Wall clock time and date at job start Mon Mar 30 2020 05:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.53893 * 2 1 4 4 C 1.53092 * 109.50668 * 239.89377 * 2 1 3 5 5 N 1.47017 * 109.25727 * 183.21608 * 4 2 1 6 6 C 1.46903 * 111.00101 * 182.38832 * 5 4 2 7 7 C 1.52999 * 109.46753 * 75.74978 * 6 5 4 8 8 H 1.08992 * 109.47075 * 304.86952 * 7 6 5 9 9 C 1.47200 * 109.47360 * 64.87489 * 7 6 5 10 10 N 5.32332 * 139.00813 * 296.94624 * 2 1 3 11 11 C 1.53003 * 109.46682 * 184.87018 * 7 6 5 12 12 C 1.50700 * 109.46821 * 174.99638 * 11 7 6 13 13 H 1.07998 * 120.00442 * 0.02562 * 12 11 7 14 14 C 1.37882 * 119.99852 * 180.02562 * 12 11 7 15 15 N 1.31518 * 119.99807 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00177 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47008 * 89.99446 * 16 14 12 18 18 H 1.48493 * 109.47486 * 210.00014 * 16 14 12 19 19 H 1.48498 * 109.46908 * 330.00165 * 16 14 12 20 20 C 1.47017 * 110.75288 * 58.61102 * 5 4 2 21 21 C 1.53100 * 109.25904 * 301.38558 * 20 5 4 22 22 H 1.08999 * 109.50668 * 176.77923 * 21 20 5 23 23 C 1.52993 * 109.50605 * 296.91550 * 21 20 5 24 24 O 1.43013 * 109.25584 * 56.84927 * 21 20 5 25 25 H 1.08998 * 109.47309 * 180.10711 * 1 2 3 26 26 H 1.09001 * 109.47566 * 300.11070 * 1 2 3 27 27 H 1.09005 * 109.47154 * 60.11459 * 1 2 3 28 28 H 1.08998 * 109.51122 * 63.28212 * 4 2 1 29 29 H 1.09005 * 109.50647 * 303.14318 * 4 2 1 30 30 H 1.08998 * 109.46988 * 315.74753 * 6 5 4 31 31 H 1.09003 * 109.46749 * 195.75188 * 6 5 4 32 32 H 1.08991 * 109.47260 * 295.00200 * 11 7 6 33 33 H 1.09009 * 109.46963 * 55.00367 * 11 7 6 34 34 H 0.97003 * 119.99618 * 179.97438 * 15 14 12 35 35 H 1.09001 * 109.50805 * 61.32097 * 20 5 4 36 36 H 1.09004 * 109.50796 * 181.44853 * 20 5 4 37 37 H 1.09002 * 109.47098 * 179.78080 * 23 21 20 38 38 H 1.09008 * 109.47313 * 299.77708 * 23 21 20 39 39 H 1.08999 * 109.47600 * 59.77900 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0412 -0.7238 -1.2484 5 7 3.5093 -0.7884 -1.2044 6 6 4.0447 -1.4268 -2.4143 7 6 3.9740 -0.4430 -3.5839 8 1 2.9498 -0.0882 -3.6988 9 6 4.8624 0.7001 -3.3180 10 7 5.5480 1.5823 -3.1127 11 6 4.4175 -1.1456 -4.8687 12 6 4.2316 -0.2154 -6.0396 13 1 3.8370 0.7777 -5.8832 14 6 4.5653 -0.6321 -7.3109 15 7 5.0464 -1.8413 -7.5014 16 14 4.3356 0.5211 -8.7623 17 1 5.5746 1.3141 -8.9654 18 1 4.0497 -0.2723 -9.9846 19 1 3.1998 1.4383 -8.4907 20 6 3.9640 -1.4883 0.0059 21 6 3.4334 -0.7567 1.2417 22 1 3.7200 -1.3040 2.1397 23 6 4.0228 0.6543 1.2923 24 8 2.0075 -0.6762 1.1662 25 1 -0.3634 -1.0276 0.0019 26 1 -0.3634 0.5155 0.8890 27 1 -0.3634 0.5121 -0.8910 28 1 1.7273 -0.1794 -2.1390 29 1 1.6332 -1.7343 -1.2759 30 1 3.4550 -2.3130 -2.6487 31 1 5.0820 -1.7152 -2.2441 32 1 5.4687 -1.4218 -4.7873 33 1 3.8166 -2.0426 -5.0183 34 1 5.2808 -2.1346 -8.3958 35 1 3.5867 -2.5109 -0.0016 36 1 5.0536 -1.5019 0.0308 37 1 3.6417 1.1760 2.1702 38 1 5.1096 0.5923 1.3499 39 1 3.7371 1.1999 0.3930 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249524556.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:35 Heat of formation + Delta-G solvation = -31.161555 kcal Electronic energy + Delta-G solvation = -19019.449559 eV Core-core repulsion = 16154.650894 eV Total energy + Delta-G solvation = -2864.798665 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 5.52 seconds Orbital eigenvalues (eV) -40.02717 -37.08223 -35.15681 -33.58288 -33.38077 -31.74181 -30.05876 -27.18159 -26.91495 -24.75850 -22.78185 -22.00450 -21.67524 -19.43980 -16.88311 -16.69638 -16.37159 -16.08002 -15.13869 -14.89954 -14.61075 -14.51605 -13.91507 -13.50247 -12.93223 -12.83678 -12.54415 -12.47082 -12.25709 -11.97883 -11.94623 -11.71177 -11.65994 -11.27448 -11.23734 -11.07414 -11.05470 -10.68935 -10.58298 -10.34350 -10.15650 -9.69607 -9.46555 -9.20462 -8.47150 -8.25493 -6.11114 -4.14294 3.28866 3.35491 3.38555 3.65475 3.71786 3.81606 3.90753 4.40040 4.74612 4.82476 4.88314 4.99010 5.02948 5.16378 5.27117 5.32100 5.36008 5.49730 5.52251 5.55037 5.63931 5.75423 5.79720 5.89506 5.89836 5.96933 6.04385 6.06742 6.30878 6.34994 6.47988 7.04455 7.07243 7.20727 7.40598 7.50951 7.84072 8.21586 8.57793 8.90419 9.51284 10.99792 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.031021 B = 0.004934 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.406002 B = 5673.263997 C = 5858.121390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.085 3.915 3 H 0.068 0.932 4 C 0.021 3.979 5 N -0.538 5.538 6 C 0.062 3.938 7 C 0.013 3.987 8 H 0.099 0.901 9 C 0.257 3.743 10 N -0.481 5.481 11 C 0.031 3.969 12 C -0.526 4.526 13 H 0.057 0.943 14 C 0.063 3.937 15 N -0.892 5.892 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.024 3.976 21 C 0.092 3.908 22 H 0.101 0.899 23 C -0.175 4.175 24 O -0.380 6.380 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.026 0.974 33 H 0.037 0.963 34 H 0.262 0.738 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.088 -0.994 15.618 17.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.086 0.914 4 C -0.107 4.107 5 N -0.262 5.262 6 C -0.066 4.066 7 C -0.009 4.009 8 H 0.116 0.884 9 C -0.060 4.060 10 N -0.158 5.158 11 C -0.007 4.007 12 C -0.564 4.564 13 H 0.075 0.925 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.104 4.104 21 C 0.034 3.966 22 H 0.119 0.881 23 C -0.233 4.233 24 O -0.300 6.300 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.933 0.620 15.949 17.028 hybrid contribution -0.357 -0.523 -1.309 1.454 sum -6.290 0.098 14.640 15.934 Atomic orbital electron populations 1.21744 0.92998 1.02849 1.02550 1.22163 0.94514 0.96109 0.84445 0.91369 1.22886 0.88002 1.00383 0.99400 1.62217 1.08763 1.53073 1.02186 1.22267 1.00731 0.95407 0.88238 1.19198 0.96474 0.88415 0.96802 0.88369 1.28856 0.93111 0.93604 0.90403 1.80980 1.11215 1.11918 1.11647 1.19175 0.97704 0.95842 0.88020 1.21132 1.43589 0.99955 0.91724 0.92515 1.24953 0.94871 0.95115 0.99006 1.69941 1.43338 1.17449 1.22313 0.86590 0.78678 0.80826 0.81975 1.20633 1.21095 1.19744 1.22773 1.01063 0.95924 0.90642 1.22218 0.80786 0.96392 0.97209 0.88096 1.22274 1.01230 0.97087 1.02679 1.87999 1.20747 1.78222 1.43002 0.91932 0.91869 0.90800 0.89143 0.93730 0.92492 0.90285 0.95607 0.94490 0.92794 0.93952 0.89749 0.92688 0.91830 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.57 37.16 0.36 -1.00 16 2 C 0.09 0.99 3.03 -26.68 -0.08 0.91 16 3 H 0.07 0.84 6.49 -51.93 -0.34 0.50 16 4 C 0.02 0.26 4.75 -3.71 -0.02 0.25 16 5 N -0.54 -7.26 3.72 -234.30 -0.87 -8.13 16 6 C 0.06 0.92 4.36 -3.82 -0.02 0.90 16 7 C 0.01 0.24 2.27 -93.41 -0.21 0.03 16 8 H 0.10 1.70 6.75 -51.93 -0.35 1.35 16 9 C 0.26 5.34 13.67 -20.76 -0.28 5.05 16 10 N -0.48 -10.82 18.54 42.15 0.78 -10.04 16 11 C 0.03 0.72 4.42 -27.88 -0.12 0.59 16 12 C -0.53 -13.93 8.60 -34.44 -0.30 -14.23 16 13 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 16 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 C 0.02 0.29 5.01 -3.71 -0.02 0.27 16 21 C 0.09 1.03 3.92 -26.68 -0.10 0.92 16 22 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 23 C -0.18 -1.99 8.88 37.15 0.33 -1.66 16 24 O -0.38 -4.76 10.28 -35.23 -0.36 -5.12 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 1.11 6.74 -51.93 -0.35 0.76 16 29 H 0.04 0.54 8.13 -51.93 -0.42 0.12 16 30 H 0.06 0.79 7.99 -51.93 -0.41 0.38 16 31 H 0.08 1.17 7.86 -51.93 -0.41 0.76 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.04 0.86 8.14 -51.92 -0.42 0.44 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.95 8.02 -51.93 -0.42 0.54 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 39 H 0.07 0.98 6.13 -51.93 -0.32 0.67 16 LS Contribution 317.92 15.07 4.79 4.79 Total: -1.00 -29.94 317.92 -6.87 -36.80 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -6.36 Total: -3.49 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -0.56 Total: -6.34 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.65 Total: -42.86 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.36 Total: -5.12 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.94 -6.87 -36.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249524556.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.640 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.52 seconds