Wall clock time and date at job start Mon Mar 30 2020 04:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46851 * 2 1 4 4 N 1.46902 * 109.47270 * 120.00037 * 2 1 3 5 5 C 1.46894 * 110.99963 * 70.00333 * 4 2 1 6 6 C 1.50708 * 109.46986 * 76.53210 * 5 4 2 7 7 H 1.08000 * 119.99920 * 355.17460 * 6 5 4 8 8 C 1.37876 * 120.00000 * 175.17252 * 6 5 4 9 9 N 1.31519 * 119.99756 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00173 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46910 * 59.99903 * 10 8 6 12 12 H 1.48496 * 109.47307 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47092 * 300.00291 * 10 8 6 14 14 C 1.46904 * 110.99976 * 306.04897 * 4 2 1 15 15 H 1.08998 * 109.47062 * 318.89375 * 14 4 2 16 16 C 1.53001 * 109.47207 * 198.89532 * 14 4 2 17 17 N 1.46903 * 109.47103 * 55.95873 * 16 14 4 18 18 C 1.50699 * 109.46996 * 78.89719 * 14 4 2 19 19 C 1.34511 * 125.78810 * 227.09238 * 18 14 4 20 20 C 1.41386 * 106.84266 * 179.89002 * 19 18 14 21 21 C 1.34519 * 106.83632 * 0.36752 * 20 19 18 22 22 O 1.34300 * 108.42052 * 359.77535 * 21 20 19 23 23 H 1.09003 * 109.47066 * 308.43968 * 1 2 3 24 24 H 1.08998 * 109.47296 * 68.45024 * 1 2 3 25 25 H 1.09006 * 109.46358 * 188.44554 * 1 2 3 26 26 H 1.08997 * 109.47451 * 240.00339 * 2 1 3 27 27 H 1.08999 * 109.47350 * 183.85321 * 3 2 1 28 28 H 1.08998 * 109.46973 * 303.86080 * 3 2 1 29 29 H 1.09007 * 109.46806 * 63.85388 * 3 2 1 30 30 H 1.08995 * 109.47156 * 316.53289 * 5 4 2 31 31 H 1.08996 * 109.47069 * 196.53211 * 5 4 2 32 32 H 0.96998 * 119.99713 * 179.97438 * 9 8 6 33 33 H 1.08991 * 109.47049 * 175.95918 * 16 14 4 34 34 H 1.09000 * 109.46986 * 295.96367 * 16 14 4 35 35 H 1.00897 * 110.99794 * 184.58988 * 17 16 14 36 36 H 1.00901 * 111.00224 * 308.54756 * 17 16 14 37 37 H 1.08006 * 126.58333 * 0.02562 * 19 18 14 38 38 H 1.07995 * 126.58492 * 180.16387 * 20 19 18 39 39 H 1.08002 * 125.78443 * 179.75453 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.7531 -2.1349 1.1203 6 6 2.7449 -2.7785 0.1858 7 1 3.4477 -2.1669 -0.3605 8 6 2.7551 -4.1482 0.0283 9 7 1.8996 -4.8931 0.6939 10 14 3.9840 -4.9460 -1.1305 11 1 5.3640 -4.6257 -0.6854 12 1 3.7894 -6.4181 -1.1213 13 1 3.7750 -4.4282 -2.5065 14 6 1.4343 -0.1149 2.4167 15 1 1.4096 0.9712 2.3279 16 6 2.2832 -0.5085 3.6272 17 7 3.6729 -0.0848 3.4093 18 6 0.0318 -0.6364 2.5958 19 6 -1.0525 0.1056 2.8839 20 6 -2.1493 -0.7835 2.9585 21 6 -1.6681 -2.0167 2.7196 22 8 -0.3465 -1.9215 2.5006 23 1 -0.3633 0.6389 0.8050 24 1 -0.3634 0.3775 -0.9558 25 1 -0.3632 -1.0166 0.1509 26 1 1.8934 -0.5138 -0.8900 27 1 3.1278 1.4435 -0.0691 28 1 1.6212 1.9760 -0.8534 29 1 1.7341 1.9361 0.9226 30 1 0.7425 -2.2975 0.7457 31 1 1.8485 -2.5769 2.1120 32 1 1.9066 -5.8566 0.5828 33 1 1.8907 -0.0217 4.5199 34 1 2.2495 -1.5900 3.7584 35 1 4.2686 -0.3988 4.1606 36 1 4.0143 -0.4096 2.5171 37 1 -1.0805 1.1756 3.0283 38 1 -3.1757 -0.5231 3.1702 39 1 -2.2465 -2.9287 2.7064 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043336152.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:04 Heat of formation + Delta-G solvation = 27.279312 kcal Electronic energy + Delta-G solvation = -20256.476332 eV Core-core repulsion = 17394.211853 eV Total energy + Delta-G solvation = -2862.264479 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.23372 -38.15886 -34.10605 -32.94430 -32.40952 -30.87410 -29.56335 -27.29907 -26.29587 -25.28809 -22.51828 -21.69929 -21.08835 -20.26171 -18.57552 -16.86126 -16.11345 -15.99178 -15.23931 -14.95193 -14.63744 -14.19251 -13.87163 -13.38692 -13.19956 -12.95958 -12.35278 -12.25729 -12.03390 -11.99641 -11.80146 -11.44383 -11.30714 -11.09687 -10.87283 -10.73636 -10.57870 -10.40758 -10.06807 -9.66384 -9.37518 -9.17015 -8.41253 -8.14353 -7.88293 -7.28602 -5.99239 -4.00703 2.28331 3.04583 3.33041 3.37426 3.40079 3.59309 4.42205 4.84386 4.95159 5.35156 5.38259 5.46199 5.52395 5.57269 5.61903 5.77642 5.82923 5.92648 6.09969 6.17980 6.21533 6.23823 6.28019 6.35836 6.45374 6.58210 6.59838 6.79778 6.89462 6.94630 7.27902 7.51609 7.66585 7.70125 7.83248 8.08794 8.14495 8.21915 8.54604 9.06972 9.62287 11.10263 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.018994 B = 0.008745 C = 0.007800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.762599 B = 3200.901580 C = 3589.080498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.080 3.920 3 C -0.140 4.140 4 N -0.515 5.515 5 C 0.189 3.811 6 C -0.506 4.506 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.155 3.845 15 H 0.104 0.896 16 C 0.076 3.924 17 N -0.845 5.845 18 C -0.007 4.007 19 C -0.231 4.231 20 C -0.222 4.222 21 C -0.052 4.052 22 O -0.139 6.139 23 H 0.059 0.941 24 H 0.044 0.956 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.011 0.989 31 H 0.035 0.965 32 H 0.260 0.740 33 H 0.063 0.937 34 H 0.034 0.966 35 H 0.330 0.670 36 H 0.362 0.638 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.134 9.105 3.774 10.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.028 4.028 3 C -0.197 4.197 4 N -0.238 5.238 5 C 0.065 3.935 6 C -0.545 4.545 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.534 5.534 10 Si 0.722 3.278 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.204 1.204 14 C 0.045 3.955 15 H 0.122 0.878 16 C -0.055 4.055 17 N -0.376 5.376 18 C -0.062 4.062 19 C -0.251 4.251 20 C -0.242 4.242 21 C -0.120 4.120 22 O -0.033 6.033 23 H 0.078 0.922 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.106 0.894 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.141 0.859 36 H 0.177 0.823 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -3.734 9.458 3.768 10.844 hybrid contribution -0.544 -1.692 -0.639 1.889 sum -4.279 7.766 3.129 9.402 Atomic orbital electron populations 1.22720 0.98465 1.02436 1.01062 1.21602 0.92004 0.94179 0.95039 1.21872 1.01587 0.95891 1.00394 1.62483 1.55338 1.06958 0.99007 1.19958 0.95818 0.79900 0.97856 1.21143 1.17353 0.91308 1.24721 0.92074 1.24959 0.95975 0.97347 0.96217 1.69971 1.36338 1.05218 1.41884 0.86628 0.81753 0.78017 0.81373 1.20277 1.21502 1.20383 1.20687 0.83015 0.98927 0.92856 0.87815 1.21678 0.89833 0.98304 0.95717 1.58771 1.02480 1.67575 1.08725 1.23692 0.98465 0.81743 1.02251 1.21422 0.92305 1.00215 1.11201 1.21640 0.99838 0.93029 1.09670 1.24056 0.82864 0.99767 1.05346 1.84585 1.23486 1.27772 1.67459 0.92210 0.93669 0.92072 0.89372 0.92114 0.93368 0.93214 0.97178 0.94741 0.93067 0.91879 0.94762 0.85912 0.82264 0.84412 0.84434 0.79134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.40 7.58 37.16 0.28 -3.12 16 2 C 0.08 1.50 2.83 -67.71 -0.19 1.31 16 3 C -0.14 -2.14 9.23 37.16 0.34 -1.80 16 4 N -0.52 -10.41 3.33 -221.52 -0.74 -11.15 16 5 C 0.19 4.70 2.94 -4.98 -0.01 4.69 16 6 C -0.51 -13.84 8.64 -34.44 -0.30 -14.14 16 7 H 0.06 1.66 7.70 -52.49 -0.40 1.25 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 10 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.16 2.78 1.96 -68.86 -0.14 2.64 16 15 H 0.10 1.72 5.81 -51.93 -0.30 1.42 16 16 C 0.08 1.32 6.25 -3.82 -0.02 1.30 16 17 N -0.84 -13.63 9.65 -10.37 -0.10 -13.73 16 18 C -0.01 -0.14 3.04 -35.63 -0.11 -0.24 16 19 C -0.23 -3.73 9.09 -39.70 -0.36 -4.09 16 20 C -0.22 -3.43 10.91 -39.70 -0.43 -3.87 16 21 C -0.05 -0.88 12.09 29.42 0.36 -0.52 16 22 O -0.14 -2.87 6.81 5.72 0.04 -2.83 16 23 H 0.06 1.01 4.98 -51.93 -0.26 0.75 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.06 1.29 5.41 -51.93 -0.28 1.01 16 26 H 0.09 1.84 7.39 -51.93 -0.38 1.46 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.72 6.12 -51.92 -0.32 0.41 16 30 H 0.01 0.29 4.67 -51.93 -0.24 0.05 16 31 H 0.03 0.95 5.87 -51.93 -0.30 0.65 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.03 0.68 6.82 -51.93 -0.35 0.33 16 35 H 0.33 4.66 9.08 -39.29 -0.36 4.30 16 36 H 0.36 6.51 8.04 -39.29 -0.32 6.20 16 37 H 0.14 1.92 8.06 -52.48 -0.42 1.50 16 38 H 0.14 1.74 8.06 -52.49 -0.42 1.31 16 39 H 0.19 2.68 8.06 -52.49 -0.42 2.26 16 LS Contribution 300.88 15.07 4.53 4.53 Total: -1.00 -29.21 300.88 -6.85 -36.06 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -5.61 Total: 12.50 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -0.68 Total: -16.36 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.10 Total: -50.41 kcal Atomic # 8 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.21 -6.85 -36.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043336152.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.335 kcal (2) G-P(sol) polarization free energy of solvation -29.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds