Wall clock time and date at job start Mon Mar 30 2020 05:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.53910 * 2 1 4 4 C 1.53096 * 109.50390 * 239.89421 * 2 1 3 5 5 N 1.47017 * 109.25430 * 183.21702 * 4 2 1 6 6 C 1.46908 * 110.99639 * 182.39391 * 5 4 2 7 7 C 1.52997 * 109.46699 * 170.00216 * 6 5 4 8 8 H 1.08998 * 109.47711 * 54.99907 * 7 6 5 9 9 C 1.47204 * 109.47142 * 294.99226 * 7 6 5 10 10 N 5.49456 * 147.16803 * 295.36382 * 2 1 3 11 11 C 1.53004 * 109.47070 * 175.00094 * 7 6 5 12 12 C 1.50701 * 109.47211 * 185.00010 * 11 7 6 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 7 14 14 C 1.37871 * 119.99694 * 180.27574 * 12 11 7 15 15 N 1.31523 * 119.99908 * 179.72112 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 359.71709 * 14 12 11 17 17 H 1.48500 * 109.47210 * 90.00069 * 16 14 12 18 18 H 1.48504 * 109.47424 * 210.00300 * 16 14 12 19 19 H 1.48502 * 109.46888 * 330.00390 * 16 14 12 20 20 C 1.47012 * 110.75310 * 58.61674 * 5 4 2 21 21 C 1.53098 * 109.25737 * 301.38125 * 20 5 4 22 22 H 1.09000 * 109.50512 * 176.78760 * 21 20 5 23 23 C 1.52996 * 109.50638 * 296.91646 * 21 20 5 24 24 O 1.43012 * 109.25606 * 56.85119 * 21 20 5 25 25 H 1.08999 * 109.47516 * 180.10882 * 1 2 3 26 26 H 1.09005 * 109.47342 * 300.10589 * 1 2 3 27 27 H 1.09003 * 109.47230 * 60.10321 * 1 2 3 28 28 H 1.09001 * 109.50910 * 63.28025 * 4 2 1 29 29 H 1.09001 * 109.50753 * 303.14684 * 4 2 1 30 30 H 1.08999 * 109.47398 * 49.99755 * 6 5 4 31 31 H 1.09000 * 109.46928 * 289.99856 * 6 5 4 32 32 H 1.09000 * 109.47211 * 64.99037 * 11 7 6 33 33 H 1.09007 * 109.46376 * 304.99579 * 11 7 6 34 34 H 0.96995 * 120.00181 * 179.97438 * 15 14 12 35 35 H 1.08996 * 109.50576 * 61.31831 * 20 5 4 36 36 H 1.09001 * 109.50164 * 181.45126 * 20 5 4 37 37 H 1.08999 * 109.47292 * 179.77909 * 23 21 20 38 38 H 1.08995 * 109.47343 * 299.78293 * 23 21 20 39 39 H 1.09000 * 109.47590 * 59.78414 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0273 0.0000 4 6 2.0412 -0.7239 -1.2484 5 7 3.5092 -0.7884 -1.2045 6 6 4.0446 -1.4268 -2.4145 7 6 5.5644 -1.2547 -2.4520 8 1 5.9968 -1.6412 -1.5291 9 6 5.8932 0.1738 -2.5874 10 7 6.1469 1.2761 -2.6919 11 6 6.1356 -2.0247 -3.6444 12 6 7.6407 -1.9572 -3.6115 13 1 8.1399 -1.4187 -2.8196 14 6 8.3801 -2.5778 -4.5959 15 7 9.6936 -2.5144 -4.5703 16 14 7.5166 -3.5089 -5.9659 17 1 7.2462 -2.5861 -7.0975 18 1 8.3831 -4.6217 -6.4308 19 1 6.2340 -4.0590 -5.4584 20 6 3.9639 -1.4884 0.0057 21 6 3.4334 -0.7569 1.2416 22 1 3.7201 -1.3042 2.1395 23 6 4.0229 0.6541 1.2922 24 8 2.0076 -0.6763 1.1661 25 1 -0.3634 -1.0276 0.0020 26 1 -0.3634 0.5155 0.8891 27 1 -0.3634 0.5122 -0.8909 28 1 1.7272 -0.1794 -2.1390 29 1 1.6331 -1.7342 -1.2760 30 1 3.6042 -0.9611 -3.2961 31 1 3.7993 -2.4888 -2.4038 32 1 5.7720 -1.5810 -4.5713 33 1 5.8172 -3.0658 -3.5906 34 1 10.2138 -2.9513 -5.2625 35 1 3.5866 -2.5110 -0.0019 36 1 5.0535 -1.5020 0.0306 37 1 3.6418 1.1758 2.1702 38 1 5.1095 0.5920 1.3497 39 1 3.7372 1.1998 0.3930 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078316172.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:21 Heat of formation + Delta-G solvation = -25.886313 kcal Electronic energy + Delta-G solvation = -19069.893581 eV Core-core repulsion = 16205.323668 eV Total energy + Delta-G solvation = -2864.569913 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -40.09155 -37.21869 -35.20376 -33.58066 -33.43819 -31.86337 -30.18695 -27.64880 -26.93985 -24.78319 -23.01666 -21.84857 -21.45049 -19.50716 -17.02460 -16.95016 -16.32761 -16.23458 -15.31107 -15.08941 -14.70801 -14.35530 -13.76307 -13.47147 -13.23633 -13.02064 -12.60445 -12.51809 -12.31677 -12.18048 -12.04042 -11.81581 -11.75024 -11.41623 -11.37666 -11.26955 -11.12345 -10.74635 -10.38581 -10.25074 -10.01425 -9.88529 -9.52411 -9.32832 -8.63887 -8.32498 -6.12835 -4.13726 3.24945 3.32308 3.33024 3.61097 3.65868 3.74507 3.84318 4.36076 4.66747 4.77823 4.80923 4.92551 5.01814 5.10490 5.21959 5.25706 5.32295 5.38228 5.45434 5.48503 5.54349 5.69749 5.72955 5.81897 5.86987 5.89824 5.96303 6.01691 6.17023 6.26440 6.33900 6.90865 6.96074 6.97987 7.08517 7.17484 7.61014 8.38155 8.52129 8.90458 9.46922 11.00254 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.032524 B = 0.005142 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.700641 B = 5443.566361 C = 5727.783284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.086 3.914 3 H 0.069 0.931 4 C 0.025 3.975 5 N -0.537 5.537 6 C 0.060 3.940 7 C 0.021 3.979 8 H 0.105 0.895 9 C 0.253 3.747 10 N -0.470 5.470 11 C -0.005 4.005 12 C -0.528 4.528 13 H 0.074 0.926 14 C 0.072 3.928 15 N -0.897 5.897 16 Si 0.877 3.123 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.263 1.263 20 C 0.018 3.982 21 C 0.092 3.908 22 H 0.104 0.896 23 C -0.176 4.176 24 O -0.380 6.380 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.021 0.979 33 H 0.036 0.964 34 H 0.265 0.735 35 H 0.045 0.955 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.577 0.450 9.299 19.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.087 0.913 4 C -0.103 4.103 5 N -0.261 5.261 6 C -0.069 4.069 7 C -0.001 4.001 8 H 0.123 0.877 9 C -0.064 4.064 10 N -0.147 5.147 11 C -0.044 4.044 12 C -0.566 4.566 13 H 0.092 0.908 14 C -0.130 4.130 15 N -0.535 5.535 16 Si 0.705 3.295 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.188 1.188 20 C -0.110 4.110 21 C 0.034 3.966 22 H 0.122 0.878 23 C -0.233 4.233 24 O -0.299 6.299 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.112 0.888 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.968 2.464 9.205 19.461 hybrid contribution -0.326 -1.693 -1.071 2.029 sum -17.294 0.772 8.134 19.127 Atomic orbital electron populations 1.21740 0.93112 1.02785 1.02465 1.22136 0.94393 0.96157 0.84541 0.91346 1.22788 0.88142 1.00128 0.99235 1.62212 1.08363 1.53172 1.02377 1.22285 0.94348 0.97942 0.92303 1.18983 0.93597 0.84019 1.03539 0.87739 1.28681 0.91589 0.94321 0.91851 1.80998 1.10058 1.13536 1.10093 1.19647 0.97703 0.95277 0.91780 1.21012 0.88629 1.34666 1.12272 0.90787 1.24985 0.94691 0.95780 0.97588 1.69906 1.05048 1.43945 1.34553 0.86820 0.80015 0.79983 0.82732 1.20225 1.21230 1.18792 1.22890 1.02001 0.95880 0.90262 1.22248 0.80451 0.96495 0.97413 0.87829 1.22277 1.01555 0.96958 1.02518 1.88003 1.21038 1.78125 1.42763 0.91966 0.91759 0.91064 0.89852 0.93918 0.90079 0.92726 0.96091 0.94555 0.92540 0.93645 0.88834 0.92686 0.91546 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.57 37.16 0.36 -0.85 16 2 C 0.09 0.92 3.03 -26.68 -0.08 0.84 16 3 H 0.07 0.78 6.49 -51.93 -0.34 0.45 16 4 C 0.03 0.28 4.93 -3.71 -0.02 0.26 16 5 N -0.54 -6.93 3.79 -234.30 -0.89 -7.82 16 6 C 0.06 0.83 4.32 -3.82 -0.02 0.81 16 7 C 0.02 0.36 2.14 -93.40 -0.20 0.16 16 8 H 0.10 1.75 6.30 -51.93 -0.33 1.42 16 9 C 0.25 5.16 13.67 -20.76 -0.28 4.88 16 10 N -0.47 -10.54 18.54 42.15 0.78 -9.76 16 11 C -0.01 -0.11 3.49 -27.88 -0.10 -0.21 16 12 C -0.53 -14.12 9.15 -34.44 -0.32 -14.43 16 13 H 0.07 2.18 7.84 -52.49 -0.41 1.76 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 15 N -0.90 -26.93 13.96 55.43 0.77 -26.15 16 16 Si 0.88 20.53 27.46 -169.99 -4.67 15.86 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.26 -5.69 6.55 56.52 0.37 -5.32 16 20 C 0.02 0.21 4.86 -3.71 -0.02 0.19 16 21 C 0.09 1.04 3.92 -26.68 -0.10 0.93 16 22 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 23 C -0.18 -2.04 8.88 37.16 0.33 -1.71 16 24 O -0.38 -4.63 10.28 -35.23 -0.36 -4.99 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 1.10 8.04 -51.93 -0.42 0.68 16 31 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 32 H 0.02 0.45 7.56 -51.93 -0.39 0.05 16 33 H 0.04 0.73 7.21 -51.93 -0.37 0.35 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.09 1.15 6.29 -51.93 -0.33 0.82 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.95 6.13 -51.93 -0.32 0.63 16 LS Contribution 313.73 15.07 4.73 4.73 Total: -1.00 -31.05 313.73 -6.48 -37.53 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -6.29 Total: -2.18 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -0.55 Total: -7.21 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.67 Total: -43.73 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.36 Total: -4.99 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.67 Total: 15.86 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.05 -6.48 -37.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078316172.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.645 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds