 0.782 27 H 0.164 0.836 28 H 0.124 0.876 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -19.229 -3.814 14.447 24.352 hybrid contribution -1.585 2.206 -1.092 2.928 sum -20.814 -1.607 13.354 24.782 Atomic orbital electron populations 1.20085 0.87061 1.03043 1.02316 1.20609 0.98690 0.91324 1.15974 1.24350 0.89628 1.01474 0.98977 1.77367 1.23088 0.90260 1.26058 1.48507 1.06119 1.04323 1.57712 1.21481 0.83249 0.94643 0.97908 1.23092 0.84841 0.94175 0.99908 1.86439 1.30923 1.58535 1.50401 1.24694 0.84259 0.82145 0.76701 1.90546 1.76954 1.35004 1.41177 1.19065 0.86760 0.96204 0.97261 0.89736 1.22077 1.00800 1.01242 0.95553 1.22046 1.12472 1.15947 1.14808 0.96412 1.27557 0.90644 1.07602 0.95598 1.71002 1.33510 1.18995 1.32950 0.83662 0.77210 0.69829 0.79085 1.21479 1.14614 1.18062 1.23071 0.82787 1.02002 1.00811 0.91243 0.91368 0.90974 0.78226 0.83621 0.87555 0.92796 0.92261 0.89811 0.91237 0.94657 0.94177 0.77185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.37 71.24 0.74 0.01 16 2 C -0.25 -4.50 6.10 -20.14 -0.12 -4.63 16 3 C 0.04 0.91 11.96 85.23 1.02 1.93 16 4 N -0.35 -9.72 12.42 -57.02 -0.71 -10.42 16 5 N -0.38 -8.80 3.68 -348.06 -1.28 -10.07 16 6 C 0.15 3.04 6.89 86.38 0.60 3.64 16 7 C 0.06 1.71 5.66 71.98 0.41 2.12 16 8 O -0.35 -12.21 10.15 -51.43 -0.52 -12.74 16 9 C 0.48 21.87 7.25 71.24 0.52 22.39 16 10 O -0.55 -29.93 15.22 21.97 0.33 -29.60 16 11 C 0.03 1.24 2.32 -12.29 -0.03 1.21 16 12 H 0.09 3.49 6.80 -2.39 -0.02 3.48 16 13 C -0.14 -5.47 8.80 71.99 0.63 -4.84 16 14 C -0.62 -36.22 8.63 25.60 0.22 -36.00 16 15 H 0.02 1.21 7.02 -2.91 -0.02 1.19 16 16 C -0.02 -0.94 5.30 84.65 0.45 -0.49 16 17 N -0.93 -58.93 13.70 21.45 0.29 -58.64 16 18 Si 1.08 46.01 26.29 68.60 1.80 47.81 16 19 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.22 -7.77 5.76 99.48 0.57 -7.20 16 21 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 22 C 0.06 0.99 11.36 83.54 0.95 1.94 16 23 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 24 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.20 3.17 8.06 -2.91 -0.02 3.15 16 27 H 0.15 1.88 8.07 -2.39 -0.02 1.86 16 28 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.05 1.95 8.13 -2.39 -0.02 1.93 16 30 H 0.06 1.94 8.13 -2.39 -0.02 1.92 16 31 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.07 2.72 4.88 -2.39 -0.01 2.71 16 33 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.25 16.39 8.73 -92.71 -0.81 15.59 16 35 H 0.21 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -79.43 302.77 6.21 -73.22 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.91 Total: 13.17 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: 5.38 Total: -12.73 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -1.69 Total: -79.14 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -0.19 Total: -42.34 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.80 Total: 47.81 kcal Total: -79.43 6.21 -73.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849850912.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.705 kcal (2) G-P(sol) polarization free energy of solvation -79.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds