Wall clock time and date at job start Mon Mar 30 2020 03:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35353 * 126.37713 * 2 1 4 4 C 1.41548 * 105.50116 * 180.15681 * 3 2 1 5 5 C 1.47583 * 126.52232 * 179.87479 * 4 3 2 6 6 O 1.21485 * 120.00085 * 359.71475 * 5 4 3 7 7 O 1.34729 * 119.99683 * 179.71451 * 5 4 3 8 8 C 1.45206 * 116.99812 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46777 * 179.97438 * 8 7 5 10 10 C 1.53006 * 109.46997 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47240 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99962 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31522 * 120.00243 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99980 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47195 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46997 * 120.00167 * 15 13 11 18 18 H 1.48500 * 109.47074 * 240.00161 * 15 13 11 19 19 N 1.31855 * 106.95087 * 359.61527 * 4 3 2 20 20 N 1.28469 * 110.06510 * 0.23955 * 19 4 3 21 21 C 1.46497 * 124.87883 * 179.97438 * 20 19 4 22 22 H 1.08993 * 109.47906 * 270.26278 * 1 2 3 23 23 H 1.09006 * 109.47040 * 30.26272 * 1 2 3 24 24 H 1.09007 * 109.46968 * 150.25839 * 1 2 3 25 25 H 1.08003 * 127.25111 * 0.03547 * 3 2 1 26 26 H 1.09000 * 109.47070 * 300.00016 * 8 7 5 27 27 H 1.09001 * 109.46626 * 60.00033 * 8 7 5 28 28 H 1.09000 * 109.47486 * 299.99948 * 9 8 7 29 29 H 1.09001 * 109.47362 * 60.00671 * 9 8 7 30 30 H 1.09000 * 109.46866 * 300.00212 * 10 9 8 31 31 H 1.08996 * 109.47261 * 59.99820 * 10 9 8 32 32 H 0.96992 * 120.00032 * 179.97438 * 14 13 11 33 33 H 1.09005 * 109.46946 * 90.03145 * 21 20 19 34 34 H 1.09005 * 109.47114 * 210.02229 * 21 20 19 35 35 H 1.08996 * 109.47245 * 330.02284 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3097 1.0898 0.0000 4 6 3.6323 0.5854 -0.0037 5 6 4.8756 1.3805 -0.0078 6 8 4.8204 2.5941 -0.0134 7 8 6.0717 0.7605 -0.0053 8 6 7.2523 1.6058 -0.0089 9 6 8.5067 0.7297 -0.0047 10 6 9.7508 1.6204 -0.0079 11 6 10.9863 0.7576 -0.0044 12 1 10.8935 -0.3185 -0.0007 13 6 12.2351 1.3418 -0.0070 14 7 12.3482 2.6522 -0.0120 15 14 13.7667 0.2723 -0.0019 16 1 13.3710 -1.1589 0.0041 17 1 14.5735 0.5573 -1.2157 18 1 14.5732 0.5684 1.2093 19 7 3.5420 -0.7301 0.0028 20 7 2.3080 -1.0872 0.0051 21 6 1.8374 -2.4745 0.0116 22 1 -0.3634 0.0047 1.0275 23 1 -0.3633 0.8877 -0.5179 24 1 -0.3633 -0.8924 -0.5099 25 1 2.0053 2.1260 0.0005 26 1 7.2486 2.2313 -0.9016 27 1 7.2486 2.2388 0.8784 28 1 8.5103 0.1045 0.8881 29 1 8.5106 0.0964 -0.8919 30 1 9.7474 2.2459 -0.9006 31 1 9.7468 2.2535 0.8793 32 1 13.2267 3.0631 -0.0135 33 1 1.7207 -2.8138 1.0409 34 1 0.8777 -2.5351 -0.5018 35 1 2.5634 -3.1069 -0.4994 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919587736.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:16 Heat of formation + Delta-G solvation = -23.347640 kcal Electronic energy + Delta-G solvation = -17451.153129 eV Core-core repulsion = 14450.860206 eV Total energy + Delta-G solvation = -3000.292923 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 252.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.91104 -39.80684 -36.30725 -34.00320 -33.77739 -32.95861 -31.61857 -28.19541 -27.51011 -26.73385 -24.08780 -22.66747 -21.22026 -20.31343 -19.73688 -17.24481 -16.99397 -16.76701 -16.36439 -15.97863 -15.72785 -14.45132 -14.42373 -13.97294 -13.67489 -13.55895 -13.16945 -12.98955 -12.88733 -12.55786 -12.13724 -12.01745 -11.80858 -10.98948 -10.94359 -10.67114 -10.56752 -10.41231 -10.29726 -9.64526 -9.46220 -9.35917 -9.16635 -9.09598 -8.34418 -5.99112 -4.01674 1.35289 1.81954 2.13795 2.99258 3.25237 3.33322 3.40486 3.45398 4.09460 4.28062 4.47590 4.59396 4.69028 4.76700 4.96344 5.08201 5.28719 5.35605 5.36872 5.41324 5.64416 5.67447 5.72160 6.07480 6.16102 6.47858 6.57537 6.63135 6.90481 7.06324 7.63575 7.66712 7.77998 7.99919 8.07894 8.41652 9.04939 9.62336 11.12477 Molecular weight = 252.13amu Principal moments of inertia in cm(-1) A = 0.047664 B = 0.003255 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.306332 B = 8601.075348 C = 9152.026891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.005 3.995 3 C -0.175 4.175 4 C 0.002 3.998 5 C 0.550 3.450 6 O -0.504 6.504 7 O -0.343 6.343 8 C 0.068 3.932 9 C -0.108 4.108 10 C 0.023 3.977 11 C -0.519 4.519 12 H 0.058 0.942 13 C 0.056 3.944 14 N -0.895 5.895 15 Si 0.895 3.105 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 N -0.232 5.232 20 N -0.281 5.281 21 C 0.084 3.916 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.070 0.930 25 H 0.165 0.835 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.260 0.740 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.327 -8.325 -0.006 27.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 C -0.202 4.202 4 C -0.156 4.156 5 C 0.392 3.608 6 O -0.390 6.390 7 O -0.258 6.258 8 C -0.005 4.005 9 C -0.146 4.146 10 C -0.014 4.014 11 C -0.557 4.557 12 H 0.076 0.924 13 C -0.145 4.145 14 N -0.534 5.534 15 Si 0.722 3.278 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 N -0.069 5.069 20 N -0.071 5.071 21 C -0.056 4.056 22 H 0.098 0.902 23 H 0.105 0.895 24 H 0.089 0.911 25 H 0.183 0.817 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -25.538 -8.902 -0.004 27.045 hybrid contribution 0.523 0.307 0.013 0.607 sum -25.015 -8.595 0.009 26.450 Atomic orbital electron populations 1.20346 0.86420 1.03896 1.03353 1.21420 0.95550 0.86579 1.08313 1.21506 0.89887 0.99851 1.08991 1.20862 0.92746 0.89702 1.12243 1.19545 0.83022 0.85287 0.72962 1.90843 1.87830 1.14064 1.46297 1.86639 1.14475 1.41902 1.82770 1.23562 0.81225 0.93481 1.02267 1.21760 0.91804 0.98987 1.02056 1.19063 0.89863 0.94722 0.97713 1.21226 0.90695 0.93181 1.50643 0.92371 1.25034 0.99237 0.94988 0.95280 1.69980 1.23685 1.08975 1.50797 0.86494 0.83004 0.80705 0.77559 1.19674 1.21002 1.20996 1.73792 1.01011 1.14819 1.17241 1.45483 1.02894 1.07767 1.50971 1.22199 1.01608 0.77135 1.04657 0.90250 0.89474 0.91121 0.81730 0.91343 0.91353 0.92111 0.92108 0.96185 0.96178 0.92985 0.89475 0.88604 0.88178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.10 36.00 0.36 -0.01 16 2 C 0.00 0.04 6.92 -82.21 -0.57 -0.52 16 3 C -0.18 -2.15 10.73 -39.35 -0.42 -2.57 16 4 C 0.00 0.03 7.17 -82.78 -0.59 -0.56 16 5 C 0.55 10.09 7.97 34.54 0.28 10.37 16 6 O -0.50 -9.99 16.72 -19.25 -0.32 -10.32 16 7 O -0.34 -6.68 10.23 -40.57 -0.42 -7.09 16 8 C 0.07 1.35 5.48 37.16 0.20 1.56 16 9 C -0.11 -2.39 5.53 -26.73 -0.15 -2.54 16 10 C 0.02 0.62 4.97 -27.88 -0.14 0.49 16 11 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 12 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 15 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 19 N -0.23 -3.40 11.99 33.41 0.40 -3.00 16 20 N -0.28 -2.91 3.70 -63.85 -0.24 -3.15 16 21 C 0.08 0.42 11.11 59.85 0.66 1.09 16 22 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 23 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.07 0.19 7.00 -51.92 -0.36 -0.17 16 25 H 0.17 1.76 8.06 -52.48 -0.42 1.34 16 26 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.10 0.19 6.95 -51.93 -0.36 -0.17 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 310.77 15.07 4.68 4.68 Total: -1.00 -35.28 310.77 -5.86 -41.14 By element: Atomic # 1 Polarization: -1.20 SS G_CDS: -4.92 Total: -6.12 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -0.77 Total: -6.51 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.90 Total: -32.75 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.74 Total: -17.41 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.28 -5.86 -41.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919587736.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.793 kcal (2) G-P(sol) polarization free energy of solvation -35.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds