Wall clock time and date at job start Mon Mar 30 2020 04:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53010 * 109.46776 * 2 1 4 4 H 1.08997 * 109.46598 * 54.52270 * 3 2 1 5 5 C 1.50695 * 109.47186 * 294.51666 * 3 2 1 6 6 H 1.07991 * 120.00247 * 273.16699 * 5 3 2 7 7 C 1.37885 * 119.99751 * 92.89125 * 5 3 2 8 8 N 1.31514 * 119.99943 * 3.99059 * 7 5 3 9 9 Si 1.86795 * 119.99981 * 183.97975 * 7 5 3 10 10 H 1.48508 * 109.46917 * 90.00480 * 9 7 5 11 11 H 1.48505 * 109.47305 * 210.00173 * 9 7 5 12 12 H 1.48501 * 109.47501 * 330.00855 * 9 7 5 13 13 N 1.46901 * 109.46618 * 174.51726 * 3 2 1 14 14 C 1.46685 * 111.00064 * 58.33937 * 13 3 2 15 15 C 1.52721 * 108.58039 * 168.86408 * 14 13 3 16 16 C 1.51654 * 110.59343 * 59.15919 * 15 14 13 17 17 C 1.49857 * 114.92883 * 315.48979 * 16 15 14 18 18 H 1.08997 * 107.90536 * 155.64913 * 17 16 15 19 19 C 1.50808 * 113.19130 * 274.65221 * 17 16 15 20 20 O 1.21281 * 125.40075 * 326.87159 * 19 17 16 21 21 N 1.34873 * 109.20316 * 146.87895 * 19 17 16 22 22 C 1.46975 * 111.13087 * 359.31227 * 21 19 17 23 23 C 1.46670 * 111.00222 * 293.80031 * 13 3 2 24 24 H 1.09004 * 111.95188 * 54.43074 * 23 13 3 25 25 H 1.09001 * 109.47214 * 304.70480 * 1 2 3 26 26 H 1.09005 * 109.47415 * 64.70338 * 1 2 3 27 27 H 1.09004 * 109.47001 * 184.70940 * 1 2 3 28 28 H 1.08997 * 109.46828 * 240.00433 * 2 1 3 29 29 H 1.09000 * 109.47218 * 120.00090 * 2 1 3 30 30 H 0.96998 * 119.99986 * 180.02562 * 8 7 5 31 31 H 1.08998 * 109.62307 * 288.59203 * 14 13 3 32 32 H 1.09005 * 109.62085 * 48.95127 * 14 13 3 33 33 H 1.09006 * 109.24960 * 179.44347 * 15 14 13 34 34 H 1.09000 * 109.25118 * 298.86418 * 15 14 13 35 35 H 1.09001 * 108.39175 * 76.90269 * 16 15 14 36 36 H 1.09004 * 108.39068 * 194.08086 * 16 15 14 37 37 H 0.96991 * 124.43109 * 179.33344 * 21 19 17 38 38 H 1.09002 * 110.34982 * 100.67702 * 22 21 19 39 39 H 1.08999 * 110.34881 * 222.84664 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5987 1.9839 0.8369 5 6 1.6515 2.1127 -1.2927 6 1 2.2904 2.0262 -2.1590 7 6 0.4775 2.8317 -1.3709 8 7 -0.2640 2.9987 -0.2976 9 14 -0.0595 3.5687 -3.0011 10 1 -0.9014 2.5891 -3.7338 11 1 -0.8428 4.8054 -2.7512 12 1 1.1387 3.8975 -3.8144 13 7 3.5030 1.4447 0.1323 14 6 4.1305 0.6899 -0.9577 15 6 5.6342 0.9554 -0.9307 16 6 6.2263 0.5352 0.4007 17 6 5.4354 0.9520 1.6034 18 1 5.6771 0.2680 2.4169 19 6 5.7569 2.3494 2.0705 20 8 6.8441 2.8819 1.9974 21 7 4.6438 2.9131 2.5826 22 6 3.4991 1.9949 2.5006 23 6 3.9129 0.9330 1.4444 24 1 3.4912 -0.0514 1.6477 25 1 -0.3634 0.5851 0.8448 26 1 -0.3634 0.4391 -0.9291 27 1 -0.3633 -1.0242 0.0844 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 -1.0900 3.5041 -0.3527 31 1 3.9444 -0.3752 -0.8199 32 1 3.7161 1.0131 -1.9127 33 1 6.1131 0.3913 -1.7311 34 1 5.8141 2.0194 -1.0844 35 1 6.3179 -0.5510 0.4089 36 1 7.2263 0.9612 0.4822 37 1 4.6039 3.8074 2.9558 38 1 3.3236 1.5206 3.4662 39 1 2.6071 2.5294 2.1739 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300075173.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:05 Heat of formation + Delta-G solvation = -32.930039 kcal Electronic energy + Delta-G solvation = -20196.047354 eV Core-core repulsion = 17331.172002 eV Total energy + Delta-G solvation = -2864.875352 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 252.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.55928 -37.64794 -35.29565 -34.62983 -32.08892 -30.63361 -30.20209 -26.86768 -25.98837 -24.38517 -22.63740 -21.68177 -21.16165 -19.13623 -18.08381 -16.97956 -16.26849 -16.07534 -15.10133 -14.60846 -14.36242 -14.20250 -13.72108 -13.37693 -13.23782 -12.80257 -12.66936 -12.27861 -12.14468 -11.83622 -11.49915 -11.20985 -10.94421 -10.82270 -10.75796 -10.43225 -10.35660 -10.30715 -9.96872 -9.68674 -9.44063 -9.23407 -8.90469 -8.63109 -8.44825 -7.18140 -6.08188 -4.08219 3.00340 3.27153 3.35203 3.38920 3.83235 4.36709 4.64192 4.77551 4.82068 5.11101 5.31387 5.41979 5.57035 5.61841 5.84780 5.87093 6.02953 6.09511 6.19806 6.21482 6.28393 6.29615 6.40477 6.42177 6.58746 6.75361 6.78622 6.89908 7.14614 7.18285 7.22336 7.39751 7.46733 7.58738 7.79996 8.02165 8.29855 8.54210 8.67766 8.97589 9.54469 11.00394 Molecular weight = 252.16amu Principal moments of inertia in cm(-1) A = 0.024724 B = 0.007512 C = 0.007469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.214167 B = 3726.585393 C = 3747.875745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.140 4.140 3 C 0.199 3.801 4 H 0.074 0.926 5 C -0.495 4.495 6 H 0.058 0.942 7 C 0.069 3.931 8 N -0.889 5.889 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.518 5.518 14 C 0.060 3.940 15 C -0.115 4.115 16 C -0.096 4.096 17 C -0.112 4.112 18 H 0.090 0.910 19 C 0.536 3.464 20 O -0.549 6.549 21 N -0.722 5.722 22 C 0.105 3.895 23 C 0.071 3.929 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.012 0.988 28 H 0.041 0.959 29 H 0.021 0.979 30 H 0.260 0.740 31 H 0.022 0.978 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.405 0.595 38 H 0.062 0.938 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.396 -5.672 4.173 8.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.180 4.180 3 C 0.094 3.906 4 H 0.092 0.908 5 C -0.534 4.534 6 H 0.076 0.924 7 C -0.133 4.133 8 N -0.527 5.527 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.242 5.242 14 C -0.068 4.068 15 C -0.153 4.153 16 C -0.134 4.134 17 C -0.134 4.134 18 H 0.108 0.892 19 C 0.323 3.677 20 O -0.427 6.427 21 N -0.375 5.375 22 C -0.020 4.020 23 C -0.039 4.039 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.031 0.969 28 H 0.059 0.941 29 H 0.040 0.960 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.243 0.757 38 H 0.080 0.920 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.959 -4.929 4.130 8.767 hybrid contribution -0.846 -0.075 -0.595 1.037 sum 5.113 -5.003 3.535 7.979 Atomic orbital electron populations 1.21418 0.95669 0.96968 1.03511 1.22242 0.97102 1.01040 0.97600 1.19688 0.80307 0.90947 0.99660 0.90801 1.20962 1.05003 1.31545 0.95871 0.92400 1.24856 0.96856 0.95443 0.96184 1.69909 1.14254 1.41090 1.27443 0.86649 0.78695 0.78650 0.84323 1.20816 1.21353 1.19938 1.62555 1.11759 1.51488 0.98402 1.21888 0.92853 0.94934 0.97107 1.21248 0.96409 1.01996 0.95666 1.20292 0.99236 1.00299 0.93540 1.20859 0.96956 0.95681 0.99863 0.89210 1.20641 0.83334 0.88102 0.75639 1.90667 1.24907 1.69311 1.57798 1.46177 1.10758 1.17997 1.62571 1.22526 0.90183 0.91718 0.97546 1.22504 0.92239 0.96294 0.92821 0.91356 0.92739 0.91897 0.96916 0.94068 0.95991 0.92983 0.95961 0.89477 0.92255 0.91616 0.92400 0.91302 0.75745 0.91984 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.47 8.72 37.16 0.32 -2.14 16 2 C -0.14 -2.84 4.68 -26.73 -0.13 -2.96 16 3 C 0.20 4.39 1.77 -68.86 -0.12 4.26 16 4 H 0.07 1.79 5.28 -51.93 -0.27 1.52 16 5 C -0.50 -12.37 7.59 -34.44 -0.26 -12.63 16 6 H 0.06 1.48 6.04 -52.49 -0.32 1.16 16 7 C 0.07 1.76 4.32 -17.82 -0.08 1.68 16 8 N -0.89 -23.23 11.63 55.43 0.64 -22.59 16 9 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.52 -10.07 4.25 -219.07 -0.93 -11.01 16 14 C 0.06 1.09 4.56 -4.08 -0.02 1.07 16 15 C -0.12 -1.85 6.12 -27.56 -0.17 -2.02 16 16 C -0.10 -1.42 5.38 -28.97 -0.16 -1.58 16 17 C -0.11 -1.72 2.60 -93.23 -0.24 -1.96 16 18 H 0.09 1.18 8.13 -51.93 -0.42 0.76 16 19 C 0.54 9.45 8.07 -10.89 -0.09 9.36 16 20 O -0.55 -11.32 17.37 5.56 0.10 -11.22 16 21 N -0.72 -11.37 6.28 -58.63 -0.37 -11.74 16 22 C 0.10 1.61 7.20 -2.52 -0.02 1.59 16 23 C 0.07 1.16 2.75 -66.53 -0.18 0.98 16 24 H 0.07 1.07 6.33 -51.93 -0.33 0.74 16 25 H 0.05 1.19 7.95 -51.93 -0.41 0.78 16 26 H 0.06 1.46 6.64 -51.93 -0.35 1.12 16 27 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.04 0.84 6.96 -51.93 -0.36 0.48 16 29 H 0.02 0.40 6.28 -51.93 -0.33 0.07 16 30 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 31 H 0.02 0.39 7.06 -51.93 -0.37 0.02 16 32 H 0.09 1.74 5.91 -51.93 -0.31 1.43 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.06 7.48 -51.93 -0.39 0.67 16 37 H 0.40 5.74 8.96 -40.82 -0.37 5.37 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.10 1.78 6.01 -51.93 -0.31 1.47 16 LS Contribution 292.19 15.07 4.40 4.40 Total: -1.00 -27.75 292.19 -8.09 -35.84 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.77 Total: 5.24 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -1.14 Total: -4.34 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: -0.65 Total: -45.34 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.10 Total: -11.22 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.75 -8.09 -35.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300075173.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.908 kcal (2) G-P(sol) polarization free energy of solvation -27.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds