Wall clock time and date at job start Mon Mar 30 2020 03:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47179 * 2 1 4 4 C 1.50708 * 109.46973 * 119.99672 * 2 1 3 5 5 N 1.33061 * 126.00889 * 300.02651 * 4 2 1 6 6 C 1.32814 * 108.64930 * 179.97438 * 5 4 2 7 7 C 1.39806 * 125.79764 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99962 * 0.02562 * 7 6 5 9 9 C 1.40336 * 119.99847 * 180.02562 * 7 6 5 10 10 N 1.30631 * 119.99851 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00158 * 180.02562 * 9 7 6 12 12 H 1.48510 * 109.46820 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47368 * 119.99773 * 11 9 7 14 14 H 1.48505 * 109.47009 * 240.00246 * 11 9 7 15 15 O 1.34940 * 108.40126 * 359.97438 * 6 5 4 16 16 C 1.34597 * 107.61047 * 0.02562 * 15 6 5 17 17 C 1.50704 * 126.32353 * 179.97438 * 16 15 6 18 18 C 1.53004 * 109.46955 * 269.97808 * 17 16 15 19 19 N 1.46903 * 109.47157 * 180.02562 * 18 17 16 20 20 C 1.46893 * 111.00350 * 169.99744 * 19 18 17 21 21 C 1.46907 * 110.99363 * 293.95141 * 19 18 17 22 22 H 1.09004 * 109.47506 * 300.00055 * 1 2 3 23 23 H 1.09004 * 109.46913 * 60.00407 * 1 2 3 24 24 H 1.09007 * 109.47018 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47488 * 239.99966 * 2 1 3 26 26 H 1.08998 * 109.47353 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47113 * 300.00087 * 3 2 1 28 28 H 1.09003 * 109.47664 * 59.99395 * 3 2 1 29 29 H 0.97000 * 119.99995 * 180.02562 * 10 9 7 30 30 H 1.08998 * 109.47092 * 29.96884 * 17 16 15 31 31 H 1.08992 * 109.47307 * 149.97605 * 17 16 15 32 32 H 1.09003 * 109.46901 * 299.99624 * 18 17 16 33 33 H 1.08997 * 109.47715 * 59.99613 * 18 17 16 34 34 H 1.09010 * 109.46990 * 59.99424 * 20 19 18 35 35 H 1.09000 * 109.47427 * 179.97438 * 20 19 18 36 36 H 1.09003 * 109.46974 * 300.00137 * 20 19 18 37 37 H 1.08995 * 109.47567 * 60.00309 * 21 19 18 38 38 H 1.09003 * 109.46403 * 179.97438 * 21 19 18 39 39 H 1.08997 * 109.47198 * 299.99606 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 7 1.7852 -0.3618 2.4907 6 6 2.3942 -1.2237 3.2970 7 6 2.3719 -1.1922 4.6945 8 1 1.8234 -0.4168 5.2085 9 6 3.0623 -2.1683 5.4295 10 7 3.7261 -3.1060 4.8077 11 14 3.0319 -2.1268 7.2967 12 1 2.2159 -0.9728 7.7529 13 1 2.4383 -3.3873 7.8104 14 1 4.4179 -1.9865 7.8113 15 8 3.0382 -2.1350 2.5382 16 6 2.8167 -1.8204 1.2484 17 6 3.3415 -2.5618 0.0459 18 6 4.6969 -1.9797 -0.3606 19 7 5.2082 -2.7019 -1.5332 20 6 6.3844 -2.0257 -2.0963 21 6 5.5143 -4.0992 -1.1984 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 4.2030 -3.7809 5.3157 30 1 3.4587 -3.6171 0.2923 31 1 2.6387 -2.4575 -0.7806 32 1 4.5798 -0.9243 -0.6070 33 1 5.3998 -2.0839 0.4658 34 1 7.1717 -1.9790 -1.3438 35 1 6.7429 -2.5815 -2.9627 36 1 6.1117 -1.0150 -2.4000 37 1 4.6090 -4.5959 -0.8494 38 1 5.8905 -4.6109 -2.0843 39 1 6.2700 -4.1276 -0.4135 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074044554.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:43 Heat of formation + Delta-G solvation = -31.530583 kcal Electronic energy + Delta-G solvation = -19080.250292 eV Core-core repulsion = 16215.435625 eV Total energy + Delta-G solvation = -2864.814667 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.02328 -38.61469 -36.92686 -35.64544 -33.91865 -32.98999 -30.20011 -28.50864 -27.93917 -27.43199 -25.10725 -23.32540 -22.45644 -21.56008 -20.61641 -19.23553 -17.26201 -16.87343 -16.56417 -16.42136 -15.98799 -15.61624 -15.48634 -14.88285 -14.62938 -14.41162 -13.99218 -13.66146 -13.34620 -13.30086 -13.04509 -12.98513 -12.84895 -12.80420 -12.56862 -12.43568 -12.12130 -12.07503 -11.90995 -11.82690 -11.61102 -11.45082 -11.06420 -10.46431 -9.41947 -9.19416 -8.83676 -6.67985 1.09584 1.36456 1.53978 1.55967 2.15397 2.23756 2.75440 3.15899 3.23405 3.89262 4.00786 4.06293 4.17057 4.26605 4.40624 4.44575 4.49502 4.59575 4.62076 4.69371 4.72476 4.84185 4.86064 4.96936 4.98007 4.99842 5.02748 5.05011 5.05744 5.12234 5.24918 5.44619 5.55515 5.88911 5.96333 6.03214 6.08758 6.21241 6.55368 6.68870 7.88330 8.21507 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.016821 B = 0.007105 C = 0.005366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.150209 B = 3939.903455 C = 5216.515156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.012 4.012 3 C -0.126 4.126 4 C 0.024 3.976 5 N -0.627 5.627 6 C 0.311 3.689 7 C -0.464 4.464 8 H 0.108 0.892 9 C 0.028 3.972 10 N -0.813 5.813 11 Si 1.012 2.988 12 H -0.252 1.252 13 H -0.259 1.259 14 H -0.260 1.260 15 O -0.210 6.210 16 C -0.212 4.212 17 C 0.010 3.990 18 C 0.074 3.926 19 N -0.549 5.549 20 C 0.023 3.977 21 C 0.019 3.981 22 H 0.037 0.963 23 H 0.086 0.914 24 H 0.040 0.960 25 H 0.092 0.908 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.037 0.963 29 H 0.295 0.705 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.005 0.995 34 H 0.018 0.982 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.867 0.036 -9.630 10.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.030 4.030 3 C -0.183 4.183 4 C -0.100 4.100 5 N -0.362 5.362 6 C 0.126 3.874 7 C -0.499 4.499 8 H 0.126 0.874 9 C -0.191 4.191 10 N -0.441 5.441 11 Si 0.830 3.170 12 H -0.175 1.175 13 H -0.183 1.183 14 H -0.184 1.184 15 O -0.103 6.103 16 C -0.267 4.267 17 C -0.028 4.028 18 C -0.054 4.054 19 N -0.273 5.273 20 C -0.125 4.125 21 C -0.129 4.129 22 H 0.056 0.944 23 H 0.105 0.895 24 H 0.060 0.940 25 H 0.110 0.890 26 H 0.059 0.941 27 H 0.105 0.895 28 H 0.056 0.944 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.093 0.907 33 H 0.024 0.976 34 H 0.036 0.964 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 2.293 0.346 -9.779 10.050 hybrid contribution 1.174 -0.778 1.512 2.066 sum 3.467 -0.433 -8.267 8.975 Atomic orbital electron populations 1.21655 0.93863 1.01092 1.01906 1.19569 0.96272 0.95687 0.91516 1.21637 1.00019 0.94797 1.01889 1.21764 0.98869 0.95175 0.94225 1.70746 1.32960 1.31460 1.01000 1.22566 0.87965 0.82770 0.94132 1.18783 1.31468 1.13756 0.85927 0.87379 1.27179 0.91512 0.92388 1.08009 1.69789 1.22168 1.10936 1.41204 0.84713 0.79625 0.79986 0.72675 1.17465 1.18291 1.18388 1.84733 1.61084 1.48611 1.15892 1.23332 1.13738 1.04815 0.84783 1.19511 0.96163 0.96981 0.90177 1.21973 0.94799 0.98306 0.90335 1.62061 1.32772 1.03088 1.29354 1.22467 0.90307 1.00291 0.99411 1.22496 1.00413 0.89197 1.00766 0.94351 0.89497 0.94034 0.89015 0.94077 0.89517 0.94375 0.89416 0.92482 0.88296 0.90730 0.97621 0.96364 0.89199 0.90708 0.91671 0.88975 0.96639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 9.17 71.98 0.66 -3.58 16 2 C -0.01 -0.42 3.28 -11.54 -0.04 -0.46 16 3 C -0.13 -4.16 9.18 71.98 0.66 -3.50 16 4 C 0.02 1.20 5.61 41.84 0.23 1.43 16 5 N -0.63 -35.77 11.34 -297.40 -3.37 -39.14 16 6 C 0.31 18.84 7.66 84.92 0.65 19.49 16 7 C -0.46 -26.74 9.45 23.16 0.22 -26.52 16 8 H 0.11 5.98 7.85 -2.91 -0.02 5.96 16 9 C 0.03 1.43 5.50 85.38 0.47 1.90 16 10 N -0.81 -44.41 11.98 21.89 0.26 -44.15 16 11 Si 1.01 38.32 29.56 68.60 2.03 40.35 16 12 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 13 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 14 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 15 O -0.21 -12.61 9.06 -11.73 -0.11 -12.71 16 16 C -0.21 -10.66 6.67 25.15 0.17 -10.50 16 17 C 0.01 0.37 5.33 29.85 0.16 0.53 16 18 C 0.07 2.59 4.94 86.30 0.43 3.02 16 19 N -0.55 -15.38 5.02 -948.82 -4.76 -20.14 16 20 C 0.02 0.51 9.57 127.69 1.22 1.74 16 21 C 0.02 0.50 9.32 127.69 1.19 1.69 16 22 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 24 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.09 2.94 6.83 -2.39 -0.02 2.93 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.30 14.25 8.29 -92.71 -0.77 13.48 16 30 H 0.06 2.25 6.55 -2.39 -0.02 2.24 16 31 H 0.10 3.39 7.17 -2.39 -0.02 3.37 16 32 H 0.07 2.56 8.06 -2.39 -0.02 2.54 16 33 H 0.01 0.22 8.12 -2.39 -0.02 0.20 16 34 H 0.02 0.42 8.14 -2.38 -0.02 0.40 16 35 H 0.09 1.57 8.12 -2.39 -0.02 1.55 16 36 H 0.07 1.56 8.12 -2.39 -0.02 1.54 16 37 H 0.06 1.77 6.47 -2.39 -0.02 1.75 16 38 H 0.09 1.83 8.12 -2.39 -0.02 1.81 16 39 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -69.22 322.83 1.08 -68.14 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 1.01 Total: 22.42 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: 6.02 Total: -14.76 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -7.87 Total: -103.43 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.11 Total: -12.71 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Total: -69.22 1.08 -68.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074044554.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.605 kcal (2) G-P(sol) polarization free energy of solvation -69.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds