Wall clock time and date at job start Mon Mar 30 2020 04:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46851 * 2 1 4 4 N 1.46902 * 109.47270 * 120.00037 * 2 1 3 5 5 C 1.46894 * 110.99963 * 70.00333 * 4 2 1 6 6 C 1.50708 * 109.46986 * 76.53210 * 5 4 2 7 7 H 1.08000 * 119.99920 * 355.17460 * 6 5 4 8 8 C 1.37876 * 120.00000 * 175.17252 * 6 5 4 9 9 N 1.31519 * 119.99756 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00173 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46910 * 59.99903 * 10 8 6 12 12 H 1.48496 * 109.47307 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47092 * 300.00291 * 10 8 6 14 14 C 1.46904 * 110.99976 * 306.04897 * 4 2 1 15 15 H 1.08998 * 109.47062 * 318.89375 * 14 4 2 16 16 C 1.53001 * 109.47207 * 198.89532 * 14 4 2 17 17 N 1.46903 * 109.47103 * 55.95873 * 16 14 4 18 18 C 1.50699 * 109.46996 * 78.89719 * 14 4 2 19 19 C 1.34511 * 125.78810 * 227.09238 * 18 14 4 20 20 C 1.41386 * 106.84266 * 179.89002 * 19 18 14 21 21 C 1.34519 * 106.83632 * 0.36752 * 20 19 18 22 22 O 1.34300 * 108.42052 * 359.77535 * 21 20 19 23 23 H 1.09003 * 109.47066 * 308.43968 * 1 2 3 24 24 H 1.08998 * 109.47296 * 68.45024 * 1 2 3 25 25 H 1.09006 * 109.46358 * 188.44554 * 1 2 3 26 26 H 1.08997 * 109.47451 * 240.00339 * 2 1 3 27 27 H 1.08999 * 109.47350 * 183.85321 * 3 2 1 28 28 H 1.08998 * 109.46973 * 303.86080 * 3 2 1 29 29 H 1.09007 * 109.46806 * 63.85388 * 3 2 1 30 30 H 1.08995 * 109.47156 * 316.53289 * 5 4 2 31 31 H 1.08996 * 109.47069 * 196.53211 * 5 4 2 32 32 H 0.96998 * 119.99713 * 179.97438 * 9 8 6 33 33 H 1.08991 * 109.47049 * 175.95918 * 16 14 4 34 34 H 1.09000 * 109.46986 * 295.96367 * 16 14 4 35 35 H 1.00897 * 110.99794 * 184.58988 * 17 16 14 36 36 H 1.00901 * 111.00224 * 308.54756 * 17 16 14 37 37 H 1.08006 * 126.58333 * 0.02562 * 19 18 14 38 38 H 1.07995 * 126.58492 * 180.16387 * 20 19 18 39 39 H 1.08002 * 125.78443 * 179.75453 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.7531 -2.1349 1.1203 6 6 2.7449 -2.7785 0.1858 7 1 3.4477 -2.1669 -0.3605 8 6 2.7551 -4.1482 0.0283 9 7 1.8996 -4.8931 0.6939 10 14 3.9840 -4.9460 -1.1305 11 1 5.3640 -4.6257 -0.6854 12 1 3.7894 -6.4181 -1.1213 13 1 3.7750 -4.4282 -2.5065 14 6 1.4343 -0.1149 2.4167 15 1 1.4096 0.9712 2.3279 16 6 2.2832 -0.5085 3.6272 17 7 3.6729 -0.0848 3.4093 18 6 0.0318 -0.6364 2.5958 19 6 -1.0525 0.1056 2.8839 20 6 -2.1493 -0.7835 2.9585 21 6 -1.6681 -2.0167 2.7196 22 8 -0.3465 -1.9215 2.5006 23 1 -0.3633 0.6389 0.8050 24 1 -0.3634 0.3775 -0.9558 25 1 -0.3632 -1.0166 0.1509 26 1 1.8934 -0.5138 -0.8900 27 1 3.1278 1.4435 -0.0691 28 1 1.6212 1.9760 -0.8534 29 1 1.7341 1.9361 0.9226 30 1 0.7425 -2.2975 0.7457 31 1 1.8485 -2.5769 2.1120 32 1 1.9066 -5.8566 0.5828 33 1 1.8907 -0.0217 4.5199 34 1 2.2495 -1.5900 3.7584 35 1 4.2686 -0.3988 4.1606 36 1 4.0143 -0.4096 2.5171 37 1 -1.0805 1.1756 3.0283 38 1 -3.1757 -0.5231 3.1702 39 1 -2.2465 -2.9287 2.7064 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043336152.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:04 Heat of formation + Delta-G solvation = 6.789484 kcal Electronic energy + Delta-G solvation = -20257.364838 eV Core-core repulsion = 17394.211853 eV Total energy + Delta-G solvation = -2863.152984 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.59768 -39.69155 -35.52911 -34.91367 -33.85570 -32.33371 -31.14647 -28.87299 -27.81552 -26.87052 -24.33822 -23.14955 -22.45581 -21.65820 -20.04333 -18.58637 -17.81024 -17.53096 -16.68737 -16.60457 -16.19187 -15.91552 -15.28954 -14.82848 -14.76849 -14.37610 -14.02351 -13.58988 -13.44516 -13.39976 -13.27600 -13.09198 -12.82025 -12.66832 -12.52447 -12.43132 -12.28394 -12.05808 -11.72297 -11.35318 -11.20415 -10.62090 -10.54855 -9.53973 -9.25399 -8.91568 -8.13835 -6.23253 0.93695 1.39374 1.41557 1.49125 1.79344 2.30642 2.40836 3.16101 3.31368 3.61199 4.06227 4.12933 4.17695 4.24806 4.31278 4.37177 4.44282 4.52720 4.72851 4.79880 4.87934 4.94339 4.96939 5.01826 5.08767 5.17012 5.26932 5.31030 5.41095 5.46734 5.61778 5.73517 5.74989 6.12828 6.30893 6.37094 6.49751 6.68681 6.73411 6.94487 7.44683 8.94819 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.018994 B = 0.008745 C = 0.007800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.762599 B = 3200.901580 C = 3589.080498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.076 3.924 3 C -0.128 4.128 4 N -0.516 5.516 5 C 0.219 3.781 6 C -0.520 4.520 7 H 0.060 0.940 8 C 0.003 3.997 9 N -0.930 5.930 10 Si 0.960 3.040 11 H -0.268 1.268 12 H -0.287 1.287 13 H -0.271 1.271 14 C 0.157 3.843 15 H 0.126 0.874 16 C 0.081 3.919 17 N -0.835 5.835 18 C -0.034 4.034 19 C -0.220 4.220 20 C -0.211 4.211 21 C -0.076 4.076 22 O -0.181 6.181 23 H 0.075 0.925 24 H 0.061 0.939 25 H 0.023 0.977 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.062 0.938 30 H -0.017 1.017 31 H 0.000 1.000 32 H 0.260 0.740 33 H 0.085 0.915 34 H -0.003 1.003 35 H 0.342 0.658 36 H 0.351 0.649 37 H 0.167 0.833 38 H 0.171 0.829 39 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.304 11.268 3.640 12.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.032 4.032 3 C -0.185 4.185 4 N -0.239 5.239 5 C 0.093 3.907 6 C -0.558 4.558 7 H 0.078 0.922 8 C -0.195 4.195 9 N -0.571 5.571 10 Si 0.786 3.214 11 H -0.193 1.193 12 H -0.213 1.213 13 H -0.196 1.196 14 C 0.047 3.953 15 H 0.143 0.857 16 C -0.050 4.050 17 N -0.365 5.365 18 C -0.087 4.087 19 C -0.240 4.240 20 C -0.230 4.230 21 C -0.144 4.144 22 O -0.077 6.077 23 H 0.093 0.907 24 H 0.080 0.920 25 H 0.042 0.958 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.001 0.999 31 H 0.018 0.982 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.015 0.985 35 H 0.154 0.846 36 H 0.165 0.835 37 H 0.185 0.815 38 H 0.188 0.812 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.899 11.654 3.647 12.819 hybrid contribution -0.552 -2.333 -0.551 2.460 sum -4.451 9.321 3.095 10.783 Atomic orbital electron populations 1.22587 0.97852 1.00492 1.02493 1.21666 0.92535 0.95902 0.93141 1.21771 1.01471 0.93207 1.02091 1.62362 1.56148 1.04562 1.00795 1.19380 0.93647 0.82719 0.94972 1.21523 1.17602 0.91796 1.24918 0.92224 1.25812 0.97799 0.98053 0.97816 1.70117 1.38114 1.05340 1.43494 0.85577 0.79560 0.76895 0.79397 1.19345 1.21283 1.19594 1.20753 0.83202 0.99683 0.91633 0.85656 1.21649 0.90601 0.96220 0.96567 1.58795 1.02152 1.66968 1.08604 1.23772 0.99131 0.81570 1.04211 1.21789 0.91457 1.01473 1.09232 1.22018 1.01175 0.91929 1.07843 1.24625 0.82055 1.01642 1.06092 1.84524 1.25275 1.29306 1.68558 0.90668 0.92017 0.95782 0.92330 0.92293 0.91068 0.91909 0.99921 0.98155 0.93162 0.89691 0.98465 0.84622 0.83474 0.81507 0.81158 0.77567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.21 7.58 71.98 0.55 -5.67 16 2 C 0.08 2.81 2.83 44.92 0.13 2.94 16 3 C -0.13 -3.58 9.23 71.98 0.66 -2.92 16 4 N -0.52 -21.12 3.33 -854.77 -2.84 -23.97 16 5 C 0.22 11.39 2.94 85.56 0.25 11.64 16 6 C -0.52 -29.33 8.64 25.60 0.22 -29.11 16 7 H 0.06 3.30 7.70 -2.91 -0.02 3.28 16 8 C 0.00 0.18 5.46 84.65 0.46 0.64 16 9 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 10 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 13 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 14 C 0.16 5.50 1.96 44.17 0.09 5.59 16 15 H 0.13 3.83 5.81 -2.39 -0.01 3.81 16 16 C 0.08 2.81 6.25 86.30 0.54 3.35 16 17 N -0.83 -26.33 9.65 -186.72 -1.80 -28.13 16 18 C -0.03 -1.23 3.04 24.83 0.08 -1.15 16 19 C -0.22 -6.56 9.09 22.19 0.20 -6.36 16 20 C -0.21 -6.07 10.91 22.19 0.24 -5.83 16 21 C -0.08 -2.62 12.09 66.97 0.81 -1.81 16 22 O -0.18 -7.74 6.81 -2.45 -0.02 -7.76 16 23 H 0.07 2.38 4.98 -2.39 -0.01 2.37 16 24 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.02 1.02 5.41 -2.38 -0.01 1.00 16 26 H 0.06 2.49 7.39 -2.39 -0.02 2.47 16 27 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.06 1.60 6.12 -2.38 -0.01 1.58 16 30 H -0.02 -0.96 4.67 -2.39 -0.01 -0.97 16 31 H 0.00 0.02 5.87 -2.39 -0.01 0.01 16 32 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 33 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.00 -0.12 6.82 -2.39 -0.02 -0.14 16 35 H 0.34 9.39 9.08 -89.70 -0.81 8.57 16 36 H 0.35 12.59 8.04 -89.69 -0.72 11.87 16 37 H 0.17 3.93 8.06 -2.91 -0.02 3.91 16 38 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16 39 H 0.21 5.93 8.06 -2.91 -0.02 5.91 16 Total: -1.00 -65.49 300.88 1.41 -64.08 By element: Atomic # 1 Polarization: 34.37 SS G_CDS: -0.47 Total: 33.91 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 4.23 Total: -28.71 kcal Atomic # 7 Polarization: -104.06 SS G_CDS: -4.36 Total: -108.42 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.02 Total: -7.76 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -65.49 1.41 -64.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043336152.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.873 kcal (2) G-P(sol) polarization free energy of solvation -65.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds