Wall clock time and date at job start Mon Mar 30 2020 04:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47051 * 2 1 4 4 H 1.09004 * 109.47038 * 57.13948 * 3 2 1 5 5 C 1.50698 * 109.47098 * 177.13841 * 3 2 1 6 6 H 1.07998 * 120.00224 * 120.00009 * 5 3 2 7 7 C 1.37879 * 119.99840 * 300.00127 * 5 3 2 8 8 N 1.31510 * 120.00409 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99675 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47470 * 90.00050 * 9 7 5 11 11 H 1.48501 * 109.47014 * 210.00157 * 9 7 5 12 12 H 1.48504 * 109.47304 * 329.99528 * 9 7 5 13 13 N 1.46904 * 109.47338 * 297.14065 * 3 2 1 14 14 C 1.46666 * 111.00043 * 170.03231 * 13 3 2 15 15 C 1.53843 * 109.97194 * 188.14927 * 14 13 3 16 16 N 1.47409 * 106.29341 * 308.15345 * 15 14 13 17 17 C 1.33523 * 128.30889 * 233.12590 * 16 15 14 18 18 O 1.21273 * 125.47705 * 338.93736 * 17 16 15 19 19 C 1.51564 * 109.04422 * 158.95957 * 17 16 15 20 20 C 1.54566 * 103.99262 * 25.75218 * 19 17 16 21 21 C 1.47854 * 120.64225 * 51.97617 * 16 15 14 22 22 H 1.09004 * 110.34973 * 66.91288 * 21 16 15 23 23 C 1.47156 * 110.99639 * 296.24006 * 13 3 2 24 24 H 1.09001 * 109.47127 * 305.05716 * 1 2 3 25 25 H 1.09001 * 109.46890 * 65.04924 * 1 2 3 26 26 H 1.08994 * 109.47112 * 185.05045 * 1 2 3 27 27 H 1.08998 * 109.47034 * 240.00347 * 2 1 3 28 28 H 1.08996 * 109.46639 * 120.00068 * 2 1 3 29 29 H 0.96998 * 120.00400 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.38536 * 308.30493 * 14 13 3 31 31 H 1.08999 * 109.38767 * 68.09586 * 14 13 3 32 32 H 1.08995 * 110.08256 * 67.34982 * 15 14 13 33 33 H 1.09002 * 110.07858 * 188.85246 * 15 14 13 34 34 H 1.08992 * 110.52021 * 267.12527 * 19 17 16 35 35 H 1.08995 * 110.64013 * 144.43734 * 19 17 16 36 36 H 1.08998 * 110.69330 * 220.99577 * 20 19 17 37 37 H 1.09005 * 110.83972 * 97.86214 * 20 19 17 38 38 H 1.09002 * 109.63800 * 290.80587 * 23 13 3 39 39 H 1.09002 * 109.64140 * 51.43500 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6354 1.9710 0.8633 5 6 3.5453 1.4431 0.0709 6 1 4.1231 1.8974 -0.7204 7 6 4.1850 0.8636 1.1461 8 7 3.4816 0.3099 2.1095 9 14 6.0509 0.8650 1.2343 10 1 6.5124 2.0891 1.9370 11 1 6.5123 -0.3355 1.9768 12 1 6.6116 0.8423 -0.1406 13 7 1.6076 2.1148 -1.2325 14 6 1.8712 3.5561 -1.1653 15 6 1.2300 4.2643 -2.3711 16 7 1.6948 3.5429 -3.5697 17 6 2.2866 4.0411 -4.6580 18 8 2.2333 5.1968 -5.0215 19 6 3.0353 2.9298 -5.3663 20 6 2.2846 1.6459 -4.9451 21 6 1.5537 2.0744 -3.6673 22 1 0.5008 1.7976 -3.7226 23 6 2.2083 1.4815 -2.4172 24 1 -0.3633 0.5903 0.8412 25 1 -0.3633 0.4335 -0.9318 26 1 -0.3633 -1.0236 0.0905 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9317 -0.0974 2.8661 30 1 1.4505 3.9582 -0.2437 31 1 2.9475 3.7280 -1.1769 32 1 0.1435 4.2128 -2.3011 33 1 1.5533 5.3046 -2.4095 34 1 4.0719 2.8936 -5.0314 35 1 2.9882 3.0629 -6.4470 36 1 2.9878 0.8401 -4.7348 37 1 1.5726 1.3435 -5.7131 38 1 3.2798 1.6805 -2.4353 39 1 2.0326 0.4062 -2.3865 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228050478.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:16 Heat of formation + Delta-G solvation = -26.157708 kcal Electronic energy + Delta-G solvation = -19905.003431 eV Core-core repulsion = 17040.421749 eV Total energy + Delta-G solvation = -2864.581682 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.47034 -37.66434 -35.81244 -33.63206 -32.22312 -31.07611 -29.23219 -27.89100 -26.00144 -23.90967 -23.14034 -21.62270 -20.73824 -19.37741 -18.75630 -16.57027 -16.26274 -15.68310 -15.28570 -14.98824 -14.66110 -14.01836 -13.71239 -13.64348 -13.06563 -12.84318 -12.67280 -12.36006 -12.13570 -11.72936 -11.63232 -11.33713 -11.12930 -10.96158 -10.89515 -10.84547 -10.57121 -10.54062 -9.98710 -9.73752 -9.62110 -9.42377 -9.20457 -8.44317 -8.34215 -7.22538 -6.06816 -4.20476 2.75762 3.21185 3.29118 3.29421 3.31299 4.32858 4.50741 4.60816 4.87726 4.98516 5.16335 5.28612 5.48444 5.52721 5.64975 5.74352 5.79798 5.81498 5.94107 6.05304 6.11994 6.29335 6.36616 6.41222 6.57340 6.60642 6.67479 6.81604 7.02512 7.10802 7.25093 7.46784 7.51659 7.68043 7.86079 8.05832 8.20583 8.36366 8.41602 8.88620 9.47769 10.92538 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.022234 B = 0.007486 C = 0.006636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.003078 B = 3739.431711 C = 4218.433008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C 0.217 3.783 4 H 0.039 0.961 5 C -0.545 4.545 6 H 0.055 0.945 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.540 5.540 14 C 0.053 3.947 15 C 0.133 3.867 16 N -0.615 5.615 17 C 0.521 3.479 18 O -0.547 6.547 19 C -0.154 4.154 20 C -0.126 4.126 21 C 0.127 3.873 22 H 0.084 0.916 23 C 0.060 3.940 24 H 0.039 0.961 25 H 0.045 0.955 26 H 0.025 0.975 27 H 0.033 0.967 28 H 0.092 0.908 29 H 0.262 0.738 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.044 0.956 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.547 0.349 -9.452 10.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.149 4.149 3 C 0.111 3.889 4 H 0.057 0.943 5 C -0.584 4.584 6 H 0.073 0.927 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.264 5.264 14 C -0.076 4.076 15 C 0.011 3.989 16 N -0.349 5.349 17 C 0.309 3.691 18 O -0.425 6.425 19 C -0.194 4.194 20 C -0.165 4.165 21 C 0.024 3.976 22 H 0.102 0.898 23 C -0.069 4.069 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.052 0.948 28 H 0.111 0.889 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.062 0.938 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.085 0.877 -9.418 10.304 hybrid contribution 2.002 0.009 0.358 2.034 sum -2.083 0.886 -9.061 9.339 Atomic orbital electron populations 1.21694 0.98753 0.98414 1.00540 1.21617 0.92240 0.99045 1.02033 1.19280 0.92776 0.91026 0.85780 0.94306 1.21704 0.92630 1.37723 1.06349 0.92729 1.24895 0.97930 0.94945 0.95530 1.69860 1.35028 1.37564 1.09761 0.86689 0.86181 0.77592 0.78093 1.20740 1.21131 1.20074 1.61887 1.58990 1.01298 1.04244 1.22252 0.98882 0.90148 0.96332 1.21959 0.99044 0.95253 0.82634 1.48602 1.59782 1.08869 1.17670 1.20660 0.78668 0.88769 0.81047 1.90673 1.63199 1.19866 1.68779 1.22393 1.00815 0.94385 1.01846 1.22290 0.99920 0.97534 0.96728 1.22029 1.00430 0.79573 0.95612 0.89783 1.22315 0.96835 0.99157 0.88601 0.94172 0.93579 0.95579 0.94794 0.88940 0.92808 0.90442 0.94311 0.91157 0.90166 0.88020 0.88736 0.89134 0.90123 0.93802 0.89829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.72 37.16 0.36 -2.21 16 2 C -0.11 -2.43 5.08 -26.73 -0.14 -2.57 16 3 C 0.22 4.96 1.73 -68.86 -0.12 4.84 16 4 H 0.04 1.00 7.95 -51.93 -0.41 0.59 16 5 C -0.55 -13.75 7.29 -34.44 -0.25 -14.00 16 6 H 0.05 1.40 6.01 -52.49 -0.32 1.09 16 7 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 8 N -0.88 -23.86 11.30 55.43 0.63 -23.23 16 9 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.54 -10.33 3.92 -227.43 -0.89 -11.22 16 14 C 0.05 0.96 5.33 -3.51 -0.02 0.94 16 15 C 0.13 2.09 7.14 -3.11 -0.02 2.07 16 16 N -0.62 -9.77 2.96 -163.61 -0.49 -10.26 16 17 C 0.52 8.55 8.02 -11.12 -0.09 8.46 16 18 O -0.55 -10.84 17.95 5.56 0.10 -10.74 16 19 C -0.15 -1.89 6.93 -26.64 -0.18 -2.08 16 20 C -0.13 -1.40 6.71 -25.74 -0.17 -1.57 16 21 C 0.13 1.81 3.74 -66.99 -0.25 1.56 16 22 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 23 C 0.06 1.03 4.19 -3.65 -0.02 1.02 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.82 7.84 -51.93 -0.41 0.41 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.03 0.72 6.19 -51.93 -0.32 0.40 16 28 H 0.09 2.31 6.00 -51.93 -0.31 2.00 16 29 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.08 1.38 7.96 -51.93 -0.41 0.97 16 31 H 0.04 0.78 7.35 -51.93 -0.38 0.40 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.08 1.24 8.11 -51.93 -0.42 0.82 16 34 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.09 0.93 7.81 -51.93 -0.41 0.53 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.85 6.63 -51.93 -0.34 0.51 16 39 H 0.08 1.45 6.00 -51.93 -0.31 1.14 16 LS Contribution 301.31 15.07 4.54 4.54 Total: -1.00 -28.58 301.31 -8.26 -36.85 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.14 Total: 0.41 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -0.99 Total: -1.81 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.75 Total: -44.71 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.10 Total: -10.74 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.58 -8.26 -36.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228050478.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.690 kcal (2) G-P(sol) polarization free energy of solvation -28.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds