Wall clock time and date at job start Mon Mar 30 2020 05:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.53910 * 2 1 4 4 C 1.53096 * 109.50390 * 239.89421 * 2 1 3 5 5 N 1.47017 * 109.25430 * 183.21702 * 4 2 1 6 6 C 1.46908 * 110.99639 * 182.39391 * 5 4 2 7 7 C 1.52997 * 109.46699 * 170.00216 * 6 5 4 8 8 H 1.08998 * 109.47711 * 54.99907 * 7 6 5 9 9 C 1.47204 * 109.47142 * 294.99226 * 7 6 5 10 10 N 5.49456 * 147.16803 * 295.36382 * 2 1 3 11 11 C 1.53004 * 109.47070 * 175.00094 * 7 6 5 12 12 C 1.50701 * 109.47211 * 185.00010 * 11 7 6 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 7 14 14 C 1.37871 * 119.99694 * 180.27574 * 12 11 7 15 15 N 1.31523 * 119.99908 * 179.72112 * 14 12 11 16 16 Si 1.86800 * 120.00405 * 359.71709 * 14 12 11 17 17 H 1.48500 * 109.47210 * 90.00069 * 16 14 12 18 18 H 1.48504 * 109.47424 * 210.00300 * 16 14 12 19 19 H 1.48502 * 109.46888 * 330.00390 * 16 14 12 20 20 C 1.47012 * 110.75310 * 58.61674 * 5 4 2 21 21 C 1.53098 * 109.25737 * 301.38125 * 20 5 4 22 22 H 1.09000 * 109.50512 * 176.78760 * 21 20 5 23 23 C 1.52996 * 109.50638 * 296.91646 * 21 20 5 24 24 O 1.43012 * 109.25606 * 56.85119 * 21 20 5 25 25 H 1.08999 * 109.47516 * 180.10882 * 1 2 3 26 26 H 1.09005 * 109.47342 * 300.10589 * 1 2 3 27 27 H 1.09003 * 109.47230 * 60.10321 * 1 2 3 28 28 H 1.09001 * 109.50910 * 63.28025 * 4 2 1 29 29 H 1.09001 * 109.50753 * 303.14684 * 4 2 1 30 30 H 1.08999 * 109.47398 * 49.99755 * 6 5 4 31 31 H 1.09000 * 109.46928 * 289.99856 * 6 5 4 32 32 H 1.09000 * 109.47211 * 64.99037 * 11 7 6 33 33 H 1.09007 * 109.46376 * 304.99579 * 11 7 6 34 34 H 0.96995 * 120.00181 * 179.97438 * 15 14 12 35 35 H 1.08996 * 109.50576 * 61.31831 * 20 5 4 36 36 H 1.09001 * 109.50164 * 181.45126 * 20 5 4 37 37 H 1.08999 * 109.47292 * 179.77909 * 23 21 20 38 38 H 1.08995 * 109.47343 * 299.78293 * 23 21 20 39 39 H 1.09000 * 109.47590 * 59.78414 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0273 0.0000 4 6 2.0412 -0.7239 -1.2484 5 7 3.5092 -0.7884 -1.2045 6 6 4.0446 -1.4268 -2.4145 7 6 5.5644 -1.2547 -2.4520 8 1 5.9968 -1.6412 -1.5291 9 6 5.8932 0.1738 -2.5874 10 7 6.1469 1.2761 -2.6919 11 6 6.1356 -2.0247 -3.6444 12 6 7.6407 -1.9572 -3.6115 13 1 8.1399 -1.4187 -2.8196 14 6 8.3801 -2.5778 -4.5959 15 7 9.6936 -2.5144 -4.5703 16 14 7.5166 -3.5089 -5.9659 17 1 7.2462 -2.5861 -7.0975 18 1 8.3831 -4.6217 -6.4308 19 1 6.2340 -4.0590 -5.4584 20 6 3.9639 -1.4884 0.0057 21 6 3.4334 -0.7569 1.2416 22 1 3.7201 -1.3042 2.1395 23 6 4.0229 0.6541 1.2922 24 8 2.0076 -0.6763 1.1661 25 1 -0.3634 -1.0276 0.0020 26 1 -0.3634 0.5155 0.8891 27 1 -0.3634 0.5122 -0.8909 28 1 1.7272 -0.1794 -2.1390 29 1 1.6331 -1.7342 -1.2760 30 1 3.6042 -0.9611 -3.2961 31 1 3.7993 -2.4888 -2.4038 32 1 5.7720 -1.5810 -4.5713 33 1 5.8172 -3.0658 -3.5906 34 1 10.2138 -2.9513 -5.2625 35 1 3.5866 -2.5110 -0.0019 36 1 5.0535 -1.5020 0.0306 37 1 3.6418 1.1758 2.1702 38 1 5.1095 0.5920 1.3497 39 1 3.7372 1.1998 0.3930 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078316172.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:19 Heat of formation + Delta-G solvation = -46.413701 kcal Electronic energy + Delta-G solvation = -19070.783715 eV Core-core repulsion = 16205.323668 eV Total energy + Delta-G solvation = -2865.460048 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -41.01296 -38.57185 -36.54240 -35.33939 -34.28994 -33.60158 -31.17363 -29.16205 -27.81895 -26.06576 -23.92927 -23.32748 -22.82539 -20.38997 -18.92077 -18.35135 -17.36488 -17.24618 -16.42560 -16.18750 -16.05140 -15.50921 -15.08415 -14.82954 -14.72026 -14.36469 -13.88448 -13.79323 -13.47197 -13.28693 -13.15398 -13.08797 -12.87564 -12.70351 -12.62870 -12.57572 -12.24826 -12.00854 -11.79352 -11.69943 -11.60399 -11.31133 -11.14285 -10.73874 -10.46341 -9.26529 -8.24793 -6.30606 1.43416 1.44133 1.55169 2.04533 2.12198 2.40786 2.74098 2.90009 3.11738 3.30473 3.83367 3.91038 3.97917 4.13476 4.22970 4.29288 4.33368 4.45528 4.52995 4.56373 4.66046 4.74357 4.78706 4.83763 4.87264 4.88497 5.01284 5.07022 5.18243 5.23212 5.28807 5.39756 5.42333 5.62827 5.99671 6.05273 6.26196 6.31391 6.76789 6.90256 7.33978 8.92144 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.032524 B = 0.005142 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.700641 B = 5443.566361 C = 5727.783284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.082 3.918 3 H 0.057 0.943 4 C 0.028 3.972 5 N -0.552 5.552 6 C 0.070 3.930 7 C 0.026 3.974 8 H 0.112 0.888 9 C 0.263 3.737 10 N -0.513 5.513 11 C -0.003 4.003 12 C -0.531 4.531 13 H 0.028 0.972 14 C 0.004 3.996 15 N -0.954 5.954 16 Si 0.947 3.053 17 H -0.276 1.276 18 H -0.290 1.290 19 H -0.223 1.223 20 C 0.017 3.983 21 C 0.092 3.908 22 H 0.120 0.880 23 C -0.170 4.170 24 O -0.390 6.390 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.026 0.974 33 H 0.063 0.937 34 H 0.265 0.735 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.498 -0.993 8.973 22.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.024 3.976 3 H 0.075 0.925 4 C -0.100 4.100 5 N -0.276 5.276 6 C -0.059 4.059 7 C 0.004 3.996 8 H 0.129 0.871 9 C -0.053 4.053 10 N -0.191 5.191 11 C -0.042 4.042 12 C -0.569 4.569 13 H 0.047 0.953 14 C -0.193 4.193 15 N -0.595 5.595 16 Si 0.770 3.230 17 H -0.202 1.202 18 H -0.216 1.216 19 H -0.146 1.146 20 C -0.111 4.111 21 C 0.034 3.966 22 H 0.138 0.862 23 C -0.228 4.228 24 O -0.309 6.309 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.927 1.027 8.903 21.849 hybrid contribution 0.643 -1.164 -0.873 1.591 sum -19.283 -0.137 8.029 20.889 Atomic orbital electron populations 1.21731 0.91261 1.03239 1.03341 1.22255 0.95811 0.95388 0.84115 0.92505 1.22823 0.86758 1.00732 0.99686 1.62143 1.09723 1.53533 1.02246 1.22155 0.91043 0.99551 0.93145 1.19066 0.96610 0.81542 1.02376 0.87063 1.29349 0.90329 0.94939 0.90681 1.80995 1.11589 1.15084 1.11392 1.19592 0.93752 0.97361 0.93460 1.21381 0.91853 1.33054 1.10570 0.95335 1.26026 0.95260 0.97192 1.00781 1.70089 1.07281 1.46040 1.36063 0.85710 0.80241 0.78247 0.78786 1.20197 1.21577 1.14582 1.22902 1.01597 0.96358 0.90201 1.22313 0.80267 0.96115 0.97896 0.86232 1.22212 1.01206 0.97403 1.01931 1.88000 1.21228 1.78231 1.43463 0.91654 0.91659 0.89488 0.89006 0.93079 0.89356 0.90396 0.95516 0.91857 0.92657 0.92731 0.89581 0.91940 0.92102 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.57 71.98 0.69 -1.30 16 2 C 0.08 1.60 3.03 30.63 0.09 1.70 16 3 H 0.06 1.24 6.49 -2.39 -0.02 1.22 16 4 C 0.03 0.54 4.93 86.31 0.43 0.96 16 5 N -0.55 -12.96 3.79 -895.20 -3.39 -16.35 16 6 C 0.07 1.70 4.32 86.30 0.37 2.08 16 7 C 0.03 0.86 2.14 -12.60 -0.03 0.84 16 8 H 0.11 3.59 6.30 -2.39 -0.02 3.57 16 9 C 0.26 10.67 13.67 89.44 1.22 11.89 16 10 N -0.51 -23.26 18.54 20.01 0.37 -22.89 16 11 C 0.00 -0.11 3.49 29.85 0.10 0.00 16 12 C -0.53 -28.48 9.15 25.60 0.23 -28.24 16 13 H 0.03 1.74 7.84 -2.91 -0.02 1.71 16 14 C 0.00 0.23 5.47 84.65 0.46 0.69 16 15 N -0.95 -58.92 13.96 21.45 0.30 -58.62 16 16 Si 0.95 41.14 27.46 68.60 1.88 43.02 16 17 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.22 -8.22 6.55 99.48 0.65 -7.57 16 20 C 0.02 0.38 4.86 86.31 0.42 0.80 16 21 C 0.09 1.92 3.92 30.63 0.12 2.04 16 22 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 23 C -0.17 -3.85 8.88 71.98 0.64 -3.21 16 24 O -0.39 -8.70 10.28 -148.98 -1.53 -10.24 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.09 1.62 8.09 -2.39 -0.02 1.60 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 30 H 0.09 2.06 8.04 -2.39 -0.02 2.04 16 31 H 0.08 1.59 8.12 -2.39 -0.02 1.57 16 32 H 0.03 1.05 7.56 -2.39 -0.02 1.03 16 33 H 0.06 2.25 7.21 -2.38 -0.02 2.23 16 34 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.09 1.99 6.29 -2.39 -0.02 1.98 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 38 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.05 1.41 6.13 -2.39 -0.01 1.40 16 Total: -1.00 -68.53 313.73 3.35 -65.19 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.96 Total: 11.64 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 4.76 Total: -11.75 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -2.72 Total: -97.86 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -1.53 Total: -10.24 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 1.88 Total: 43.02 kcal Total: -68.53 3.35 -65.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078316172.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.772 kcal (2) G-P(sol) polarization free energy of solvation -68.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds