Wall clock time and date at job start Mon Mar 30 2020 03:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30836 * 125.89591 * 2 1 4 4 N 1.40077 * 108.20799 * 179.97438 * 3 2 1 5 5 C 1.46497 * 126.04083 * 179.97438 * 4 3 2 6 6 C 1.34952 * 107.92254 * 0.02562 * 4 3 2 7 7 C 1.35316 * 107.74600 * 359.74216 * 6 4 3 8 8 C 1.50702 * 126.03889 * 180.27396 * 7 6 4 9 9 O 1.45199 * 109.47297 * 0.14987 * 8 7 6 10 10 C 1.34228 * 116.99838 * 179.97438 * 9 8 7 11 11 O 1.20823 * 120.00263 * 359.97438 * 10 9 8 12 12 C 1.50704 * 119.99689 * 179.97438 * 10 9 8 13 13 H 1.08993 * 109.46994 * 299.99837 * 12 10 9 14 14 C 1.52999 * 109.46979 * 60.00185 * 12 10 9 15 15 C 1.50699 * 109.46606 * 179.97438 * 12 10 9 16 16 H 1.07995 * 120.00292 * 359.97438 * 15 12 10 17 17 C 1.37880 * 119.99614 * 180.02562 * 15 12 10 18 18 N 1.31517 * 120.00220 * 180.02562 * 17 15 12 19 19 Si 1.86804 * 120.00002 * 359.97438 * 17 15 12 20 20 H 1.48496 * 109.47196 * 90.00160 * 19 17 15 21 21 H 1.48505 * 109.46916 * 210.00195 * 19 17 15 22 22 H 1.48496 * 109.47076 * 329.99880 * 19 17 15 23 23 H 1.08999 * 109.46995 * 90.02443 * 1 2 3 24 24 H 1.08994 * 109.46790 * 210.02130 * 1 2 3 25 25 H 1.08997 * 109.47305 * 330.02571 * 1 2 3 26 26 H 1.09002 * 109.46771 * 89.98253 * 5 4 3 27 27 H 1.09007 * 109.47331 * 209.97653 * 5 4 3 28 28 H 1.08994 * 109.47325 * 329.98338 * 5 4 3 29 29 H 1.08002 * 126.12743 * 179.97438 * 6 4 3 30 30 H 1.09004 * 109.46768 * 120.14732 * 8 7 6 31 31 H 1.08998 * 109.47345 * 240.14297 * 8 7 6 32 32 H 1.09003 * 109.46791 * 299.99515 * 14 12 10 33 33 H 1.09000 * 109.47942 * 59.99442 * 14 12 10 34 34 H 1.09003 * 109.47200 * 180.02562 * 14 12 10 35 35 H 0.96993 * 120.00038 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6343 0.0006 5 6 4.7898 1.5010 0.0003 6 6 3.6143 -0.7152 0.0004 7 6 2.3272 -1.1329 0.0055 8 6 1.8601 -2.5657 0.0130 9 8 3.0115 -3.4502 0.0175 10 6 2.7662 -4.7699 0.0249 11 8 1.6270 -5.1726 0.0280 12 6 3.9117 -5.7492 0.0295 13 1 4.5210 -5.5996 -0.8618 14 6 4.7689 -5.5256 1.2769 15 6 3.3701 -7.1555 0.0382 16 1 2.3032 -7.3233 0.0407 17 6 4.2367 -8.2279 0.0441 18 7 3.7641 -9.4552 0.0512 19 14 6.0820 -7.9376 0.0405 20 1 6.5724 -7.8519 1.4395 21 1 6.7587 -9.0628 -0.6532 22 1 6.3818 -6.6673 -0.6678 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3633 -0.8898 0.5141 25 1 -0.3634 0.8902 0.5134 26 1 5.0823 1.7168 1.0279 27 1 5.6096 0.9979 -0.5127 28 1 4.5565 2.4329 -0.5145 29 1 4.4892 -1.3484 0.0003 30 1 1.2590 -2.7472 0.9040 31 1 1.2588 -2.7565 -0.8759 32 1 5.1605 -4.5083 1.2709 33 1 4.1595 -5.6750 2.1682 34 1 5.5976 -6.2336 1.2799 35 1 4.3738 -10.2096 0.0550 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849852242.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:05 Heat of formation + Delta-G solvation = -32.450586 kcal Electronic energy + Delta-G solvation = -18225.450247 eV Core-core repulsion = 15224.762591 eV Total energy + Delta-G solvation = -3000.687656 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.32190 -41.27152 -37.56836 -35.92954 -35.03247 -33.43841 -32.15273 -30.50561 -28.11222 -27.14680 -25.80226 -24.73855 -22.09247 -21.14077 -20.52236 -18.95113 -18.02552 -17.91171 -17.43692 -17.09235 -16.45472 -16.18166 -15.17195 -15.12301 -14.82739 -14.50767 -14.19950 -14.01414 -13.97220 -13.76926 -13.35925 -12.98898 -12.98713 -12.86957 -12.72476 -12.57531 -12.21344 -11.80979 -11.73766 -11.47559 -11.25524 -11.01462 -10.74526 -10.21551 -9.35644 -8.28974 -6.39319 0.85646 1.35640 1.42975 1.43789 1.54111 1.59699 1.62034 1.83029 2.34546 3.04462 3.49903 3.86525 4.01730 4.15716 4.26004 4.36990 4.40337 4.41317 4.45548 4.47989 4.59027 4.70051 4.72437 4.78632 4.96068 4.98131 5.06308 5.07580 5.39325 5.44139 5.53653 5.63475 6.07328 6.24290 6.66438 6.73230 7.02275 7.25804 8.87911 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.033010 B = 0.004935 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.029483 B = 5672.630184 C = 6413.040753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.079 3.921 3 N -0.326 5.326 4 N -0.379 5.379 5 C 0.093 3.907 6 C 0.085 3.915 7 C -0.267 4.267 8 C 0.151 3.849 9 O -0.352 6.352 10 C 0.481 3.519 11 O -0.540 6.540 12 C 0.020 3.980 13 H 0.082 0.918 14 C -0.140 4.140 15 C -0.533 4.533 16 H 0.036 0.964 17 C 0.014 3.986 18 N -0.947 5.947 19 Si 0.955 3.045 20 H -0.258 1.258 21 H -0.298 1.298 22 H -0.230 1.230 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.114 0.886 28 H 0.094 0.906 29 H 0.201 0.799 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.737 22.625 0.305 23.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 N -0.149 5.149 4 N -0.160 5.160 5 C -0.046 4.046 6 C -0.062 4.062 7 C -0.279 4.279 8 C 0.076 3.924 9 O -0.269 6.269 10 C 0.325 3.675 11 O -0.429 6.429 12 C 0.001 3.999 13 H 0.099 0.901 14 C -0.197 4.197 15 C -0.570 4.570 16 H 0.055 0.945 17 C -0.183 4.183 18 N -0.586 5.586 19 Si 0.779 3.221 20 H -0.183 1.183 21 H -0.225 1.225 22 H -0.153 1.153 23 H 0.108 0.892 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.106 0.894 27 H 0.132 0.868 28 H 0.112 0.888 29 H 0.218 0.782 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.602 23.772 0.310 24.216 hybrid contribution 0.104 -1.533 0.001 1.536 sum 4.706 22.239 0.311 22.734 Atomic orbital electron populations 1.20332 0.84881 1.04195 1.04097 1.22506 0.98158 0.89110 0.98951 1.77218 0.87613 1.23005 1.27108 1.48744 1.05875 1.05187 1.56209 1.22239 0.82707 0.94886 1.04796 1.22687 0.99810 0.84897 0.98802 1.19717 0.93844 0.93714 1.20596 1.20886 0.85845 0.83725 1.01955 1.86418 1.38913 1.17301 1.84231 1.24234 0.91343 0.81546 0.70356 1.90547 1.25906 1.79835 1.46625 1.19072 0.91218 0.90361 0.99237 0.90067 1.22011 0.98728 1.02032 0.96915 1.21046 0.94360 0.89458 1.52183 0.94546 1.25941 1.04862 0.94081 0.93447 1.70046 1.37632 0.99494 1.51403 0.85772 0.78022 0.78859 0.79423 1.18317 1.22524 1.15256 0.89249 0.89817 0.89776 0.89393 0.86794 0.88765 0.78244 0.91159 0.91189 0.89436 0.93165 0.93034 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.26 71.24 0.73 -0.72 16 2 C 0.08 2.01 7.22 43.10 0.31 2.32 16 3 N -0.33 -8.55 12.57 -47.38 -0.60 -9.15 16 4 N -0.38 -8.21 4.01 -369.56 -1.48 -9.70 16 5 C 0.09 1.04 11.47 127.77 1.47 2.51 16 6 C 0.09 1.99 10.82 83.54 0.90 2.89 16 7 C -0.27 -7.21 6.08 -20.14 -0.12 -7.33 16 8 C 0.15 4.62 5.65 71.24 0.40 5.02 16 9 O -0.35 -12.23 9.41 -51.40 -0.48 -12.71 16 10 C 0.48 21.10 7.25 71.24 0.52 21.62 16 11 O -0.54 -27.81 15.21 21.97 0.33 -27.47 16 12 C 0.02 0.93 2.33 -12.29 -0.03 0.90 16 13 H 0.08 3.42 7.20 -2.39 -0.02 3.40 16 14 C -0.14 -5.30 8.60 71.98 0.62 -4.68 16 15 C -0.53 -30.97 8.95 25.60 0.23 -30.74 16 16 H 0.04 2.48 7.00 -2.91 -0.02 2.46 16 17 C 0.01 0.81 5.45 84.65 0.46 1.27 16 18 N -0.95 -59.19 13.96 21.45 0.30 -58.89 16 19 Si 0.95 41.56 24.37 68.60 1.67 43.23 16 20 H -0.26 -10.44 6.87 99.48 0.68 -9.75 16 21 H -0.30 -13.07 7.11 99.48 0.71 -12.37 16 22 H -0.23 -8.65 6.53 99.48 0.65 -8.00 16 23 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.08 1.49 7.96 -2.39 -0.02 1.47 16 25 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.11 0.70 8.14 -2.38 -0.02 0.69 16 28 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.20 3.74 7.84 -2.91 -0.02 3.71 16 30 H 0.07 2.17 8.13 -2.39 -0.02 2.15 16 31 H 0.07 2.16 8.13 -2.39 -0.02 2.14 16 32 H 0.09 2.56 8.11 -2.39 -0.02 2.54 16 33 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.05 1.95 3.27 -2.39 -0.01 1.95 16 35 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -76.21 298.94 6.24 -69.97 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 1.01 Total: 11.66 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 5.49 Total: -6.94 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -1.78 Total: -77.73 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -0.15 Total: -40.18 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 1.67 Total: 43.23 kcal Total: -76.21 6.24 -69.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849852242.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.516 kcal (2) G-P(sol) polarization free energy of solvation -76.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds