Wall clock time and date at job start Mon Mar 30 2020 05:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 108.53755 * 2 1 4 4 C 1.51690 * 108.59269 * 242.25982 * 2 1 3 5 5 C 1.53154 * 110.75124 * 172.07082 * 4 2 1 6 6 N 1.47244 * 108.39456 * 85.58973 * 5 4 2 7 7 C 1.46505 * 120.07199 * 110.04535 * 6 5 4 8 8 C 1.53001 * 117.49912 * 15.56714 * 7 6 5 9 9 C 1.52992 * 117.50034 * 306.90659 * 7 6 5 10 10 C 1.33607 * 119.85419 * 290.02083 * 6 5 4 11 11 O 1.21276 * 119.88790 * 179.48433 * 10 6 5 12 12 C 1.51400 * 120.22990 * 359.46650 * 10 6 5 13 13 H 1.08997 * 109.73560 * 191.20109 * 12 10 6 14 14 C 1.50706 * 109.59960 * 311.60134 * 12 10 6 15 15 H 1.07993 * 120.00244 * 124.90605 * 14 12 10 16 16 C 1.37879 * 119.99884 * 304.89837 * 14 12 10 17 17 N 1.31512 * 119.99971 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 120.00096 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46699 * 90.00437 * 18 16 14 20 20 H 1.48495 * 109.47257 * 210.00552 * 18 16 14 21 21 H 1.48496 * 109.47057 * 330.00475 * 18 16 14 22 22 N 1.45752 * 108.59428 * 117.87392 * 2 1 3 23 23 C 1.46902 * 110.99779 * 313.88666 * 22 2 1 24 24 H 1.09000 * 109.47223 * 302.12707 * 1 2 3 25 25 H 1.08997 * 109.47102 * 62.12934 * 1 2 3 26 26 H 1.09003 * 109.46822 * 182.12732 * 1 2 3 27 27 H 1.08993 * 109.21837 * 292.40839 * 4 2 1 28 28 H 1.08997 * 109.21743 * 51.75226 * 4 2 1 29 29 H 1.08998 * 109.66462 * 325.87169 * 5 4 2 30 30 H 1.08990 * 109.72166 * 205.34534 * 5 4 2 31 31 H 1.08999 * 115.54756 * 161.23363 * 7 6 5 32 32 H 1.08999 * 117.49869 * 0.02562 * 8 7 6 33 33 H 1.08996 * 117.49825 * 145.01863 * 8 7 6 34 34 H 1.09003 * 117.50378 * 214.98020 * 9 7 6 35 35 H 1.09004 * 117.49994 * 0.02562 * 9 7 6 36 36 H 0.97008 * 120.00518 * 179.97438 * 17 16 14 37 37 H 1.09005 * 109.47100 * 60.00198 * 23 22 2 38 38 H 1.08999 * 109.47249 * 179.97438 * 23 22 2 39 39 H 1.08993 * 109.47336 * 300.00080 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8765 1.0335 0.0000 4 6 2.0136 -0.6692 -1.2725 5 6 3.5311 -0.5232 -1.4194 6 7 4.1773 -1.6170 -0.6750 7 6 4.8609 -2.6929 -1.3972 8 6 5.1911 -2.4550 -2.8721 9 6 4.0727 -3.4257 -2.4846 10 6 4.1393 -1.6259 0.6605 11 8 4.6633 -2.5314 1.2739 12 6 3.4447 -0.5093 1.4108 13 1 3.6826 -0.5756 2.4724 14 6 3.9018 0.8221 0.8725 15 1 3.1763 1.5387 0.5171 16 6 5.2463 1.1253 0.8339 17 7 6.1299 0.2524 1.2663 18 14 5.8129 2.7752 0.1660 19 1 5.8760 3.7622 1.2738 20 1 7.1594 2.6270 -0.4423 21 1 4.8537 3.2480 -0.8642 22 7 1.9947 -0.6459 1.2212 23 6 1.2614 -0.1471 2.3923 24 1 -0.3634 0.5465 0.8703 25 1 -0.3633 0.4804 -0.9084 26 1 -0.3633 -1.0270 0.0381 27 1 1.7561 -1.7278 -1.2413 28 1 1.5241 -0.2066 -2.1295 29 1 3.8485 0.4363 -1.0111 30 1 3.8061 -0.5831 -2.4723 31 1 5.5705 -3.2761 -0.8103 32 1 4.9001 -1.4980 -3.3050 33 1 6.1176 -2.8821 -3.2556 34 1 4.2640 -4.4911 -2.6135 35 1 3.0457 -3.1071 -2.6630 36 1 7.0758 0.4655 1.2388 37 1 0.1982 -0.3539 2.2704 38 1 1.6276 -0.6457 3.2897 39 1 1.4140 0.9281 2.4857 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221568779.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:59 Heat of formation + Delta-G solvation = 1.364403 kcal Electronic energy + Delta-G solvation = -20687.199736 eV Core-core repulsion = 17823.811502 eV Total energy + Delta-G solvation = -2863.388234 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.36074 -38.78793 -37.93544 -35.05138 -34.59881 -32.81998 -30.28556 -28.70919 -26.80640 -25.25063 -24.14562 -23.08535 -22.80115 -20.83497 -19.68513 -18.71050 -17.75137 -17.37375 -16.83287 -15.94919 -15.75946 -15.43906 -15.27637 -14.69348 -14.55934 -14.08755 -13.83647 -13.63053 -13.37587 -13.15135 -12.88786 -12.84227 -12.65031 -12.43623 -12.20862 -12.17097 -12.00632 -11.78606 -11.62298 -11.40736 -11.30523 -11.12573 -10.65724 -10.27035 -8.99357 -8.86931 -8.14430 -6.32280 1.39128 1.41244 1.50728 2.22486 2.35660 2.46816 3.05718 3.07337 3.49003 3.85952 4.03326 4.13085 4.16867 4.24947 4.46015 4.48334 4.66102 4.73625 4.78322 4.82375 4.86231 4.89702 4.97481 5.01402 5.04943 5.10013 5.16847 5.20337 5.26337 5.34412 5.43068 5.66893 5.69341 5.89711 6.15383 6.22210 6.58409 6.78059 7.00329 7.29539 7.88504 8.83247 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.014784 B = 0.013401 C = 0.009596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.446168 B = 2088.950950 C = 2917.248610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.075 3.925 3 H 0.047 0.953 4 C -0.112 4.112 5 C 0.080 3.920 6 N -0.566 5.566 7 C 0.045 3.955 8 C -0.172 4.172 9 C -0.172 4.172 10 C 0.567 3.433 11 O -0.633 6.633 12 C 0.205 3.795 13 H 0.014 0.986 14 C -0.547 4.547 15 H 0.091 0.909 16 C 0.023 3.977 17 N -0.905 5.905 18 Si 0.952 3.048 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.245 1.245 22 N -0.550 5.550 23 C 0.037 3.963 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.262 0.738 37 H 0.092 0.908 38 H 0.044 0.956 39 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.039 1.210 -9.857 13.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 H 0.065 0.935 4 C -0.151 4.151 5 C -0.041 4.041 6 N -0.294 5.294 7 C -0.060 4.060 8 C -0.210 4.210 9 C -0.211 4.211 10 C 0.357 3.643 11 O -0.516 6.516 12 C 0.094 3.906 13 H 0.032 0.968 14 C -0.585 4.585 15 H 0.109 0.891 16 C -0.179 4.179 17 N -0.541 5.541 18 Si 0.777 3.223 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.169 1.169 22 N -0.276 5.276 23 C -0.110 4.110 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.072 0.928 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -8.696 0.242 -9.566 12.930 hybrid contribution 1.345 1.317 0.517 1.952 sum -7.351 1.559 -9.049 11.762 Atomic orbital electron populations 1.22020 0.93254 1.02066 1.02615 1.21222 0.95420 0.97183 0.89468 0.93492 1.21737 0.95028 1.00891 0.97442 1.22617 0.92764 0.92585 0.96112 1.46940 1.53799 1.23507 1.05182 1.21521 1.00653 0.94542 0.89298 1.23424 1.00778 1.01671 0.95101 1.23393 0.97354 0.98629 1.01675 1.20996 0.76938 0.84431 0.81893 1.90410 1.51166 1.40765 1.69300 1.19289 0.85155 0.92182 0.93936 0.96808 1.21606 0.92681 1.00736 1.43446 0.89095 1.25841 0.96927 1.00023 0.95122 1.70154 1.02049 1.36425 1.45488 0.85630 0.77991 0.79591 0.79112 1.20539 1.21708 1.16863 1.61282 1.03583 1.58994 1.03742 1.22322 0.99159 0.97506 0.92048 0.92097 0.90434 0.92627 0.92840 0.87920 0.87794 0.89689 0.89280 0.87415 0.86957 0.87172 0.88009 0.92843 0.88964 0.93720 0.95924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 8.31 71.98 0.60 -3.01 16 2 C 0.08 2.56 2.00 44.70 0.09 2.65 16 3 H 0.05 1.74 5.18 -2.38 -0.01 1.73 16 4 C -0.11 -3.56 5.10 30.22 0.15 -3.40 16 5 C 0.08 2.99 5.54 86.29 0.48 3.47 16 6 N -0.57 -25.56 2.83 -796.45 -2.25 -27.81 16 7 C 0.05 1.80 6.29 44.99 0.28 2.08 16 8 C -0.17 -4.98 9.83 30.62 0.30 -4.68 16 9 C -0.17 -4.98 10.19 30.62 0.31 -4.67 16 10 C 0.57 31.00 5.18 88.06 0.46 31.46 16 11 O -0.63 -40.14 16.69 -3.02 -0.05 -40.19 16 12 C 0.20 10.64 2.30 43.65 0.10 10.74 16 13 H 0.01 0.85 7.62 -2.39 -0.02 0.83 16 14 C -0.55 -27.24 4.90 25.60 0.13 -27.11 16 15 H 0.09 4.22 5.17 -2.91 -0.02 4.21 16 16 C 0.02 1.22 4.83 84.66 0.41 1.63 16 17 N -0.90 -53.09 12.11 21.45 0.26 -52.83 16 18 Si 0.95 40.40 29.52 68.60 2.03 42.42 16 19 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 22 N -0.55 -23.06 4.46 -884.76 -3.94 -27.00 16 23 C 0.04 1.35 8.62 127.69 1.10 2.45 16 24 H 0.06 1.46 6.21 -2.39 -0.01 1.45 16 25 H 0.08 1.57 8.09 -2.39 -0.02 1.55 16 26 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.05 1.79 7.91 -2.39 -0.02 1.77 16 28 H 0.10 2.43 8.06 -2.39 -0.02 2.41 16 29 H 0.10 4.43 4.15 -2.39 -0.01 4.42 16 30 H 0.09 2.63 5.38 -2.39 -0.01 2.62 16 31 H 0.09 4.13 7.52 -2.39 -0.02 4.11 16 32 H 0.11 2.90 5.97 -2.39 -0.01 2.88 16 33 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.10 2.78 8.01 -2.39 -0.02 2.77 16 36 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 37 H 0.09 2.66 6.10 -2.38 -0.01 2.65 16 38 H 0.04 1.69 7.91 -2.39 -0.02 1.67 16 39 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -70.11 294.18 1.49 -68.61 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 1.05 Total: 25.19 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 4.41 Total: 11.61 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -5.94 Total: -107.65 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -0.05 Total: -40.19 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.42 kcal Total: -70.11 1.49 -68.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221568779.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.977 kcal (2) G-P(sol) polarization free energy of solvation -70.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds